Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386011.1

Orthogroup ID

OG0018398

Physical Location & Seq

Genomic Coordinates Forward (+)

137 .. 1012

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386011.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgttcaagaagcagtttttccgtagcagagcatctcaaagagacacaagcgaaccctttcctcccacagtaatcccaattggcagcgacatgcttcccatcaaattaaggctcttcacgctgatcggttcttctactcctccaagaataattctttatgatgcaccaaacctcataaccgaaccacaaatggtggtttctctctctcgtgtcaaactatcatacctaattaagcgtggatacgcaaaggtcatggctaggcaccttaccaagatgggtatcccagaagccgagcagcctgctattattggaaaaatatttaaggtggttgaagtggctgtccctgggttgcctattactgtgagcatagtggacgtgactgtgactactccggatgagccctcgttacgccgtttaacagcttgtgtagaggccaatcgtcaagagatgcttgatgttcatgggcatctatgggagttcatggaaacatttagggtcgacgattttaggagacacattgatgcagtcaagcaggatttcaagctagtgaggttggatagtttggaagctgctgttagacagacaccctgtttcatatgtaatgaggaacttgatgaaggagaagatcatccaaataggatagctcggttgcactgctcgcacctttaccatttaagttgcattgtctggtggcgaactaaaagtcacttgtgtccctcgtgccagcacccaatagtggacgagccaccgaaaccttatgctccatatcattggatcatgtggcttgctagtaagtcgatagatggtggtgacagtctgtctaaaatcctcatgatagcgaagttaaagaagataaatcattatctttttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

291

Amino Acids

33.39

Weight (kDa)

8.78

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14451
rosa_chinensis	RchiOBHm_Chr3g0464271
rosa_multiflora	Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii	Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa	Rorug05G0079700
rosa_samantha	Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	498
AccIII	TCCGGA	1 cut(s)	391
AclWI	GGATC	1 cut(s)	782
AfiI	CCNNNNNNNGG	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	7, 332, 541
AhdI	GACNNNNNGTC	1 cut(s)	817
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	4 cut(s)	422, 544, 569, 644
AluI	AGCT	4 cut(s)	422, 544, 569, 644
Alw26I	GTCTC	2 cut(s)	36, 505
AlwI	GGATC	1 cut(s)	782
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	84, 295, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	821
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	402
BauI	CACGAG	2 cut(s)	207, 718
BbvI	GCAGC	3 cut(s)	96, 307, 556
BccI	CCATC	3 cut(s)	107, 268, 797
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	2 cut(s)	233, 290
BcoDI	GTCTC	2 cut(s)	36, 505
BfaI	CTAG	3 cut(s)	258, 545, 789
BfuI	GTATCC	2 cut(s)	233, 290
BisI	GCNGC	3 cut(s)	85, 296, 570
BlsI	GCNGC	3 cut(s)	86, 297, 571
Bme1390I	CCNGG	1 cut(s)	345
BmeRI	GACNNNNNGTC	1 cut(s)	817
BmgBI	CACGTC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	5 cut(s)	41, 151, 438, 475, 511
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	343, 344
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	736
Bse8I	GATNNNNATC	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	343, 344
BseGI	GGATG	2 cut(s)	400, 628
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	736
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	96, 307, 556
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	326, 699
BslI	CCNNNNNNNGG	1 cut(s)	736
BsmAI	GTCTC	2 cut(s)	36, 505
BsmFI	GGGAC	2 cut(s)	326, 699
BsnI	GGCC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	123, 625, 774
BspANI	GGCC	1 cut(s)	434
BspEI	TCCGGA	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	782
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	343, 344
BssMI	GATC	3 cut(s)	123, 625, 774
BssSI	CACGAG	2 cut(s)	207, 718
Bst2BI	CACGAG	2 cut(s)	207, 718
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	4 cut(s)	70, 361, 382, 815
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	300, 659, 725, 786
BstF5I	GGATG	2 cut(s)	400, 628
BstKTI	GATC	3 cut(s)	126, 628, 777
BstMAI	GTCTC	2 cut(s)	36, 505
BstMBI	GATC	3 cut(s)	123, 625, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 658
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	343
BstV1I	GCAGC	3 cut(s)	96, 307, 556
BstXI	CCANNNNNNTGG	1 cut(s)	771
BsuI	GTATCC	2 cut(s)	233, 290
BsuRI	GGCC	1 cut(s)	434
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	400, 628
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	4 cut(s)	300, 659, 725, 786
CciI	TCATGA	1 cut(s)	831
CviAII	CATG	6 cut(s)	91, 253, 461, 481, 778, 832
DpnI	GATC	3 cut(s)	125, 627, 776
DpnII	GATC	3 cut(s)	123, 625, 774
DriI	GACNNNNNGTC	1 cut(s)	817
Eam1104I	CTCTTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	6 cut(s)	94, 256, 464, 484, 781, 835
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	2 cut(s)	326, 699
FatI	CATG	6 cut(s)	90, 252, 460, 480, 777, 831
FauNDI	CATATG	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	3 cut(s)	85, 296, 570
FokI	GGATG	2 cut(s)	407, 615
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	85, 296, 570
FspBI	CTAG	3 cut(s)	258, 545, 789
GluI	GCNGC	3 cut(s)	85, 296, 570
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	392
Hin1II	CATG	6 cut(s)	94, 256, 464, 484, 781, 835
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	3 cut(s)	373, 499, 739
Hpy188III	TCNNGA	4 cut(s)	7, 392, 443, 832
Hpy8I	GTNNAC	3 cut(s)	373, 499, 739
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	4 cut(s)	70, 361, 382, 815
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	164, 524, 652, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 658
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	6 cut(s)	94, 256, 464, 484, 781, 835
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	123, 625, 774
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	766
LpnPI	CCDG	9 cut(s)	297, 312, 330, 357, 405, 518, 601, 673, 737
Lsp1109I	GCAGC	3 cut(s)	96, 307, 556
LweI	GCATC	5 cut(s)	41, 151, 438, 475, 511
MaeI	CTAG	3 cut(s)	258, 545, 789
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	5 cut(s)	376, 382, 405, 704, 809
MalI	GATC	3 cut(s)	125, 627, 776
MboI	GATC	3 cut(s)	123, 625, 774
MboII	GAAGA	4 cut(s)	106, 123, 635, 862
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	4 cut(s)	78, 104, 150, 228
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	9 cut(s)	72, 150, 182, 412, 424, 543, 598, 727, 839
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	6 cut(s)	107, 231, 321, 416, 674, 845
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	118, 658
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	3 cut(s)	123, 625, 774
NlaIII	CATG	6 cut(s)	94, 256, 464, 484, 781, 835
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	4 cut(s)	376, 382, 704, 809
NspI	RCATGY	1 cut(s)	94
PagI	TCATGA	1 cut(s)	831
PasI	CCCWGGG	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	86, 297, 571
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	519
SalI	GTCGAC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	6 cut(s)	107, 231, 321, 416, 674, 845
SatI	GCNGC	3 cut(s)	85, 296, 570
Sau3AI	GATC	3 cut(s)	123, 625, 774
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	5 cut(s)	41, 151, 438, 475, 511
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	4 cut(s)	78, 104, 150, 228
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	3 cut(s)	258, 545, 789
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	4 cut(s)	70, 361, 382, 815
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	498, 797
TasI	AATT	4 cut(s)	78, 104, 150, 228
Tru1I	TTAA	6 cut(s)	107, 231, 321, 416, 674, 845
Tru9I	TTAA	6 cut(s)	107, 231, 321, 416, 674, 845
TscAI	CASTG	1 cut(s)	659
TseFI	GTSAC	4 cut(s)	376, 382, 704, 809
TseI	GCWGC	3 cut(s)	84, 295, 569
Tsp45I	GTSAC	4 cut(s)	376, 382, 704, 809
TspDTI	ATGAA	4 cut(s)	449, 469, 583, 630
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	659
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	3 cut(s)	258, 545, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.