Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013873

Physical Location & Seq

Genomic Coordinates Forward (+)

10564475 .. 10566977

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGCCTGCCACTGCTGCAACAGCTACTACTTCAGGCACATGGGTGCTTCACCACAAGAGATTCCTTTCTTCGTCGAGAAGAAGAGACTCGGGTAGTAGTACTGCTACTTCTCTCTCAGTTTCTTCAACCCCCAAAAACACAAACACAATCACTTGCTCTCTACAAACACCTTCCTTCATCCAGTTTCCCAAACAAGCTCCAACCTACTCACAGCCATCATCATCATCATCTACTACCATTTTAACTAAAACCCCTAAAGATCAAAAACCCCTAACTTCTTCTTCTTCGAATTCTAAGCCTGTTGTACAGCCTCAACAATGGAATTTGTTTCAGAGAGTAGCTGCCATGGCCATAGACGCAATGGAGAGCGCTTTGGTGTCAAAAGAGCTCGAACATCCACTCCCCAAAACCGCAGACCCAAAAGTCCAAATCGCCGGAAACTTCGCTCCGGTGCCGGAACAACCAGTCAAACACTCGCTCCCCGTCACCGGAAAAATCCCGGAATGCATTCGCGGCGTCTACGTCCGAAACGGCGCCAACCCACTTCACGAGCCGGTCGCCGGTCACCACCTCTTCGACGGAGACGGCATGGTCCACGCCCTGAGCTTCAACTCCGACGGGAGCGCCAGCTACGCCTGTAGGTTCACCGAAACCCACCGTATGGTCCAGGAGCGGGCTCTGGGCCGGCCCATGTTCCCCAAAGCCATTGGCGAACTCCACGGTCACTCTGGCATCGCCCGATTGGCTCTCTTCTACCTACGCGGGGCCTGCGGGCTCGTGGACCCCAGCCACGGACTCGGCGTGGCCAACGCCGGCCTCGTCTACTTCAACGGCAGGCTTCTTGCCATGTCCGAAGACGACTTGCCGTACCACGTAAGGGTCACCAAAACAGGGGACCTCAAAACCGAAGGGAGATACGACTTCAACGACCAGCTCAAGTCCACCATGATCGCCCACCCCAAAGTGGACCCCGCCACCGGCGAGCTCTTCGCGCTCAGCTACGACGTTGTCCAGAAGCCTTACCTCAAGTACTTCAAATTCTCCCCAAACGGCACGAAATCCCCTGACGTAGAAATCCCGCTGGCTCAGCCCACCATGATGCACGACTTCGCCATTACCGAACGGTTCGTCGTAATCCCGGACCAGCAGGTCGTCTTCAACCTGCCGGAGATGATCCGCGGTGGGTCCCCTGTCATTTACGACAAGAACAAGGTTGCCCGGTTCGGGATTCTCGACAAGAATGCGAGCGATGCTTCCGGAATCAGATGGGTCGAGGCTCCCGACTGCTTCTGCTTCCATCTCTGGAACGCGTGGGAGGAACCCGACACTGACGAGGTGGTCGTGATAGGGTCGTGTATGACTCCACCGGACTCCATTTTCAATGAATGCGACGAGTGTCTAGAGAGTGTTTTGTCGGAAATACGTCTCAATTTGAAAACAGGGAAGTCGACACGTCGTCCAATCTGTTCGGAGCAGATGAATTTGGAAGCGGGGATGGTGAACCGGAACAAGCTCGGGCGCAAGACCCGGTTCGCGTACTTGGCTCTGGCCGAGCCGTGGCCTAAAGTCTCGGGTTTTGCTAAGGTCGACCTTTTCACTGGGGAGGTCAAGAAGCACATCTATGGAGAGCAGAGGTTCGGTGGTGAACCTCTGTTTCTTCCAAGAGACCCGAATTCCGAAAACGAAGACGATGGTTACATTCTCGCTTTTGTCCATGATGAGAAGGAATGGAAATCGGAGCTGCAAATTGTTAATGCCATGACTTTGAAGCTTGAAGCTTCGATCAAGTTACCCTCCAGGGTCCCGTACGGTTTTCATGGCACGTTTATAAGTTCCAAGGATTTACAGAAGCAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

620

Amino Acids

68.39

Weight (kDa)

7.29

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	148 - 611	1.3e-129	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78390
fragaria_vesca	FvH4_3g16730
malus_domestica	MD05G1207300.v1.1 MD10G1194200.v1.1
prunus_persica	Prupe.4G150100_v2.0.a1
pyrus_communis	pycom05g19340 pycom10g16810
rosa_chinensis	RchiOBHm_Chr5g0027901
rosa_laevigata	RLG00000033052
rosa_multiflora	Rmu_sc0000309.1_g000029
rosa_roxburghii	Rroxscaffold_1G00051730
rosa_rugosa	Rorug05G0102400.1
rosa_samantha	Rh5AG196700 Rh5BG194600 Rh5CG214600 Rh5DG196300
rosa_wichuraiana	Rw5G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1829
AasI	GACNNNNNNGTC	4 cut(s)	422, 590, 1148, 1337
Acc36I	ACCTGC	2 cut(s)	1138, 1170
AccB1I	GGYRCC	2 cut(s)	451, 533
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	673
AccI	GTMKAC	4 cut(s)	519, 822, 1448, 1587
AccII	CGCG	6 cut(s)	513, 762, 992, 1179, 1310, 1535
AccIII	TCCGGA	1 cut(s)	1256
AclWI	GGATC	1 cut(s)	1168
AcoI	YGGCCR	3 cut(s)	348, 804, 1548
AcsI	RAATTY	5 cut(s)	289, 322, 1037, 1480, 1672
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	2 cut(s)	516, 534
AfaI	GTAC	6 cut(s)	100, 306, 869, 1031, 1538, 1808
AfeI	AGCGCT	1 cut(s)	370
AflIII	ACRYGT	2 cut(s)	1308, 1451
AhdI	GACNNNNNGTC	1 cut(s)	1455
AjiI	CACGTC	1 cut(s)	1454
AjnI	CCWGG	2 cut(s)	666, 1796
AleI	CACNNNNGTG	1 cut(s)	41
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
Alw21I	GWGCWC	2 cut(s)	390, 987
Alw26I	GTCTC	5 cut(s)	78, 576, 1430, 1573, 1659
AlwI	GGATC	1 cut(s)	1168
Ama87I	CYCGRG	3 cut(s)	88, 1514, 1570
Aor13HI	TCCGGA	1 cut(s)	1256
Aor51HI	AGCGCT	1 cut(s)	370
AoxI	GGCC	8 cut(s)	348, 682, 686, 765, 804, 814, 1548, 1559
ApeKI	GCWGC	3 cut(s)	14, 341, 1741
ApoI	RAATTY	5 cut(s)	289, 322, 1037, 1480, 1672
ArsI	GACNNNNNNTTYG	2 cut(s)	1113, 1145
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	5 cut(s)	371, 536, 626, 994, 1521
AsuC2I	CCSGG	4 cut(s)	500, 1139, 1219, 1528
AsuHPI	GGTGA	7 cut(s)	41, 478, 557, 637, 874, 1510, 1655
AsuII	TTCGAA	1 cut(s)	287
AvaI	CYCGRG	3 cut(s)	88, 1514, 1570
AvaII	GGWCC	8 cut(s)	592, 664, 781, 895, 967, 1141, 1185, 1801
BalI	TGGCCA	2 cut(s)	350, 806
BanI	GGYRCC	2 cut(s)	451, 533
BanII	GRGCYC	4 cut(s)	390, 679, 777, 987
BarI	GAAGNNNNNNTAC	2 cut(s)	91, 123
BauI	CACGAG	2 cut(s)	548, 776
BbsI	GAAGAC	3 cut(s)	861, 1147, 1692
Bbv12I	GWGCWC	2 cut(s)	390, 987
BbvI	GCAGC	2 cut(s)	328, 1728
BccI	CCATC	5 cut(s)	223, 1260, 1305, 1489, 1685
BceAI	ACGGC	6 cut(s)	547, 601, 847, 850, 1066, 1540
BcgI	CGANNNNNNTGC	2 cut(s)	1223, 1257
BciT130I	CCWGG	2 cut(s)	668, 1798
BcnI	CCSGG	4 cut(s)	500, 1139, 1219, 1528
BcoDI	GTCTC	5 cut(s)	78, 576, 1430, 1573, 1659
BfaI	CTAG	1 cut(s)	1400
BfmI	CTRYAG	1 cut(s)	637
BfoI	RGCGCY	3 cut(s)	372, 537, 627
BfuAI	ACCTGC	2 cut(s)	1138, 1170
BglI	GCCNNNNNGGC	1 cut(s)	743
BisI	GCNGC	4 cut(s)	15, 342, 514, 1742
BlpI	GCTNAGC	2 cut(s)	995, 1086
BlsI	GCNGC	4 cut(s)	16, 343, 515, 1743
BmcAI	AGTACT	2 cut(s)	100, 1031
Bme1390I	CCNGG	6 cut(s)	500, 668, 1139, 1219, 1528, 1798
Bme18I	GGWCC	8 cut(s)	592, 664, 781, 895, 967, 1141, 1185, 1801
BmeRI	GACNNNNNGTC	1 cut(s)	1455
BmeT110I	CYCGRG	3 cut(s)	88, 1514, 1570
BmgBI	CACGTC	1 cut(s)	1454
BmrFI	CCNGG	6 cut(s)	500, 668, 1139, 1219, 1528, 1798
BmrI	ACTGGG	1 cut(s)	1608
BmsI	GCATC	3 cut(s)	741, 1089, 1240
BmuI	ACTGGG	1 cut(s)	1608
BoxI	GACNNNNGTC	1 cut(s)	1395
BpiI	GAAGAC	3 cut(s)	861, 1147, 1692
BpmI	CTGGAG	1 cut(s)	1780
Bpu10I	CCTNAGC	2 cut(s)	602, 1581
Bpu1102I	GCTNAGC	2 cut(s)	995, 1086
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	920, 1010
BpuMI	CCSGG	4 cut(s)	500, 1139, 1219, 1528
BsaAI	YACGTR	1 cut(s)	874
BsaHI	GRCGYC	2 cut(s)	516, 534
BsaI	GGTCTC	1 cut(s)	1659
BsaJI	CCNNGG	7 cut(s)	345, 718, 790, 1177, 1556, 1797, 1836
BsaWI	WCCGGW	5 cut(s)	448, 488, 1256, 1366, 1503
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 462, 492
Bse118I	RCCGGY	5 cut(s)	553, 560, 684, 812, 977
Bse1I	ACTGG	3 cut(s)	181, 464, 1603
Bse3DI	GCAATG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	1256
BseBI	CCWGG	2 cut(s)	668, 1798
BseDI	CCNNGG	7 cut(s)	345, 718, 790, 1177, 1556, 1797, 1836
BseGI	GGATG	3 cut(s)	177, 394, 1500
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	129, 593, 1009, 1100
BseNI	ACTGG	3 cut(s)	181, 464, 1603
BseXI	GCAGC	2 cut(s)	328, 1728
BseYI	CCCAGC	1 cut(s)	785
Bsh1236I	CGCG	6 cut(s)	513, 762, 992, 1179, 1310, 1535
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	8 cut(s)	350, 684, 688, 767, 806, 816, 1550, 1561
BshNI	GGYRCC	2 cut(s)	451, 533
BsiEI	CGRYCG	1 cut(s)	558
BsiHKAI	GWGCWC	2 cut(s)	390, 987
BsiHKCI	CYCGRG	3 cut(s)	88, 1514, 1570
BsiWI	CGTACG	1 cut(s)	1806
BslFI	GGGAC	3 cut(s)	908, 1171, 1787
BsmAI	GTCTC	5 cut(s)	78, 576, 1430, 1573, 1659
BsmBI	CGTCTC	2 cut(s)	576, 1430
BsmFI	GGGAC	3 cut(s)	908, 1171, 1787
BsmI	GAATGC	4 cut(s)	507, 509, 1246, 1391
BsnI	GGCC	8 cut(s)	350, 684, 688, 767, 806, 816, 1550, 1561
Bso31I	GGTCTC	1 cut(s)	1659
BsoBI	CYCGRG	3 cut(s)	88, 1514, 1570
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	4 cut(s)	390, 679, 777, 987
Bsp13I	TCCGGA	1 cut(s)	1256
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	259, 948, 1173, 1782
Bsp1720I	GCTNAGC	2 cut(s)	995, 1086
Bsp19I	CCATGG	1 cut(s)	345
BspANI	GGCC	8 cut(s)	350, 684, 688, 767, 806, 816, 1550, 1561
BspCNI	CTCAG	4 cut(s)	128, 594, 1008, 1099
BspEI	TCCGGA	1 cut(s)	1256
BspFNI	CGCG	6 cut(s)	513, 762, 992, 1179, 1310, 1535
BspMI	ACCTGC	2 cut(s)	1138, 1170
BspPI	GGATC	1 cut(s)	1168
BspQI	GCTCTTC	1 cut(s)	992
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	2 cut(s)	451, 533
BspTNI	GGTCTC	1 cut(s)	1659
BsrBI	CCGCTC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	5 cut(s)	553, 560, 684, 812, 977
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	3 cut(s)	181, 464, 1603
BssAI	RCCGGY	5 cut(s)	553, 560, 684, 812, 977
BssECI	CCNNGG	7 cut(s)	345, 718, 790, 1177, 1556, 1797, 1836
BssMI	GATC	4 cut(s)	259, 948, 1173, 1782
BssNI	GRCGYC	2 cut(s)	516, 534
BssSI	CACGAG	2 cut(s)	548, 776
BssT1I	CCWWGG	2 cut(s)	345, 1836
Bst2BI	CACGAG	2 cut(s)	548, 776
Bst2UI	CCWGG	2 cut(s)	668, 1798
Bst4CI	ACNGT	4 cut(s)	659, 722, 1125, 1811
Bst6I	CTCTTC	4 cut(s)	76, 578, 755, 992
BstACI	GRCGYC	2 cut(s)	516, 534
BstAUI	TGTACA	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	874
BstBI	TTCGAA	1 cut(s)	287
BstDEI	CTNAG	6 cut(s)	115, 294, 602, 995, 1086, 1581
BstDSI	CCRYGG	5 cut(s)	345, 718, 790, 1177, 1556
BstEII	GGTNACC	2 cut(s)	563, 880
BstF5I	GGATG	3 cut(s)	177, 394, 1500
BstFNI	CGCG	6 cut(s)	513, 762, 992, 1179, 1310, 1535
BstH2I	RGCGCY	3 cut(s)	372, 537, 627
BstHHI	GCGC	5 cut(s)	371, 536, 626, 994, 1521
BstKTI	GATC	4 cut(s)	262, 951, 1176, 1785
BstMAI	GTCTC	5 cut(s)	78, 576, 1430, 1573, 1659
BstMBI	GATC	4 cut(s)	259, 948, 1173, 1782
BstMCI	CGRYCG	1 cut(s)	558
BstNI	CCWGG	2 cut(s)	668, 1798
BstPAI	GACNNNNGTC	1 cut(s)	1395
BstPI	GGTNACC	2 cut(s)	563, 880
BstSCI	CCNGG	6 cut(s)	498, 666, 1137, 1217, 1526, 1796
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	6 cut(s)	513, 762, 992, 1179, 1310, 1535
BstV1I	GCAGC	2 cut(s)	328, 1728
BstV2I	GAAGAC	3 cut(s)	861, 1147, 1692
BsuRI	GGCC	8 cut(s)	350, 684, 688, 767, 806, 816, 1550, 1561
BtgI	CCRYGG	5 cut(s)	345, 718, 790, 1177, 1556
BtgZI	GCGATG	2 cut(s)	718, 1263
BtrI	CACGTC	1 cut(s)	1454
BtsCI	GGATG	3 cut(s)	177, 394, 1500
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	3 cut(s)	9, 1326, 1596
BveI	ACCTGC	2 cut(s)	1138, 1170
CfoI	GCGC	5 cut(s)	371, 536, 626, 994, 1521
Cfr10I	RCCGGY	5 cut(s)	553, 560, 684, 812, 977
Cfr42I	CCGCGG	1 cut(s)	1180
CseI	GACGC	2 cut(s)	365, 505
Csp6I	GTAC	6 cut(s)	99, 305, 868, 1030, 1537, 1807
CviQI	GTAC	6 cut(s)	99, 305, 868, 1030, 1537, 1807
DdeI	CTNAG	6 cut(s)	115, 294, 602, 995, 1086, 1581
DinI	GGCGCC	1 cut(s)	535
DpnI	GATC	4 cut(s)	261, 950, 1175, 1784
DpnII	GATC	4 cut(s)	259, 948, 1173, 1782
DrdI	GACNNNNNNGTC	4 cut(s)	422, 590, 1148, 1337
DriI	GACNNNNNGTC	1 cut(s)	1455
DseDI	GACNNNNNNGTC	4 cut(s)	422, 590, 1148, 1337
EaeI	YGGCCR	3 cut(s)	348, 804, 1548
Eam1104I	CTCTTC	4 cut(s)	76, 578, 755, 992
Eam1105I	GACNNNNNGTC	1 cut(s)	1455
EarI	CTCTTC	4 cut(s)	76, 578, 755, 992
Ecl136II	GAGCTC	2 cut(s)	388, 985
Eco130I	CCWWGG	2 cut(s)	345, 1836
Eco24I	GRGCYC	4 cut(s)	390, 679, 777, 987
Eco31I	GGTCTC	1 cut(s)	1659
Eco47I	GGWCC	8 cut(s)	592, 664, 781, 895, 967, 1141, 1185, 1801
Eco47III	AGCGCT	1 cut(s)	370
Eco53kI	GAGCTC	2 cut(s)	388, 985
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	3 cut(s)	88, 1514, 1570
Eco91I	GGTNACC	2 cut(s)	563, 880
EcoICRI	GAGCTC	2 cut(s)	388, 985
EcoO109I	RGGNCCY	4 cut(s)	765, 895, 1185, 1801
EcoO65I	GGTNACC	2 cut(s)	563, 880
EcoRI	GAATTC	2 cut(s)	289, 1672
EcoRII	CCWGG	2 cut(s)	666, 1796
EcoT14I	CCWWGG	2 cut(s)	345, 1836
EcoT22I	ATGCAT	1 cut(s)	509
EcoT38I	GRGCYC	4 cut(s)	390, 679, 777, 987
EgeI	GGCGCC	1 cut(s)	535
EheI	GGCGCC	1 cut(s)	535
ErhI	CCWWGG	2 cut(s)	345, 1836
Esp3I	CGTCTC	2 cut(s)	576, 1430
FaqI	GGGAC	3 cut(s)	908, 1171, 1787
FauI	CCCGC	6 cut(s)	666, 755, 764, 979, 1086, 1483
FblI	GTMKAC	4 cut(s)	519, 822, 1448, 1587
Fnu4HI	GCNGC	4 cut(s)	15, 342, 514, 1742
FokI	GGATG	3 cut(s)	164, 381, 1507
FriOI	GRGCYC	4 cut(s)	390, 679, 777, 987
FseI	GGCCGGCC	1 cut(s)	688
Fsp4HI	GCNGC	4 cut(s)	15, 342, 514, 1742
FspBI	CTAG	1 cut(s)	1400
GlaI	GCGC	5 cut(s)	370, 535, 625, 993, 1520
GluI	GCNGC	4 cut(s)	15, 342, 514, 1742
GsaI	CCCAGC	1 cut(s)	789
GsuI	CTGGAG	1 cut(s)	1780
HaeII	RGCGCY	3 cut(s)	372, 537, 627
HaeIII	GGCC	8 cut(s)	350, 684, 688, 767, 806, 816, 1550, 1561
HgaI	GACGC	2 cut(s)	365, 505
HhaI	GCGC	5 cut(s)	371, 536, 626, 994, 1521
Hin1I	GRCGYC	2 cut(s)	516, 534
Hin6I	GCGC	5 cut(s)	369, 534, 624, 992, 1519
HinP1I	GCGC	5 cut(s)	369, 534, 624, 992, 1519
HincII	GTYRAC	2 cut(s)	1449, 1588
HindII	GTYRAC	2 cut(s)	1449, 1588
HindIII	AAGCTT	2 cut(s)	1769, 1776
HinfI	GANTC	7 cut(s)	60, 86, 795, 1228, 1260, 1360, 1370
HphI	GGTGA	7 cut(s)	41, 478, 557, 637, 874, 1510, 1655
Hpy188I	TCNGA	9 cut(s)	333, 527, 616, 853, 1265, 1417, 1471, 1678, 1738
Hpy99I	CGWCG	7 cut(s)	76, 581, 620, 1007, 1133, 1394, 1458
HpyAV	CCTTC	4 cut(s)	180, 184, 902, 1717
HpyCH4III	ACNGT	4 cut(s)	659, 722, 1125, 1811
HpyCH4IV	ACGT	7 cut(s)	522, 873, 1005, 1068, 1423, 1453, 1823
HpyCH4V	TGCA	4 cut(s)	17, 507, 1102, 1744
HpyF3I	CTNAG	6 cut(s)	115, 294, 602, 995, 1086, 1581
HpySE526I	ACGT	7 cut(s)	522, 873, 1005, 1068, 1423, 1453, 1823
Hsp92I	GRCGYC	2 cut(s)	516, 534
HspAI	GCGC	5 cut(s)	369, 534, 624, 992, 1519
KasI	GGCGCC	1 cut(s)	533
KflI	GGGWCCC	2 cut(s)	1185, 1801
Kpn2I	TCCGGA	1 cut(s)	1256
KroI	GCCGGC	2 cut(s)	684, 812
KroNI	GCCGGC	2 cut(s)	686, 814
KspI	CCGCGG	1 cut(s)	1180
Kzo9I	GATC	4 cut(s)	259, 948, 1173, 1782
LguI	GCTCTTC	1 cut(s)	992
LmnI	GCTCC	8 cut(s)	202, 451, 483, 621, 670, 1282, 1471, 1738
Lsp1109I	GCAGC	2 cut(s)	328, 1728
LweI	GCATC	3 cut(s)	741, 1089, 1240
MaeI	CTAG	1 cut(s)	1400
MaeII	ACGT	7 cut(s)	522, 873, 1005, 1068, 1423, 1453, 1823
MaeIII	GTNAC	6 cut(s)	484, 563, 722, 880, 1694, 1788
MalI	GATC	4 cut(s)	261, 950, 1175, 1784
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	4 cut(s)	259, 948, 1173, 1782
MhlI	GDGCHC	4 cut(s)	390, 679, 777, 987
MlsI	TGGCCA	2 cut(s)	350, 806
MluCI	AATT	7 cut(s)	289, 322, 1037, 1429, 1480, 1672, 1746
MluI	ACGCGT	1 cut(s)	1308
MluNI	TGGCCA	2 cut(s)	350, 806
Mly113I	GGCGCC	1 cut(s)	534
MlyI	GAGTC	4 cut(s)	80, 789, 1354, 1364
MmeI	TCCRAC	3 cut(s)	224, 639, 1395
Mox20I	TGGCCA	2 cut(s)	350, 806
Mph1103I	ATGCAT	1 cut(s)	509
MroI	TCCGGA	1 cut(s)	1256
MroNI	GCCGGC	2 cut(s)	684, 812
MroXI	GAANNNNTTC	1 cut(s)	507
MscI	TGGCCA	2 cut(s)	350, 806
MseI	TTAA	3 cut(s)	242, 1752, 1858
MslI	CAYNNNNRTG	3 cut(s)	41, 1097, 1620
Msp20I	TGGCCA	2 cut(s)	350, 806
MspA1I	CMGCKG	2 cut(s)	1081, 1179
MspR9I	CCNGG	6 cut(s)	500, 668, 1139, 1219, 1528, 1798
Mva1269I	GAATGC	4 cut(s)	507, 509, 1246, 1391
MvaI	CCWGG	2 cut(s)	668, 1798
MvnI	CGCG	6 cut(s)	513, 762, 992, 1179, 1310, 1535
NaeI	GCCGGC	2 cut(s)	686, 814
NarI	GGCGCC	1 cut(s)	534
NciI	CCSGG	4 cut(s)	500, 1139, 1219, 1528
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	4 cut(s)	259, 948, 1173, 1782
NgoMIV	GCCGGC	2 cut(s)	684, 812
NmeAIII	GCCGAG	2 cut(s)	777, 1576
NmuCI	GTSAC	4 cut(s)	484, 563, 722, 880
NsiI	ATGCAT	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	992
PcsI	WCGNNNNNNNCGW	7 cut(s)	798, 816, 924, 1116, 1230, 1278, 1338
PctI	GAATGC	4 cut(s)	507, 509, 1246, 1391
PdiI	GCCGGC	2 cut(s)	686, 814
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	60, 1228, 1260
Pfl23II	CGTACG	1 cut(s)	1806
PflFI	GACNNNGTC	1 cut(s)	1007
PflMI	CCANNNNNTGG	1 cut(s)	661
PfoI	TCCNGGA	3 cut(s)	498, 666, 1137
PkrI	GCNGC	4 cut(s)	16, 343, 515, 1743
PleI	GAGTC	4 cut(s)	80, 789, 1354, 1364
PluTI	GGCGCC	1 cut(s)	537
PpsI	GAGTC	4 cut(s)	80, 789, 1354, 1364
Ppu21I	YACGTR	1 cut(s)	874
PpuMI	RGGWCCY	3 cut(s)	895, 1185, 1801
PshAI	GACNNNNGTC	1 cut(s)	1395
PsiI	TTATAA	1 cut(s)	1829
Psp124BI	GAGCTC	2 cut(s)	390, 987
Psp5II	RGGWCCY	3 cut(s)	895, 1185, 1801
Psp6I	CCWGG	2 cut(s)	666, 1796
PspEI	GGTNACC	2 cut(s)	563, 880
PspFI	CCCAGC	1 cut(s)	785
PspGI	CCWGG	2 cut(s)	666, 1796
PspLI	CGTACG	1 cut(s)	1806
PspPPI	RGGWCCY	3 cut(s)	895, 1185, 1801
PsyI	GACNNNGTC	1 cut(s)	1007
RigI	GGCCGGCC	1 cut(s)	688
RsaI	GTAC	6 cut(s)	100, 306, 869, 1031, 1538, 1808
RsaNI	GTAC	6 cut(s)	99, 305, 868, 1030, 1537, 1807
RseI	CAYNNNNRTG	3 cut(s)	41, 1097, 1620
SacI	GAGCTC	2 cut(s)	390, 987
SacII	CCGCGG	1 cut(s)	1180
SalI	GTCGAC	2 cut(s)	1447, 1586
SapI	GCTCTTC	1 cut(s)	992
SaqAI	TTAA	3 cut(s)	242, 1752, 1858
SatI	GCNGC	4 cut(s)	15, 342, 514, 1742
Sau3AI	GATC	4 cut(s)	259, 948, 1173, 1782
ScaI	AGTACT	2 cut(s)	100, 1031
SchI	GAGTC	4 cut(s)	80, 789, 1354, 1364
ScrFI	CCNGG	6 cut(s)	500, 668, 1139, 1219, 1528, 1798
SduI	GDGCHC	4 cut(s)	390, 679, 777, 987
SfaNI	GCATC	3 cut(s)	741, 1089, 1240
SfcI	CTRYAG	1 cut(s)	637
SfoI	GGCGCC	1 cut(s)	535
Sfr303I	CCGCGG	1 cut(s)	1180
SfuI	TTCGAA	1 cut(s)	287
SgrAI	CRCCGGYG	1 cut(s)	977
SgrBI	CCGCGG	1 cut(s)	1180
SinI	GGWCC	8 cut(s)	592, 664, 781, 895, 967, 1141, 1185, 1801
SmiMI	CAYNNNNRTG	3 cut(s)	41, 1097, 1620
SmlI	CTYRAG	2 cut(s)	935, 1025
SmoI	CTYRAG	2 cut(s)	935, 1025
Sse9I	AATT	7 cut(s)	289, 322, 1037, 1429, 1480, 1672, 1746
SspDI	GGCGCC	1 cut(s)	533
SspMI	CTAG	1 cut(s)	1400
SstI	GAGCTC	2 cut(s)	390, 987
StyD4I	CCNGG	6 cut(s)	498, 666, 1137, 1217, 1526, 1796
StyI	CCWWGG	2 cut(s)	345, 1836
TaaI	ACNGT	4 cut(s)	659, 722, 1125, 1811
TaiI	ACGT	7 cut(s)	525, 876, 1008, 1071, 1426, 1456, 1826
TaqI	TCGA	9 cut(s)	74, 287, 390, 576, 1233, 1272, 1448, 1587, 1781
TasI	AATT	7 cut(s)	289, 322, 1037, 1429, 1480, 1672, 1746
TatI	WGTACW	3 cut(s)	98, 304, 1029
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	3 cut(s)	60, 1228, 1260
Tru1I	TTAA	3 cut(s)	242, 1752, 1858
Tru9I	TTAA	3 cut(s)	242, 1752, 1858
TscAI	CASTG	3 cut(s)	16, 1333, 1603
TseFI	GTSAC	4 cut(s)	484, 563, 722, 880
TseI	GCWGC	3 cut(s)	14, 341, 1741
Tsp45I	GTSAC	4 cut(s)	484, 563, 722, 880
TspDTI	ATGAA	4 cut(s)	166, 1398, 1493, 1805
TspGWI	ACGGA	2 cut(s)	594, 807
TspRI	CASTG	3 cut(s)	16, 1333, 1603
Tth111I	GACNNNGTC	1 cut(s)	1007
Van91I	CCANNNNNTGG	1 cut(s)	661
VpaK11BI	GGWCC	8 cut(s)	592, 664, 781, 895, 967, 1141, 1185, 1801
XapI	RAATTY	5 cut(s)	289, 322, 1037, 1480, 1672
XbaI	TCTAGA	1 cut(s)	1399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	358, 725
XmiI	GTMKAC	4 cut(s)	519, 822, 1448, 1587
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	1 cut(s)	1400
ZrmI	AGTACT	2 cut(s)	100, 1031
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.