Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018398

Physical Location & Seq

Genomic Coordinates Forward (+)

76829493 .. 76830392

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAATTTCACGTCTTCAAGAATGATGTTCAAGAAGCAGTTTTTCCGTTGCAGAGCATCGCAAAGAGACACAAGCGAACCCCTTCCTCCCACAGTAATCCCAATTGGCAGCGACATGCTTCCCATCAAATTAAGGCTCTTCACGCTGATCGGTTCTTCTACTCCTCCAAGAATAATTCTTTATGATGTACCAAACCTCATAACCGAACCACAAATCGTGGTTTCTCTCTCTCGTGTCAAACTATCATACCTAATTAAGCGTGGATACGCAAAGGTCATGGCTAGGCACCTTACCAAGATGGGTATCCCAGAAGCCGAGCAGCCTGCTATTATTGGAAAAATATTTAAGGTGGTTGAAGTGGCTGTCCCTGGGTTGCCTATTACTGTGAGCATAGTGGACGTGACTGTGACTACTCCGGATGAGCCCTCGTTACGCCGTTTAACAGCTTGTGTAGAGGCCAATCGTCAAGAGATGCTTGATGTTCATGGGCGTCTATGGGAGTTCATGGAAACATTTAGGGTCGACGATTTTAGGAGACACATTGATGCAGTCAAGCAGGATTTCATGCTAGTGAGGTTGGATAGTTTGGAAGCTGCTGTTAGACAGACACCCTGTTTCATATGTAATGAGGAACTTGATGAAGGAGAAGATCATCCAAATAGGATAGCTCGGTTGCACTGCTCGCACCTTTACCATTTAAGTTGCATTGTCTGGTGGCGAACTAAAAGTCACTTGTGTCCCTCGTGCCAGCTCCCAATAGTGGACGAGCCACCGAAACCTTATGCTCCATATCATTGGATCATGTGGCTTGCTAGTAAGTCGATAGATGGTGGTGACAGTCTGTCTAAAATCCTCATGATAGCGAAGTTAAAGAAGATAAATCAATATCTTTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

299

Amino Acids

34.33

Weight (kDa)

8.86

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	205 - 250	1.1e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14451
rosa_chinensis	RchiOBHm_Chr3g0464271
rosa_multiflora	Rmu_co8386011.1_g000001 Rmu_sc0001372.1_g000007
rosa_roxburghii	Rroxscaffold_1G00055400 Rroxscaffold_6G00415880
rosa_rugosa	Rorug05G0079700
rosa_samantha	Rh3BG133100 Rh3CG135300 Rh5DG169100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	522
AccIII	TCCGGA	1 cut(s)	415
AclWI	GGATC	1 cut(s)	806
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	760
AgsI	TTSAA	3 cut(s)	18, 31, 356
AhdI	GACNNNNNGTC	1 cut(s)	841
AjiI	CACGTC	2 cut(s)	12, 400
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	4 cut(s)	446, 593, 668, 751
AluI	AGCT	4 cut(s)	446, 593, 668, 751
Alw26I	GTCTC	2 cut(s)	60, 529
AlwI	GGATC	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	108, 319, 593
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	712, 744
Asp700I	GAANNNNTTC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	845
BanI	GGYRCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	2 cut(s)	231, 742
BbsI	GAAGAC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	120, 331, 580
BccI	CCATC	3 cut(s)	131, 292, 821
BceAI	ACGGC	1 cut(s)	420
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	1 cut(s)	369
BciVI	GTATCC	2 cut(s)	257, 314
BcoDI	GTCTC	2 cut(s)	60, 529
BfaI	CTAG	3 cut(s)	282, 569, 813
BfuI	GTATCC	2 cut(s)	257, 314
BisI	GCNGC	3 cut(s)	109, 320, 594
BlsI	GCNGC	3 cut(s)	110, 321, 595
Bme1390I	CCNGG	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmgBI	CACGTC	2 cut(s)	12, 400
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	65, 462, 535
BpiI	GAAGAC	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	367, 368
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	367, 368
BseGI	GGATG	2 cut(s)	424, 652
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	120, 331, 580
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	2 cut(s)	350, 723
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	2 cut(s)	60, 529
BsmFI	GGGAC	2 cut(s)	350, 723
BsnI	GGCC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	147, 649, 798
BspANI	GGCC	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	806
BspQI	GCTCTTC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	367, 368
BssMI	GATC	3 cut(s)	147, 649, 798
BssNI	GRCGYC	1 cut(s)	490
BssSI	CACGAG	2 cut(s)	231, 742
Bst2BI	CACGAG	2 cut(s)	231, 742
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	4 cut(s)	94, 385, 406, 839
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	490
BstC8I	GCNNGC	4 cut(s)	324, 683, 749, 810
BstF5I	GGATG	2 cut(s)	424, 652
BstKTI	GATC	3 cut(s)	150, 652, 801
BstMAI	GTCTC	2 cut(s)	60, 529
BstMBI	GATC	3 cut(s)	147, 649, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 682
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	120, 331, 580
BstV2I	GAAGAC	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	795
BsuI	GTATCC	2 cut(s)	257, 314
BsuRI	GGCC	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	2 cut(s)	12, 400
BtsCI	GGATG	2 cut(s)	424, 652
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	4 cut(s)	324, 683, 749, 810
CciI	TCATGA	1 cut(s)	855
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	7 cut(s)	115, 277, 485, 505, 565, 802, 856
CviQI	GTAC	1 cut(s)	188
DpnI	GATC	3 cut(s)	149, 651, 800
DpnII	GATC	3 cut(s)	147, 649, 798
DriI	GACNNNNNGTC	1 cut(s)	841
Eam1104I	CTCTTC	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	426
FaeI	CATG	7 cut(s)	118, 280, 488, 508, 568, 805, 859
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	2 cut(s)	350, 723
FatI	CATG	7 cut(s)	114, 276, 484, 504, 564, 801, 855
FauNDI	CATATG	1 cut(s)	620
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	3 cut(s)	109, 320, 594
FokI	GGATG	2 cut(s)	431, 639
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	3 cut(s)	109, 320, 594
FspBI	CTAG	3 cut(s)	282, 569, 813
GluI	GCNGC	3 cut(s)	109, 320, 594
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	7 cut(s)	118, 280, 488, 508, 568, 805, 859
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	3 cut(s)	397, 523, 763
Hpy188III	TCNNGA	5 cut(s)	18, 31, 416, 467, 856
Hpy8I	GTNNAC	3 cut(s)	397, 523, 763
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	92, 635
HpyCH4III	ACNGT	4 cut(s)	94, 385, 406, 839
HpyCH4IV	ACGT	2 cut(s)	11, 399
HpyCH4V	TGCA	4 cut(s)	51, 548, 676, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 682
HpySE526I	ACGT	2 cut(s)	11, 399
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	7 cut(s)	118, 280, 488, 508, 568, 805, 859
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	147, 649, 798
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	2 cut(s)	756, 790
LpnPI	CCDG	9 cut(s)	321, 336, 354, 381, 429, 542, 625, 697, 761
Lsp1109I	GCAGC	3 cut(s)	120, 331, 580
LweI	GCATC	3 cut(s)	65, 462, 535
MaeI	CTAG	3 cut(s)	282, 569, 813
MaeII	ACGT	2 cut(s)	11, 399
MaeIII	GTNAC	5 cut(s)	400, 406, 429, 728, 833
MalI	GATC	3 cut(s)	149, 651, 800
MboI	GATC	3 cut(s)	147, 649, 798
MboII	GAAGA	5 cut(s)	6, 130, 147, 659, 886
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	5 cut(s)	4, 102, 128, 174, 252
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	9 cut(s)	96, 174, 206, 436, 448, 567, 622, 751, 863
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	6 cut(s)	131, 255, 345, 440, 698, 869
MslI	CAYNNNNRTG	2 cut(s)	543, 569
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	369
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	142, 682
NdeI	CATATG	1 cut(s)	620
NdeII	GATC	3 cut(s)	147, 649, 798
NlaIII	CATG	7 cut(s)	118, 280, 488, 508, 568, 805, 859
NlaIV	GGNNCC	1 cut(s)	287
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	4 cut(s)	400, 406, 728, 833
NspI	RCATGY	1 cut(s)	118
PagI	TCATGA	1 cut(s)	855
PasI	CCCWGGG	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	110, 321, 595
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	2 cut(s)	543, 569
SalI	GTCGAC	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	6 cut(s)	131, 255, 345, 440, 698, 869
SatI	GCNGC	3 cut(s)	109, 320, 594
Sau3AI	GATC	3 cut(s)	147, 649, 798
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	3 cut(s)	65, 462, 535
SmiMI	CAYNNNNRTG	2 cut(s)	543, 569
Sse9I	AATT	5 cut(s)	4, 102, 128, 174, 252
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	3 cut(s)	282, 569, 813
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	4 cut(s)	94, 385, 406, 839
TaiI	ACGT	2 cut(s)	14, 402
TaqI	TCGA	2 cut(s)	522, 821
TasI	AATT	5 cut(s)	4, 102, 128, 174, 252
Tru1I	TTAA	6 cut(s)	131, 255, 345, 440, 698, 869
Tru9I	TTAA	6 cut(s)	131, 255, 345, 440, 698, 869
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	4 cut(s)	400, 406, 728, 833
TseI	GCWGC	3 cut(s)	108, 319, 593
Tsp45I	GTSAC	4 cut(s)	400, 406, 728, 833
TspDTI	ATGAA	6 cut(s)	17, 473, 493, 553, 607, 654
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	683
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	3 cut(s)	282, 569, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.