Rroxscaffold_6G00415880

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018398
Physical Location & Seq
Reverse (-)
38028546 .. 38030023
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415880.1

Sequence Viewer

Length: 564 bp
ATGATAATCGAGAAGCAAGTTTTCCGTAGCAGAATAACACAGAGAGAAACGAGCAAGCCCCATCGCCTTAATGAAATCCGAATCAGCATGGACTTGCTTCCCCTCACTCTAAGCCTCTTCAAGCTAAGCGTTCATTGTGTTGGTAGTGCAACAAACATTTTTTATGGTATACCACATCTTGTAACCCAAAAACAAACGTCGGTTCCTCTCGATATGCTGCCCTACCAAAAGCGCGGGTTCACAAGGCAGATCGCTCAGTATCTTTCCACGATGGGTGTCCCAGAAGATGGGCAGTTCTCTATTATTGCACAAGTATTTGAGGTGGTTGAGGACGAGCCTGTCCTCCGGTTGCCTATTACTCTGGTCATGGCAGACGTGACGGTGAGGACTACTCCGGATGGACCGGATGTGTCCTTGTTTGGAAGTCAAATGATGATCGATGAGGCTACATGGGAATTAATGGAAAGATATAGGAATGGCGATCCTTTGGCCAACTATCGTGATCCAAATTATAGTGGAGGCTTTGGATTTTGTGTTACTGGATTGTTTGGAACCTGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

187

Amino Acids

21.17

Weight (kDa)

5.61

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14451
rosa_chinensis RchiOBHm_Chr3g0464271
rosa_multiflora Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa Rorug05G0079700
rosa_samantha Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 287
AccI GTMKAC 1 cut(s) 169
AccII CGCG 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 234
AclWI GGATC 2 cut(s) 476, 497
AcoI YGGCCR 1 cut(s) 489
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 1 cut(s) 121
AjiI CACGTC 1 cut(s) 376
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 2 cut(s) 476, 497
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 1 cut(s) 489
ApeKI GCWGC 1 cut(s) 217
AseI ATTAAT 1 cut(s) 458
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 401
BalI TGGCCA 1 cut(s) 491
BbvI GCAGC 1 cut(s) 204
BccI CCATC 4 cut(s) 69, 265, 281, 392
BisI GCNGC 1 cut(s) 218
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 401
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 204, 553
BplI GAGNNNNNCTC 2 cut(s) 376, 408
Bpu1102I GCTNAGC 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 438
BsaWI WCCGGW 3 cut(s) 345, 394, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 544
BseAI TCCGGA 1 cut(s) 394
BseCI ATCGAT 1 cut(s) 438
BseGI GGATG 2 cut(s) 403, 412
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 438
BsiSI CCGG 3 cut(s) 346, 395, 404
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 4 cut(s) 249, 435, 481, 502
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 1 cut(s) 268
BspDI ATCGAT 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 204, 553
BspPI GGATC 2 cut(s) 476, 497
BsrI ACTGG 1 cut(s) 544
BssMI GATC 4 cut(s) 249, 435, 481, 502
BssNAI GTATAC 1 cut(s) 170
Bst1107I GTATAC 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 3 cut(s) 110, 125, 255
BstF5I GGATG 2 cut(s) 403, 412
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 4 cut(s) 252, 438, 484, 505
BstMBI GATC 4 cut(s) 249, 435, 481, 502
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 204
BstZ17I GTATAC 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 1 cut(s) 491
BsuTUI ATCGAT 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 2 cut(s) 403, 412
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 438
CviAII CATG 3 cut(s) 88, 367, 450
CviJI RGCY 7 cut(s) 58, 114, 124, 337, 446, 491, 522
CviKI_1 RGCY 7 cut(s) 58, 114, 124, 337, 446, 491, 522
DdeI CTNAG 3 cut(s) 110, 125, 255
DpnI GATC 4 cut(s) 251, 437, 483, 504
DpnII GATC 4 cut(s) 249, 435, 481, 502
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 401
FaeI CATG 3 cut(s) 91, 370, 453
FaiI YATR 8 cut(s) 89, 165, 170, 215, 368, 451, 471, 513
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 87, 366, 449
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 2 cut(s) 410, 419
Fsp4HI GCNGC 1 cut(s) 218
GlaI GCGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 491
HapII CCGG 3 cut(s) 346, 395, 404
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 91, 370, 453
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 81
HpaII CCGG 3 cut(s) 346, 395, 404
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 170, 240
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 10, 209, 395, 500
Hpy8I GTNNAC 2 cut(s) 170, 240
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 2 cut(s) 197, 375
HpyCH4V TGCA 2 cut(s) 149, 308
HpyF3I CTNAG 3 cut(s) 110, 125, 255
HpySE526I ACGT 2 cut(s) 197, 375
Hsp92II CATG 3 cut(s) 91, 370, 453
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 4 cut(s) 249, 435, 481, 502
LpnPI CCDG 7 cut(s) 294, 347, 351, 359, 408, 417, 525
Lsp1109I GCAGC 1 cut(s) 204
MaeII ACGT 2 cut(s) 197, 375
MaeIII GTNAC 3 cut(s) 181, 376, 535
MalI GATC 4 cut(s) 251, 437, 483, 504
MboI GATC 4 cut(s) 249, 435, 481, 502
MboII GAAGA 2 cut(s) 109, 296
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 2 cut(s) 455, 508
MluNI TGGCCA 1 cut(s) 491
MnlI CCTC 9 cut(s) 113, 125, 216, 313, 322, 353, 378, 436, 512
Mox20I TGGCCA 1 cut(s) 491
MroI TCCGGA 1 cut(s) 394
MscI TGGCCA 1 cut(s) 491
MseI TTAA 2 cut(s) 69, 458
Msp20I TGGCCA 1 cut(s) 491
MspI CCGG 3 cut(s) 346, 395, 404
MvnI CGCG 1 cut(s) 234
NdeII GATC 4 cut(s) 249, 435, 481, 502
NlaIII CATG 3 cut(s) 91, 370, 453
NlaIV GGNNCC 2 cut(s) 204, 553
NmuCI GTSAC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 1 cut(s) 219
PshBI ATTAAT 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 204, 553
PspPI GGNCC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 69, 458
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 4 cut(s) 249, 435, 481, 502
Sau96I GGNCC 1 cut(s) 401
SetI ASST 5 cut(s) 126, 200, 324, 378, 557
SinI GGWCC 1 cut(s) 401
Sse9I AATT 2 cut(s) 455, 508
SsiI CCGC 1 cut(s) 234
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 2 cut(s) 200, 378
TaqI TCGA 3 cut(s) 9, 210, 438
TasI AATT 2 cut(s) 455, 508
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 69, 458
Tru9I TTAA 2 cut(s) 69, 458
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 87, 122
TspGWI ACGGA 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 401
VspI ATTAAT 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.