Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013873

Physical Location & Seq

Genomic Coordinates Forward (+)

21801789 .. 21804624

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGCCTTCCACTGCCGCAACAGCTACTACTTCAGGCACATGGGTGGTTAACCAAAAGAGATTCCTTTCTTCATCAAGTAGAAGAGATTTGGGTGCTACTTCTTTCTCAGTTTCAAGCCCCAAAAACACAAACACAATCACTTGCTCTCTACAAACACCCTCCTTCCTCCAATTTCCCAAACAAGCCCCAACCTACACGCAGCCATCACCATCTACTACCATTTTACCTAAAACCCCAAAAGATCAAAAACCCCAAACTTCTTCTTCTCCAAATTCTAAGCCCCTTGCACAGCCCCAATGGAATTTACTTCAGAGAGCAGCGGCCATGGCCATAGACGCAATGGAGAGTGCTTTGGTGTCAAAAGAGCTCGAACACCCACTCCCCAAAACCGCAGACCCAAAAGTCCAAATCGCCGGAAACTTTGCTCCGGTGCCGGAACAACCCGTCCAACACTCACTTCCCGTCACCGGACAAATCCCCAAATGCATTCGCGGCGTCTACGTCCGAAACGGCGCGAACCCACTTCACGAGCCGGTCGCCGGTCACCACCTCTTCGACGGAGACGGCATGGTTCACGCCCTGAACTTCAACTCCGACGGGACCGCCAGCTACTCCTGCAGGTTCACCGAAACGCACCGGATGGTCCAGGAGCGGGCTCTGGGCCGGCCCATGTTCCCCAAAGCCATTGGCGAACTCCACGGCCACTCTGGCATCGCCCGATTGGCTCTCTTCTACTTACGTGGGGCCTGCGGGCTCGTGGACCCCAGCCACGGAATCGGCGTCGCCAACGCCGGCCTCGTTTACTTCAACGGCCGGTTGCTGGCCATGTCCGAAGACGACTTGCCGTACCAAGTGAAAATCACGAAAACAGGGGACCTCAAAACCGTCGGGAGATACGACTTCGAGGACCAGCTCAAGTCCACCATGATCGCCCACCCCAAAGTGGACCCCGCCACCGGCGAACTCTTCGCGCTGAGCTACGACGTCGTCCAGAAGCCGTACCTCAAGTACTTCAAATTCTCCCCAAACGGCACCAAGTCCCCTGACGTAGAAATTCCTCTGGGCCAGCCCACCATGATGCACGACTTCGCCATTACCGAACGGTTCGTCGTAATCCCGGACCAGCAGGTCGTCTTCAACCTCCCGGAGATGATCCGCGGTGGGTCCCCGGTGATTTACGACAAGAACAAGATTGCCCGGTTCGGAATTCTCGACAAGAATGCGAGCGACGCTTCTGGAATCAGATGGGTCGAAGCGCCTGATTGCTTCTGCTTCCATCTCTGGAATGCTTGGGAAGAGCCCGAGACTGACGAGGTCGTGGTGATCGGGTCGTGTATGACTCCACCCGACTCCATTTTCAACGAATGCGACGAGAATTTACAGAGCGTTTTGTCGGAAATACGTCTCAATTTGAAAACTGGGAAGTCTACACGTCGGGCAATCTGTTCCGAGCAGGTGAATTTGGAAGCCGGAATGGTGAACCGGAACAAACTCGGGCGCAAGACCCGGTTCGCGTACTTGGCTCTTGCCGAGCCGTGGCCTAAAGTCTCGGGTTTTGCCAAGGTGGACCTTTTCAGTGGGAAAGTCGAGAAGCACATCTATGGAGAGCAGAGGTTCGGCGGTGAGCCTCTGTTTCTTCCAAGAGACCCGAATTCGGAGAACGAAGACGACGGTTACATTCTCGCATTCGTCCATGATGAAAAGGAATGGAAATCAGAGCTGCAAATTGTTAATGCCATGACTTTGAAGCTCGAAGCTTCAATCAAGTTACCTTCCAGAGTCCCCTACGGTTTCCACGGCACGTTTATAAGTTCCAAGGATTTACAGAAGCAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009687 GO:0009688 GO:0009791 GO:0009987 GO:0010035 GO:0010154 GO:0010162 GO:0010431 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034357 GO:0042221 GO:0042538 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

612

Amino Acids

67.61

Weight (kDa)

7.25

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	141 - 604	2.6e-130	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78390
fragaria_vesca	FvH4_3g16730
malus_domestica	MD05G1207300.v1.1 MD10G1194200.v1.1
prunus_persica	Prupe.4G150100_v2.0.a1
pyrus_communis	pycom05g19340 pycom10g16810
rosa_chinensis	RchiOBHm_Chr5g0027901
rosa_laevigata	RLG00000033052
rosa_multiflora	Rmu_sc0000309.1_g000029
rosa_roxburghii	Rroxscaffold_1G00051730
rosa_rugosa	Rorug05G0102400.1
rosa_samantha	Rh5AG196700 Rh5BG194600 Rh5CG214600 Rh5DG196300
rosa_wichuraiana	Rw5G017900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1808
AarI	CACCTGC	1 cut(s)	1444
AasI	GACNNNNNNGTC	2 cut(s)	401, 1127
AatII	GACGTC	1 cut(s)	987
Acc36I	ACCTGC	3 cut(s)	609, 1117, 1444
AccB1I	GGYRCC	2 cut(s)	430, 1031
AccBSI	CCGCTC	1 cut(s)	652
AccI	GTMKAC	2 cut(s)	498, 1427
AccII	CGCG	5 cut(s)	492, 515, 971, 1158, 1514
AclWI	GGATC	1 cut(s)	1147
AcoI	YGGCCR	5 cut(s)	321, 327, 700, 811, 822
AcsI	RAATTY	8 cut(s)	271, 301, 1016, 1053, 1206, 1375, 1459, 1651
AcuI	CTGAAG	2 cut(s)	15, 293
AcyI	GRCGYC	3 cut(s)	495, 780, 984
AfaI	GTAC	4 cut(s)	848, 1001, 1010, 1517
AfiI	CCNNNNNNNGG	9 cut(s)	467, 539, 652, 770, 820, 943, 956, 1536, 1654
AflIII	ACRYGT	1 cut(s)	1430
AgsI	TTSAA	9 cut(s)	114, 589, 808, 1015, 1138, 1360, 1414, 1747, 1761
AjiI	CACGTC	1 cut(s)	1433
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AleI	CACNNNNGTG	1 cut(s)	41
AloI	GAACNNNNNNTCC	6 cut(s)	363, 395, 429, 461, 575, 607
AluBI	AGCT	8 cut(s)	23, 367, 609, 913, 978, 1720, 1750, 1757
AluI	AGCT	8 cut(s)	23, 367, 609, 913, 978, 1720, 1750, 1757
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	5 cut(s)	555, 1298, 1409, 1552, 1638
AlwI	GGATC	1 cut(s)	1147
Ama87I	CYCGRG	3 cut(s)	1301, 1493, 1549
ApeKI	GCWGC	3 cut(s)	199, 317, 1720
ApoI	RAATTY	8 cut(s)	271, 301, 1016, 1053, 1206, 1375, 1459, 1651
ArsI	GACNNNNNNTTYG	2 cut(s)	1092, 1124
AspLEI	GCGC	4 cut(s)	515, 973, 1258, 1500
AsuC2I	CCSGG	5 cut(s)	1118, 1145, 1169, 1198, 1507
AsuHPI	GGTGA	9 cut(s)	198, 457, 536, 616, 1183, 1333, 1468, 1489, 1634
AvaI	CYCGRG	3 cut(s)	1301, 1493, 1549
AvaII	GGWCC	9 cut(s)	600, 643, 760, 874, 907, 946, 1120, 1164, 1567
BalI	TGGCCA	2 cut(s)	329, 824
BanI	GGYRCC	2 cut(s)	430, 1031
BanII	GRGCYC	4 cut(s)	369, 658, 756, 1302
BauI	CACGAG	2 cut(s)	527, 755
BbsI	GAAGAC	3 cut(s)	840, 1126, 1671
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	211, 329, 1707
BccI	CCATC	5 cut(s)	211, 217, 634, 1239, 1284
BceAI	ACGGC	9 cut(s)	526, 580, 715, 826, 829, 982, 1045, 1519, 1813
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	1 cut(s)	647
BcnI	CCSGG	5 cut(s)	1118, 1145, 1169, 1198, 1507
BcoDI	GTCTC	5 cut(s)	555, 1298, 1409, 1552, 1638
BfmI	CTRYAG	1 cut(s)	616
BfoI	RGCGCY	1 cut(s)	1259
BfuAI	ACCTGC	3 cut(s)	609, 1117, 1444
BglI	GCCNNNNNGGC	2 cut(s)	708, 722
BisI	GCNGC	6 cut(s)	15, 200, 318, 321, 493, 1721
BlpI	GCTNAGC	1 cut(s)	974
BlsI	GCNGC	6 cut(s)	16, 201, 319, 322, 494, 1722
BmcAI	AGTACT	1 cut(s)	1010
Bme1390I	CCNGG	6 cut(s)	647, 1118, 1145, 1169, 1198, 1507
Bme18I	GGWCC	9 cut(s)	600, 643, 760, 874, 907, 946, 1120, 1164, 1567
BmeT110I	CYCGRG	3 cut(s)	1301, 1493, 1549
BmgBI	CACGTC	1 cut(s)	1433
BmiI	GGNNCC	9 cut(s)	432, 601, 745, 762, 875, 948, 1033, 1165, 1166
BmrFI	CCNGG	6 cut(s)	647, 1118, 1145, 1169, 1198, 1507
BmrI	ACTGGG	1 cut(s)	1428
BmsI	GCATC	2 cut(s)	720, 1068
BmuI	ACTGGG	1 cut(s)	1428
BpiI	GAAGAC	3 cut(s)	840, 1126, 1671
Bpu1102I	GCTNAGC	1 cut(s)	974
BpuEI	CTTGAG	2 cut(s)	899, 989
BpuMI	CCSGG	5 cut(s)	1118, 1145, 1169, 1198, 1507
BsaAI	YACGTR	1 cut(s)	740
BsaHI	GRCGYC	3 cut(s)	495, 780, 984
BsaI	GGTCTC	1 cut(s)	1638
BsaJI	CCNNGG	9 cut(s)	324, 697, 769, 1156, 1167, 1535, 1560, 1795, 1815
BsaWI	WCCGGW	4 cut(s)	427, 467, 636, 1482
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 575, 605
Bsc4I	CCNNNNNNNGG	9 cut(s)	467, 539, 652, 770, 820, 943, 956, 1536, 1654
Bse118I	RCCGGY	6 cut(s)	532, 539, 663, 791, 813, 956
Bse1I	ACTGG	1 cut(s)	1423
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	9 cut(s)	324, 697, 769, 1156, 1167, 1535, 1560, 1795, 1815
BseGI	GGATG	1 cut(s)	645
BseLI	CCNNNNNNNGG	9 cut(s)	467, 539, 652, 770, 820, 943, 956, 1536, 1654
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	120, 965
BseNI	ACTGG	1 cut(s)	1423
BseX3I	CGGCCG	1 cut(s)	811
BseXI	GCAGC	3 cut(s)	211, 329, 1707
BseYI	CCCAGC	1 cut(s)	764
Bsh1236I	CGCG	5 cut(s)	492, 515, 971, 1158, 1514
Bsh1285I	CGRYCG	2 cut(s)	537, 814
BshNI	GGYRCC	2 cut(s)	430, 1031
BsiEI	CGRYCG	2 cut(s)	537, 814
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	3 cut(s)	1301, 1493, 1549
BslFI	GGGAC	5 cut(s)	613, 887, 1024, 1150, 1766
BslI	CCNNNNNNNGG	9 cut(s)	467, 539, 652, 770, 820, 943, 956, 1536, 1654
BsmAI	GTCTC	5 cut(s)	555, 1298, 1409, 1552, 1638
BsmBI	CGTCTC	2 cut(s)	555, 1409
BsmFI	GGGAC	5 cut(s)	613, 887, 1024, 1150, 1766
BsmI	GAATGC	5 cut(s)	486, 1225, 1291, 1370, 1685
Bso31I	GGTCTC	1 cut(s)	1638
BsoBI	CYCGRG	3 cut(s)	1301, 1493, 1549
Bsp1286I	GDGCHC	4 cut(s)	369, 658, 756, 1302
Bsp143I	GATC	4 cut(s)	241, 927, 1152, 1323
Bsp1720I	GCTNAGC	1 cut(s)	974
Bsp19I	CCATGG	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	119, 966
BspFNI	CGCG	5 cut(s)	492, 515, 971, 1158, 1514
BspLI	GGNNCC	9 cut(s)	432, 601, 745, 762, 875, 948, 1033, 1165, 1166
BspMAI	CTGCAG	1 cut(s)	620
BspMI	ACCTGC	3 cut(s)	609, 1117, 1444
BspPI	GGATC	1 cut(s)	1147
BspQI	GCTCTTC	1 cut(s)	1290
BspT107I	GGYRCC	2 cut(s)	430, 1031
BspTNI	GGTCTC	1 cut(s)	1638
BsrBI	CCGCTC	1 cut(s)	652
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	6 cut(s)	532, 539, 663, 791, 813, 956
BsrI	ACTGG	1 cut(s)	1423
BssAI	RCCGGY	6 cut(s)	532, 539, 663, 791, 813, 956
BssECI	CCNNGG	9 cut(s)	324, 697, 769, 1156, 1167, 1535, 1560, 1795, 1815
BssMI	GATC	4 cut(s)	241, 927, 1152, 1323
BssNI	GRCGYC	3 cut(s)	495, 780, 984
BssSI	CACGAG	2 cut(s)	527, 755
BssT1I	CCWWGG	3 cut(s)	324, 1560, 1815
Bst2BI	CACGAG	2 cut(s)	527, 755
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	886, 1104, 1673, 1790
Bst6I	CTCTTC	5 cut(s)	76, 557, 734, 971, 1290
BstACI	GRCGYC	3 cut(s)	495, 780, 984
BstBAI	YACGTR	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	106, 276, 974
BstDSI	CCRYGG	6 cut(s)	324, 697, 769, 1156, 1535, 1795
BstEII	GGTNACC	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	645
BstFNI	CGCG	5 cut(s)	492, 515, 971, 1158, 1514
BstH2I	RGCGCY	1 cut(s)	1259
BstHHI	GCGC	4 cut(s)	515, 973, 1258, 1500
BstKTI	GATC	4 cut(s)	244, 930, 1155, 1326
BstMAI	GTCTC	5 cut(s)	555, 1298, 1409, 1552, 1638
BstMBI	GATC	4 cut(s)	241, 927, 1152, 1323
BstMCI	CGRYCG	2 cut(s)	537, 814
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 326, 335, 492, 615, 708, 722, 1229, 1520
BstNI	CCWGG	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	542
BstSCI	CCNGG	6 cut(s)	645, 1116, 1143, 1167, 1196, 1505
BstSFI	CTRYAG	1 cut(s)	616
BstUI	CGCG	5 cut(s)	492, 515, 971, 1158, 1514
BstV1I	GCAGC	3 cut(s)	211, 329, 1707
BstV2I	GAAGAC	3 cut(s)	840, 1126, 1671
BstZI	CGGCCG	1 cut(s)	811
BtgI	CCRYGG	6 cut(s)	324, 697, 769, 1156, 1535, 1795
BtgZI	GCGATG	1 cut(s)	697
BtrI	CACGTC	1 cut(s)	1433
BtsCI	GGATG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 1582
BveI	ACCTGC	3 cut(s)	609, 1117, 1444
CfoI	GCGC	4 cut(s)	515, 973, 1258, 1500
Cfr10I	RCCGGY	6 cut(s)	532, 539, 663, 791, 813, 956
Cfr42I	CCGCGG	1 cut(s)	1159
CseI	GACGC	4 cut(s)	344, 484, 769, 1238
Csp6I	GTAC	4 cut(s)	847, 1000, 1009, 1516
CviAII	CATG	9 cut(s)	39, 325, 568, 670, 826, 925, 1075, 1694, 1738
CviQI	GTAC	4 cut(s)	847, 1000, 1009, 1516
DdeI	CTNAG	3 cut(s)	106, 276, 974
DpnI	GATC	4 cut(s)	243, 929, 1154, 1325
DpnII	GATC	4 cut(s)	241, 927, 1152, 1323
DrdI	GACNNNNNNGTC	2 cut(s)	401, 1127
DseDI	GACNNNNNNGTC	2 cut(s)	401, 1127
EaeI	YGGCCR	5 cut(s)	321, 327, 700, 811, 822
EagI	CGGCCG	1 cut(s)	811
Eam1104I	CTCTTC	5 cut(s)	76, 557, 734, 971, 1290
EarI	CTCTTC	5 cut(s)	76, 557, 734, 971, 1290
Ecl136II	GAGCTC	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	811
Eco130I	CCWWGG	3 cut(s)	324, 1560, 1815
Eco24I	GRGCYC	4 cut(s)	369, 658, 756, 1302
Eco31I	GGTCTC	1 cut(s)	1638
Eco47I	GGWCC	9 cut(s)	600, 643, 760, 874, 907, 946, 1120, 1164, 1567
Eco52I	CGGCCG	1 cut(s)	811
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	15, 293
Eco88I	CYCGRG	3 cut(s)	1301, 1493, 1549
Eco91I	GGTNACC	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	3 cut(s)	744, 874, 1164
EcoO65I	GGTNACC	1 cut(s)	542
EcoRI	GAATTC	2 cut(s)	1206, 1651
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	3 cut(s)	324, 1560, 1815
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	4 cut(s)	369, 658, 756, 1302
ErhI	CCWWGG	3 cut(s)	324, 1560, 1815
Esp3I	CGTCTC	2 cut(s)	555, 1409
FaeI	CATG	9 cut(s)	42, 328, 571, 673, 829, 928, 1078, 1697, 1741
FaqI	GGGAC	5 cut(s)	613, 887, 1024, 1150, 1766
FatI	CATG	9 cut(s)	38, 324, 567, 669, 825, 924, 1074, 1693, 1737
FauI	CCCGC	3 cut(s)	645, 743, 958
FblI	GTMKAC	2 cut(s)	498, 1427
Fnu4HI	GCNGC	6 cut(s)	15, 200, 318, 321, 493, 1721
FokI	GGATG	1 cut(s)	652
FriOI	GRGCYC	4 cut(s)	369, 658, 756, 1302
FseI	GGCCGGCC	1 cut(s)	667
Fsp4HI	GCNGC	6 cut(s)	15, 200, 318, 321, 493, 1721
GlaI	GCGC	4 cut(s)	514, 972, 1257, 1499
GluI	GCNGC	6 cut(s)	15, 200, 318, 321, 493, 1721
GsaI	CCCAGC	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	1259
HgaI	GACGC	4 cut(s)	344, 484, 769, 1238
HhaI	GCGC	4 cut(s)	515, 973, 1258, 1500
Hin1I	GRCGYC	3 cut(s)	495, 780, 984
Hin1II	CATG	9 cut(s)	42, 328, 571, 673, 829, 928, 1078, 1697, 1741
Hin6I	GCGC	4 cut(s)	513, 971, 1256, 1498
HinP1I	GCGC	4 cut(s)	513, 971, 1256, 1498
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	1755
HinfI	GANTC	6 cut(s)	60, 774, 1239, 1339, 1349, 1779
HpaI	GTTAAC	1 cut(s)	49
HphI	GGTGA	9 cut(s)	198, 457, 536, 616, 1183, 1333, 1468, 1489, 1634
Hpy188III	TCNNGA	9 cut(s)	527, 862, 889, 991, 1211, 1236, 1282, 1588, 1776
HpyAV	CCTTC	3 cut(s)	15, 172, 1782
HpyCH4III	ACNGT	4 cut(s)	886, 1104, 1673, 1790
HpyCH4IV	ACGT	7 cut(s)	501, 739, 984, 1047, 1402, 1432, 1802
HpyCH4V	TGCA	5 cut(s)	287, 486, 618, 1081, 1723
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 326, 335, 492, 615, 708, 722, 1229, 1520
HpyF3I	CTNAG	3 cut(s)	106, 276, 974
HpySE526I	ACGT	7 cut(s)	501, 739, 984, 1047, 1402, 1432, 1802
Hsp92I	GRCGYC	3 cut(s)	495, 780, 984
Hsp92II	CATG	9 cut(s)	42, 328, 571, 673, 829, 928, 1078, 1697, 1741
HspAI	GCGC	4 cut(s)	513, 971, 1256, 1498
KflI	GGGWCCC	1 cut(s)	1164
KroI	GCCGGC	2 cut(s)	663, 791
KroNI	GCCGGC	2 cut(s)	665, 793
KspAI	GTTAAC	1 cut(s)	49
KspI	CCGCGG	1 cut(s)	1159
Kzo9I	GATC	4 cut(s)	241, 927, 1152, 1323
LguI	GCTCTTC	1 cut(s)	1290
LmnI	GCTCC	2 cut(s)	430, 649
Lsp1109I	GCAGC	3 cut(s)	211, 329, 1707
LweI	GCATC	2 cut(s)	720, 1068
MaeII	ACGT	7 cut(s)	501, 739, 984, 1047, 1402, 1432, 1802
MaeIII	GTNAC	4 cut(s)	463, 542, 1673, 1767
MalI	GATC	4 cut(s)	243, 929, 1154, 1325
MbiI	CCGCTC	1 cut(s)	652
MboI	GATC	4 cut(s)	241, 927, 1152, 1323
MhlI	GDGCHC	4 cut(s)	369, 658, 756, 1302
MlsI	TGGCCA	2 cut(s)	329, 824
MluNI	TGGCCA	2 cut(s)	329, 824
MlyI	GAGTC	3 cut(s)	1333, 1343, 1788
MmeI	TCCRAC	3 cut(s)	472, 618, 1374
Mox20I	TGGCCA	2 cut(s)	329, 824
Mph1103I	ATGCAT	1 cut(s)	488
MroNI	GCCGGC	2 cut(s)	663, 791
MscI	TGGCCA	2 cut(s)	329, 824
MseI	TTAA	3 cut(s)	48, 1731, 1837
MslI	CAYNNNNRTG	3 cut(s)	41, 1076, 1599
Msp20I	TGGCCA	2 cut(s)	329, 824
MspA1I	CMGCKG	2 cut(s)	320, 1158
MspR9I	CCNGG	6 cut(s)	647, 1118, 1145, 1169, 1198, 1507
Mva1269I	GAATGC	5 cut(s)	486, 1225, 1291, 1370, 1685
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	5 cut(s)	492, 515, 971, 1158, 1514
MwoI	GCNNNNNNNGC	9 cut(s)	20, 326, 335, 492, 615, 708, 722, 1229, 1520
NaeI	GCCGGC	2 cut(s)	665, 793
NciI	CCSGG	5 cut(s)	1118, 1145, 1169, 1198, 1507
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	241, 927, 1152, 1323
NgoMIV	GCCGGC	2 cut(s)	663, 791
NlaIII	CATG	9 cut(s)	42, 328, 571, 673, 829, 928, 1078, 1697, 1741
NlaIV	GGNNCC	9 cut(s)	432, 601, 745, 762, 875, 948, 1033, 1165, 1166
NmeAIII	GCCGAG	1 cut(s)	1555
NmuCI	GTSAC	2 cut(s)	463, 542
NsiI	ATGCAT	1 cut(s)	488
OliI	CACNNNNGTG	1 cut(s)	41
PaqCI	CACCTGC	1 cut(s)	1444
PciSI	GCTCTTC	1 cut(s)	1290
PcsI	WCGNNNNNNNCGW	6 cut(s)	777, 795, 894, 1095, 1209, 1368
PctI	GAATGC	5 cut(s)	486, 1225, 1291, 1370, 1685
PdiI	GCCGGC	2 cut(s)	665, 793
PfeI	GAWTC	3 cut(s)	60, 774, 1239
PflFI	GACNNNGTC	2 cut(s)	986, 1313
PfoI	TCCNGGA	3 cut(s)	645, 1116, 1143
PkrI	GCNGC	6 cut(s)	16, 201, 319, 322, 494, 1722
PleI	GAGTC	3 cut(s)	1333, 1343, 1787
PpsI	GAGTC	3 cut(s)	1333, 1343, 1787
Ppu21I	YACGTR	1 cut(s)	740
PpuMI	RGGWCCY	2 cut(s)	874, 1164
PsiI	TTATAA	1 cut(s)	1808
Psp124BI	GAGCTC	1 cut(s)	369
Psp5II	RGGWCCY	2 cut(s)	874, 1164
Psp6I	CCWGG	1 cut(s)	645
PspEI	GGTNACC	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	9 cut(s)	432, 601, 745, 762, 875, 948, 1033, 1165, 1166
PspPPI	RGGWCCY	2 cut(s)	874, 1164
PstI	CTGCAG	1 cut(s)	620
PsyI	GACNNNGTC	2 cut(s)	986, 1313
RigI	GGCCGGCC	1 cut(s)	667
RsaI	GTAC	4 cut(s)	848, 1001, 1010, 1517
RsaNI	GTAC	4 cut(s)	847, 1000, 1009, 1516
RseI	CAYNNNNRTG	3 cut(s)	41, 1076, 1599
SacI	GAGCTC	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	1159
SapI	GCTCTTC	1 cut(s)	1290
SaqAI	TTAA	3 cut(s)	48, 1731, 1837
SatI	GCNGC	6 cut(s)	15, 200, 318, 321, 493, 1721
Sau3AI	GATC	4 cut(s)	241, 927, 1152, 1323
SbfI	CCTGCAGG	1 cut(s)	620
ScaI	AGTACT	1 cut(s)	1010
SchI	GAGTC	3 cut(s)	1333, 1343, 1788
ScrFI	CCNGG	6 cut(s)	647, 1118, 1145, 1169, 1198, 1507
SdaI	CCTGCAGG	1 cut(s)	620
SduI	GDGCHC	4 cut(s)	369, 658, 756, 1302
SfaNI	GCATC	2 cut(s)	720, 1068
SfcI	CTRYAG	1 cut(s)	616
Sfr303I	CCGCGG	1 cut(s)	1159
SgrAI	CRCCGGYG	1 cut(s)	956
SgrBI	CCGCGG	1 cut(s)	1159
SinI	GGWCC	9 cut(s)	600, 643, 760, 874, 907, 946, 1120, 1164, 1567
SmiMI	CAYNNNNRTG	3 cut(s)	41, 1076, 1599
SmlI	CTYRAG	2 cut(s)	914, 1004
SmoI	CTYRAG	2 cut(s)	914, 1004
Sse8387I	CCTGCAGG	1 cut(s)	620
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	6 cut(s)	645, 1116, 1143, 1167, 1196, 1505
StyI	CCWWGG	3 cut(s)	324, 1560, 1815
TaaI	ACNGT	4 cut(s)	886, 1104, 1673, 1790
TaiI	ACGT	7 cut(s)	504, 742, 987, 1050, 1405, 1435, 1805
TaqI	TCGA	7 cut(s)	369, 555, 903, 1212, 1251, 1587, 1752
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	3 cut(s)	17, 323, 495
TfiI	GAWTC	3 cut(s)	60, 774, 1239
Tru1I	TTAA	3 cut(s)	48, 1731, 1837
Tru9I	TTAA	3 cut(s)	48, 1731, 1837
TscAI	CASTG	2 cut(s)	16, 1582
TseFI	GTSAC	2 cut(s)	463, 542
TseI	GCWGC	3 cut(s)	199, 317, 1720
Tsp45I	GTSAC	2 cut(s)	463, 542
TspDTI	ATGAA	2 cut(s)	60, 1713
TspGWI	ACGGA	2 cut(s)	573, 786
TspRI	CASTG	2 cut(s)	16, 1582
Tth111I	GACNNNGTC	2 cut(s)	986, 1313
VpaK11BI	GGWCC	9 cut(s)	600, 643, 760, 874, 907, 946, 1120, 1164, 1567
XapI	RAATTY	8 cut(s)	271, 301, 1016, 1053, 1206, 1375, 1459, 1651
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 704
XmiI	GTMKAC	2 cut(s)	498, 1427
ZraI	GACGTC	1 cut(s)	985
ZrmI	AGTACT	1 cut(s)	1010
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.