Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013873

Physical Location & Seq

Genomic Coordinates Reverse (-)

29106292 .. 29108139

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1194200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGCCTTCCACGGCAACAGTGGCAGCTACAGGTACACGGGTTAAGCCTGTTACTAGTACTACAAGACACCGCCGGCTTTCTTCTTTAAACTCTTCAAATTCCTTTAGAAATCAATTGGGATTTTCCCCCTCTTCTTCCTCAATTTTCAAATCAAAAACCATCTCTTGCTCTCTGCAAACACCTTCTCTAGTCCAAATTCCCAAACACTCCCCTACCTACCAACGACCTTCAACTTCAACTTCCACTAAAATCCCAAGAGAAAATAAGACCCAAAAGTCCCCAACTTCTTCAAAGCCAGTGCCACAACAATGGAACTTGTTACAGAGAGCAGCATCCATGGCTTTGGACGCAATGGAGAGCGCTCTGCTTTCCAAGGAAAAACAACACCCACTTCCCAAAACATCCGACCCAAAAGTCCAAATAGCCGGAAACTTCGCTCCGGTGCCGGAGCACCCTGTCGAACACTATCTACCGGTGACCGGAAAAATCCCCGACTCAATACAAGGCGTCTACGTCCGAAACGGCGCCAACCCACTTCACGAGCCGGTCGCCGGTCACCATCTCTTCGACGGCGACGGCATGGTCCATGCCCTCCAGTTCAAAGACGGAACCGCCAGCTACGCTTGCAGGTTCACCGAAACCAGCCGTATCAGCCAAGAACGTGACCTCGGCCGTCCCCTATTTCCCAAAGCCATTGGCGAGCTACACGGCCACTCCGGCATCGCCCGCCTCCTCCTTTTCTACGCCCGAGGGATGTTCGGGCTCGTGGACCCCACCCACGGCATCGGCGTCGCGAACGCCGGCCTCGTCTACCACAACGGCCATCTTCTCGCCATGTCGGAAGACGACTTGCCGTACCACGTCCAAATCACCGAAACAGGAGACCTCAAAACGGTCGGCCGCTACGACTTCGAAGGGCAGCTGAAGTCCACAATGATCGCCCACCCGAAGGTTGACCCCGCCACGGGGGACCTCTTCGCGCTCAGCTACGACGTCGTTCAGAGGCCTTACTTGAAATACTTCAAATTCTCCCCAAACGGCGAGAAGTCCCCCGACATCGAAATCAACCTCGAGCAGCCCACCATGATGCACGACTTCGCCATTACCGAACGACACGTCGTAATCCCCGACCAGCAGGTGGTGTTCAAGCTGCAGGAGATGATCGGCGGTGGGTCCCCCGTGATTTACGACAAAAACAAGATGTCTCGTTTTGGGATCCTCGACAAGAATGCCAAGGACGCATCGGGAATCCGGTGGGTCGACTGCCCCGACTGCTTCTGCTTCCACCTCTGGAACGCGTGGGAGGAGCCGGAGACGGACGAGATCGTCGTTATCGGCTCGTGCATGACGCCGCCGGACTCCATTTTCAATGAATGCGACGAGAATTTAGAGAGTGTTCTGTCCGAAATCCGGCTCAATTTGAAAACCGGCAAGTCGACGCGCCGCCGCATTTGCTCCGAGAATCTGAACCTGGAAGCTGGGATGGTGAACCGGAACAAGCTAGGGAGAAAAACCCAGTCCGCGTATTTGGCCCTGGCGGAGCCGTGGCCGAAAGTTTCGGGTTTTGCGAAGGTGGACCTCTCCACTGGTGAGGTGAAGAAGCATATCTACGGTGACGAGAAGTACGGTGGCGAACCTCTGTTTCTTCCCAGGGACCCCAACTCGGAGGACGAGGACGATGGTTACATTTTGGCCTTCGTTCACGACGAGAAGAAGTGGAAGTCGGAGCTGCAAATCGTGAACACCATGGATTTGAAGGTGGAAGCTACAATTCAGCTGCCCTCGAGAGTTCCGTACGGTTTTCATGGAACGTTTATAAGCGCTAAGGACTTGAAGAAGCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

616

Amino Acids

68.33

Weight (kDa)

7.09

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	146 - 607	1.4e-129	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78390
fragaria_vesca	FvH4_3g16730
malus_domestica	MD05G1207300.v1.1 MD10G1194200.v1.1
prunus_persica	Prupe.4G150100_v2.0.a1
pyrus_communis	pycom05g19340 pycom10g16810
rosa_chinensis	RchiOBHm_Chr5g0027901
rosa_laevigata	RLG00000033052
rosa_multiflora	Rmu_sc0000309.1_g000029
rosa_roxburghii	Rroxscaffold_1G00051730
rosa_rugosa	Rorug05G0102400.1
rosa_samantha	Rh5AG196700 Rh5BG194600 Rh5CG214600 Rh5DG196300
rosa_wichuraiana	Rw5G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1817
AarI	CACCTGC	1 cut(s)	1126
AasI	GACNNNNNNGTC	4 cut(s)	274, 413, 581, 1325
AatII	GACGTC	1 cut(s)	996
Acc36I	ACCTGC	2 cut(s)	618, 1126
AccB1I	GGYRCC	2 cut(s)	442, 524
AccB7I	CCANNNNNTGG	1 cut(s)	1138
AccI	GTMKAC	4 cut(s)	510, 810, 1260, 1436
AccII	CGCG	5 cut(s)	794, 980, 1298, 1441, 1523
AclI	AACGTT	1 cut(s)	1811
AclWI	GGATC	2 cut(s)	1210, 1223
AcoI	YGGCCR	5 cut(s)	670, 709, 820, 898, 1547
AcsI	RAATTY	4 cut(s)	97, 195, 1025, 1384
AcuI	CTGAAG	1 cut(s)	944
AcyI	GRCGYC	5 cut(s)	507, 525, 789, 993, 1349
AfaI	GTAC	5 cut(s)	34, 58, 857, 1625, 1796
AfeI	AGCGCT	2 cut(s)	361, 1822
AflIII	ACRYGT	2 cut(s)	1114, 1296
AgeI	ACCGGT	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	53
AjiI	CACGTC	2 cut(s)	862, 1117
AjnI	CCWGG	3 cut(s)	1470, 1533, 1649
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	3 cut(s)	876, 1209, 1307
AlwI	GGATC	2 cut(s)	1210, 1223
Ama87I	CYCGRG	3 cut(s)	747, 1070, 1783
Aor51HI	AGCGCT	2 cut(s)	361, 1822
ApeKI	GCWGC	7 cut(s)	23, 329, 919, 1075, 1150, 1729, 1777
ApoI	RAATTY	4 cut(s)	97, 195, 1025, 1384
ArsI	GACNNNNNNTTYG	2 cut(s)	1101, 1133
AsiGI	ACCGGT	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	1019
AspLEI	GCGC	5 cut(s)	362, 527, 982, 1443, 1823
AspS9I	GGNCC	7 cut(s)	583, 769, 970, 1173, 1531, 1576, 1654
AsuHPI	GGTGA	8 cut(s)	487, 548, 625, 862, 1498, 1601, 1606, 1625
AsuII	TTCGAA	1 cut(s)	912
AvaI	CYCGRG	3 cut(s)	747, 1070, 1783
AvaII	GGWCC	6 cut(s)	583, 769, 970, 1173, 1576, 1654
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BamHI	GGATCC	1 cut(s)	1215
BanI	GGYRCC	2 cut(s)	442, 524
BanII	GRGCYC	1 cut(s)	765
BarI	GAAGNNNNNNTAC	2 cut(s)	1592, 1624
BauI	CACGAG	3 cut(s)	539, 764, 1339
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	7 cut(s)	35, 341, 931, 1087, 1137, 1716, 1764
BccI	CCATC	5 cut(s)	167, 567, 831, 1477, 1673
BcgI	CGANNNNNNTGC	4 cut(s)	772, 806, 1211, 1245
BciT130I	CCWGG	3 cut(s)	1472, 1535, 1651
BcoDI	GTCTC	3 cut(s)	876, 1209, 1307
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	54, 188, 1502
BfmI	CTRYAG	2 cut(s)	27, 1151
BfoI	RGCGCY	3 cut(s)	363, 528, 1824
BfuAI	ACCTGC	2 cut(s)	618, 1126
BglI	GCCNNNNNGGC	1 cut(s)	717
BlpI	GCTNAGC	1 cut(s)	983
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	1472, 1535, 1651
Bme18I	GGWCC	6 cut(s)	583, 769, 970, 1173, 1576, 1654
BmeT110I	CYCGRG	3 cut(s)	747, 1070, 1783
BmgBI	CACGTC	2 cut(s)	862, 1117
BmgT120I	GGNCC	7 cut(s)	583, 769, 970, 1173, 1531, 1576, 1654
BmrFI	CCNGG	3 cut(s)	1472, 1535, 1651
BmrI	ACTGGG	1 cut(s)	1510
BmsI	GCATC	5 cut(s)	341, 729, 792, 1077, 1250
BmuI	ACTGGG	1 cut(s)	1510
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	1824
Bpu1102I	GCTNAGC	1 cut(s)	983
Bpu14I	TTCGAA	1 cut(s)	912
BsaHI	GRCGYC	5 cut(s)	507, 525, 789, 993, 1349
BsaI	GGTCTC	1 cut(s)	876
BsaWI	WCCGGW	5 cut(s)	439, 472, 479, 1251, 1491
BsaXI	ACNNNNNCTCC	2 cut(s)	698, 728
Bse118I	RCCGGY	6 cut(s)	72, 472, 544, 551, 800, 1427
Bse1I	ACTGG	4 cut(s)	296, 595, 1516, 1591
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	1472, 1535, 1651
BseGI	GGATG	4 cut(s)	332, 401, 759, 1488
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	997
BseNI	ACTGG	4 cut(s)	296, 595, 1516, 1591
BseRI	GAGGAG	2 cut(s)	722, 1319
BseX3I	CGGCCG	2 cut(s)	670, 898
BseXI	GCAGC	7 cut(s)	35, 341, 931, 1087, 1137, 1716, 1764
BseYI	CCCAGC	1 cut(s)	1478
Bsh1236I	CGCG	5 cut(s)	794, 980, 1298, 1441, 1523
Bsh1285I	CGRYCG	4 cut(s)	549, 673, 897, 901
BshNI	GGYRCC	2 cut(s)	442, 524
BshTI	ACCGGT	1 cut(s)	472
BsiEI	CGRYCG	4 cut(s)	549, 673, 897, 901
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	3 cut(s)	747, 1070, 1783
BsiWI	CGTACG	1 cut(s)	1794
BslFI	GGGAC	6 cut(s)	262, 660, 983, 1033, 1159, 1667
BsmAI	GTCTC	3 cut(s)	876, 1209, 1307
BsmBI	CGTCTC	1 cut(s)	1307
BsmFI	GGGAC	6 cut(s)	262, 660, 983, 1033, 1159, 1667
BsmI	GAATGC	2 cut(s)	1234, 1379
Bso31I	GGTCTC	1 cut(s)	876
BsoBI	CYCGRG	3 cut(s)	747, 1070, 1783
Bsp119I	TTCGAA	1 cut(s)	912
Bsp1286I	GDGCHC	2 cut(s)	453, 765
Bsp143I	GATC	4 cut(s)	936, 1161, 1215, 1323
Bsp1720I	GCTNAGC	1 cut(s)	983
Bsp19I	CCATGG	2 cut(s)	336, 1746
Bsp68I	TCGCGA	1 cut(s)	794
BspCNI	CTCAG	1 cut(s)	996
BspFNI	CGCG	5 cut(s)	794, 980, 1298, 1441, 1523
BspMAI	CTGCAG	1 cut(s)	1155
BspMI	ACCTGC	2 cut(s)	618, 1126
BspPI	GGATC	2 cut(s)	1210, 1223
BspT104I	TTCGAA	1 cut(s)	912
BspT107I	GGYRCC	2 cut(s)	442, 524
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	6 cut(s)	72, 472, 544, 551, 800, 1427
BsrI	ACTGG	4 cut(s)	296, 595, 1516, 1591
BssAI	RCCGGY	6 cut(s)	72, 472, 544, 551, 800, 1427
BssMI	GATC	4 cut(s)	936, 1161, 1215, 1323
BssNI	GRCGYC	5 cut(s)	507, 525, 789, 993, 1349
BssSI	CACGAG	3 cut(s)	539, 764, 1339
BssT1I	CCWWGG	4 cut(s)	336, 372, 1233, 1746
Bst2BI	CACGAG	3 cut(s)	539, 764, 1339
Bst2UI	CCWGG	3 cut(s)	1472, 1535, 1651
Bst4CI	ACNGT	5 cut(s)	19, 895, 1613, 1628, 1799
Bst6I	CTCTTC	4 cut(s)	97, 136, 569, 980
BstACI	GRCGYC	5 cut(s)	507, 525, 789, 993, 1349
BstBI	TTCGAA	1 cut(s)	912
BstC8I	GCNNGC	7 cut(s)	74, 616, 625, 701, 727, 802, 1842
BstDEI	CTNAG	2 cut(s)	983, 1824
BstDSI	CCRYGG	6 cut(s)	9, 336, 778, 963, 1544, 1746
BstEII	GGTNACC	2 cut(s)	475, 554
BstF5I	GGATG	4 cut(s)	332, 401, 759, 1488
BstFNI	CGCG	5 cut(s)	794, 980, 1298, 1441, 1523
BstH2I	RGCGCY	3 cut(s)	363, 528, 1824
BstHHI	GCGC	5 cut(s)	362, 527, 982, 1443, 1823
BstKTI	GATC	4 cut(s)	939, 1164, 1218, 1326
BstMAI	GTCTC	3 cut(s)	876, 1209, 1307
BstMBI	GATC	4 cut(s)	936, 1161, 1215, 1323
BstMCI	CGRYCG	4 cut(s)	549, 673, 897, 901
BstNI	CCWGG	3 cut(s)	1472, 1535, 1651
BstPI	GGTNACC	2 cut(s)	475, 554
BstSCI	CCNGG	3 cut(s)	1470, 1533, 1649
BstSFI	CTRYAG	2 cut(s)	27, 1151
BstUI	CGCG	5 cut(s)	794, 980, 1298, 1441, 1523
BstV1I	GCAGC	7 cut(s)	35, 341, 931, 1087, 1137, 1716, 1764
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	1 cut(s)	1215
BstXI	CCANNNNNNTGG	2 cut(s)	309, 343
BstYI	RGATCY	1 cut(s)	1215
BstZI	CGGCCG	2 cut(s)	670, 898
BtgI	CCRYGG	6 cut(s)	9, 336, 778, 963, 1544, 1746
BtgZI	GCGATG	1 cut(s)	706
BtrI	CACGTC	2 cut(s)	862, 1117
BtsCI	GGATG	4 cut(s)	332, 401, 759, 1488
BtsIMutI	CAGTG	3 cut(s)	24, 303, 1584
BtuMI	TCGCGA	1 cut(s)	794
BveI	ACCTGC	2 cut(s)	618, 1126
Cac8I	GCNNGC	7 cut(s)	74, 616, 625, 701, 727, 802, 1842
CfoI	GCGC	5 cut(s)	362, 527, 982, 1443, 1823
Cfr10I	RCCGGY	6 cut(s)	72, 472, 544, 551, 800, 1427
Cfr13I	GGNCC	7 cut(s)	583, 769, 970, 1173, 1531, 1576, 1654
CseI	GACGC	6 cut(s)	356, 496, 778, 1247, 1357, 1447
Csp6I	GTAC	5 cut(s)	33, 57, 856, 1624, 1795
CspAI	ACCGGT	1 cut(s)	472
CviAII	CATG	8 cut(s)	337, 580, 587, 835, 1084, 1345, 1747, 1805
CviQI	GTAC	5 cut(s)	33, 57, 856, 1624, 1795
DdeI	CTNAG	2 cut(s)	983, 1824
DinI	GGCGCC	1 cut(s)	526
DpnI	GATC	4 cut(s)	938, 1163, 1217, 1325
DpnII	GATC	4 cut(s)	936, 1161, 1215, 1323
DraI	TTTAAA	1 cut(s)	87
DrdI	GACNNNNNNGTC	4 cut(s)	274, 413, 581, 1325
DseDI	GACNNNNNNGTC	4 cut(s)	274, 413, 581, 1325
EaeI	YGGCCR	5 cut(s)	670, 709, 820, 898, 1547
EagI	CGGCCG	2 cut(s)	670, 898
Eam1104I	CTCTTC	4 cut(s)	97, 136, 569, 980
EarI	CTCTTC	4 cut(s)	97, 136, 569, 980
EciI	GGCGGA	1 cut(s)	1553
EclXI	CGGCCG	2 cut(s)	670, 898
Eco130I	CCWWGG	4 cut(s)	336, 372, 1233, 1746
Eco147I	AGGCCT	2 cut(s)	1006, 1844
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	876
Eco47I	GGWCC	6 cut(s)	583, 769, 970, 1173, 1576, 1654
Eco47III	AGCGCT	2 cut(s)	361, 1822
Eco52I	CGGCCG	2 cut(s)	670, 898
Eco57I	CTGAAG	1 cut(s)	944
Eco88I	CYCGRG	3 cut(s)	747, 1070, 1783
Eco91I	GGTNACC	2 cut(s)	475, 554
EcoO109I	RGGNCCY	3 cut(s)	970, 1173, 1654
EcoO65I	GGTNACC	2 cut(s)	475, 554
EcoRII	CCWGG	3 cut(s)	1470, 1533, 1649
EcoT14I	CCWWGG	4 cut(s)	336, 372, 1233, 1746
EcoT38I	GRGCYC	1 cut(s)	765
EgeI	GGCGCC	1 cut(s)	526
EheI	GGCGCC	1 cut(s)	526
ErhI	CCWWGG	4 cut(s)	336, 372, 1233, 1746
Esp3I	CGTCTC	1 cut(s)	1307
FaeI	CATG	8 cut(s)	340, 583, 590, 838, 1087, 1348, 1750, 1808
FaqI	GGGAC	6 cut(s)	262, 660, 983, 1033, 1159, 1667
FatI	CATG	8 cut(s)	336, 579, 586, 834, 1083, 1344, 1746, 1804
FauI	CCCGC	2 cut(s)	734, 967
FblI	GTMKAC	4 cut(s)	510, 810, 1260, 1436
FokI	GGATG	4 cut(s)	319, 388, 766, 1495
FriOI	GRGCYC	1 cut(s)	765
FspBI	CTAG	3 cut(s)	54, 188, 1502
GlaI	GCGC	5 cut(s)	361, 526, 981, 1442, 1822
GsaI	CCCAGC	1 cut(s)	1482
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	3 cut(s)	363, 528, 1824
HgaI	GACGC	6 cut(s)	356, 496, 778, 1247, 1357, 1447
HhaI	GCGC	5 cut(s)	362, 527, 982, 1443, 1823
Hin1I	GRCGYC	5 cut(s)	507, 525, 789, 993, 1349
Hin1II	CATG	8 cut(s)	340, 583, 590, 838, 1087, 1348, 1750, 1808
Hin6I	GCGC	5 cut(s)	360, 525, 980, 1441, 1821
HinP1I	GCGC	5 cut(s)	360, 525, 980, 1441, 1821
HincII	GTYRAC	3 cut(s)	955, 1261, 1437
HindII	GTYRAC	3 cut(s)	955, 1261, 1437
HinfI	GANTC	4 cut(s)	494, 1248, 1358, 1462
HphI	GGTGA	8 cut(s)	487, 548, 625, 862, 1498, 1601, 1606, 1625
Hpy188I	TCNGA	9 cut(s)	406, 518, 841, 1002, 1405, 1459, 1467, 1666, 1726
Hpy188III	TCNNGA	7 cut(s)	539, 793, 1245, 1291, 1703, 1738, 1785
HpyAV	CCTTC	8 cut(s)	15, 192, 237, 908, 943, 1564, 1705, 1750
HpyCH4III	ACNGT	5 cut(s)	19, 895, 1613, 1628, 1799
HpyCH4IV	ACGT	6 cut(s)	513, 661, 861, 993, 1116, 1811
HpyCH4V	TGCA	6 cut(s)	175, 627, 1090, 1153, 1344, 1732
HpyF3I	CTNAG	2 cut(s)	983, 1824
HpySE526I	ACGT	6 cut(s)	513, 661, 861, 993, 1116, 1811
Hsp92I	GRCGYC	5 cut(s)	507, 525, 789, 993, 1349
Hsp92II	CATG	8 cut(s)	340, 583, 590, 838, 1087, 1348, 1750, 1808
HspAI	GCGC	5 cut(s)	360, 525, 980, 1441, 1821
KasI	GGCGCC	1 cut(s)	524
KflI	GGGWCCC	2 cut(s)	1173, 1654
KroI	GCCGGC	2 cut(s)	72, 800
KroNI	GCCGGC	2 cut(s)	74, 802
Kzo9I	GATC	4 cut(s)	936, 1161, 1215, 1323
LmnI	GCTCC	6 cut(s)	442, 448, 1306, 1460, 1540, 1726
Lsp1109I	GCAGC	7 cut(s)	35, 341, 931, 1087, 1137, 1716, 1764
LweI	GCATC	5 cut(s)	341, 729, 792, 1077, 1250
MaeI	CTAG	3 cut(s)	54, 188, 1502
MaeII	ACGT	6 cut(s)	513, 661, 861, 993, 1116, 1811
MaeIII	GTNAC	7 cut(s)	49, 318, 475, 554, 662, 1613, 1682
MalI	GATC	4 cut(s)	938, 1163, 1217, 1325
MboI	GATC	4 cut(s)	936, 1161, 1215, 1323
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	1215
MhlI	GDGCHC	2 cut(s)	453, 765
MluCI	AATT	8 cut(s)	97, 113, 141, 195, 1025, 1384, 1417, 1770
MluI	ACGCGT	1 cut(s)	1296
Mly113I	GGCGCC	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	488, 1352
MmeI	TCCRAC	3 cut(s)	429, 819, 1704
MroNI	GCCGGC	2 cut(s)	72, 800
MroXI	GAANNNNTTC	1 cut(s)	1019
MseI	TTAA	2 cut(s)	42, 86
MslI	CAYNNNNRTG	2 cut(s)	307, 1085
MspA1I	CMGCKG	2 cut(s)	922, 1777
MspR9I	CCNGG	3 cut(s)	1472, 1535, 1651
MunI	CAATTG	1 cut(s)	113
Mva1269I	GAATGC	2 cut(s)	1234, 1379
MvaI	CCWGG	3 cut(s)	1472, 1535, 1651
MvnI	CGCG	5 cut(s)	794, 980, 1298, 1441, 1523
NaeI	GCCGGC	2 cut(s)	74, 802
NarI	GGCGCC	1 cut(s)	525
NcoI	CCATGG	2 cut(s)	336, 1746
NdeII	GATC	4 cut(s)	936, 1161, 1215, 1323
NgoMIV	GCCGGC	2 cut(s)	72, 800
NlaIII	CATG	8 cut(s)	340, 583, 590, 838, 1087, 1348, 1750, 1808
NmeAIII	GCCGAG	1 cut(s)	648
NmuCI	GTSAC	4 cut(s)	475, 554, 662, 1613
NruI	TCGCGA	1 cut(s)	794
NspV	TTCGAA	1 cut(s)	912
PaeR7I	CTCGAG	2 cut(s)	1070, 1783
PaqCI	CACCTGC	1 cut(s)	1126
PasI	CCCWGGG	1 cut(s)	1650
PceI	AGGCCT	2 cut(s)	1006, 1844
PctI	GAATGC	2 cut(s)	1234, 1379
PdiI	GCCGGC	2 cut(s)	74, 802
PdmI	GAANNNNTTC	1 cut(s)	1019
PfeI	GAWTC	2 cut(s)	1248, 1462
Pfl23II	CGTACG	1 cut(s)	1794
PflMI	CCANNNNNTGG	1 cut(s)	1138
PinAI	ACCGGT	1 cut(s)	472
PleI	GAGTC	2 cut(s)	488, 1352
PluTI	GGCGCC	1 cut(s)	528
PpsI	GAGTC	2 cut(s)	488, 1352
PpuMI	RGGWCCY	3 cut(s)	970, 1173, 1654
PsiI	TTATAA	1 cut(s)	1817
Psp1406I	AACGTT	1 cut(s)	1811
Psp5II	RGGWCCY	3 cut(s)	970, 1173, 1654
Psp6I	CCWGG	3 cut(s)	1470, 1533, 1649
PspEI	GGTNACC	2 cut(s)	475, 554
PspFI	CCCAGC	1 cut(s)	1478
PspGI	CCWGG	3 cut(s)	1470, 1533, 1649
PspLI	CGTACG	1 cut(s)	1794
PspPI	GGNCC	7 cut(s)	583, 769, 970, 1173, 1531, 1576, 1654
PspPPI	RGGWCCY	3 cut(s)	970, 1173, 1654
PspXI	VCTCGAGB	1 cut(s)	1070
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PstI	CTGCAG	1 cut(s)	1155
PsuI	RGATCY	1 cut(s)	1215
PvuII	CAGCTG	2 cut(s)	922, 1777
RruI	TCGCGA	1 cut(s)	794
RsaI	GTAC	5 cut(s)	34, 58, 857, 1625, 1796
RsaNI	GTAC	5 cut(s)	33, 57, 856, 1624, 1795
RseI	CAYNNNNRTG	2 cut(s)	307, 1085
SalI	GTCGAC	2 cut(s)	1259, 1435
SaqAI	TTAA	2 cut(s)	42, 86
Sau3AI	GATC	4 cut(s)	936, 1161, 1215, 1323
Sau96I	GGNCC	7 cut(s)	583, 769, 970, 1173, 1531, 1576, 1654
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	2 cut(s)	488, 1352
ScrFI	CCNGG	3 cut(s)	1472, 1535, 1651
SduI	GDGCHC	2 cut(s)	453, 765
SfaNI	GCATC	5 cut(s)	341, 729, 792, 1077, 1250
SfcI	CTRYAG	2 cut(s)	27, 1151
SfoI	GGCGCC	1 cut(s)	526
Sfr274I	CTCGAG	2 cut(s)	1070, 1783
SfuI	TTCGAA	1 cut(s)	912
SinI	GGWCC	6 cut(s)	583, 769, 970, 1173, 1576, 1654
SlaI	CTCGAG	2 cut(s)	1070, 1783
SmiMI	CAYNNNNRTG	2 cut(s)	307, 1085
SmlI	CTYRAG	2 cut(s)	1070, 1783
SmoI	CTYRAG	2 cut(s)	1070, 1783
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	8 cut(s)	97, 113, 141, 195, 1025, 1384, 1417, 1770
SseBI	AGGCCT	2 cut(s)	1006, 1844
SspDI	GGCGCC	1 cut(s)	524
SspMI	CTAG	3 cut(s)	54, 188, 1502
StuI	AGGCCT	2 cut(s)	1006, 1844
StyD4I	CCNGG	3 cut(s)	1470, 1533, 1649
StyI	CCWWGG	4 cut(s)	336, 372, 1233, 1746
TaaI	ACNGT	5 cut(s)	19, 895, 1613, 1628, 1799
TaiI	ACGT	6 cut(s)	516, 664, 864, 996, 1119, 1814
TaqI	TCGA	9 cut(s)	459, 567, 912, 1059, 1071, 1221, 1260, 1436, 1784
TasI	AATT	8 cut(s)	97, 113, 141, 195, 1025, 1384, 1417, 1770
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	4 cut(s)	903, 1354, 1446, 1449
TfiI	GAWTC	2 cut(s)	1248, 1462
Tru1I	TTAA	2 cut(s)	42, 86
Tru9I	TTAA	2 cut(s)	42, 86
TscAI	CASTG	3 cut(s)	24, 303, 1591
TseFI	GTSAC	4 cut(s)	475, 554, 662, 1613
TseI	GCWGC	7 cut(s)	23, 329, 919, 1075, 1150, 1729, 1777
Tsp45I	GTSAC	4 cut(s)	475, 554, 662, 1613
TspDTI	ATGAA	2 cut(s)	1386, 1793
TspGWI	ACGGA	3 cut(s)	621, 1331, 1782
TspRI	CASTG	3 cut(s)	24, 303, 1591
Van91I	CCANNNNNTGG	1 cut(s)	1138
VpaK11BI	GGWCC	6 cut(s)	583, 769, 970, 1173, 1576, 1654
XapI	RAATTY	4 cut(s)	97, 195, 1025, 1384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XhoI	CTCGAG	2 cut(s)	1070, 1783
XmiI	GTMKAC	4 cut(s)	510, 810, 1260, 1436
XmnI	GAANNNNTTC	1 cut(s)	1019
XspI	CTAG	3 cut(s)	54, 188, 1502
ZraI	GACGTC	1 cut(s)	994
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.