FvH4_3g18772

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
12071517 .. 12072252
736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18772.t1

Sequence Viewer

Length: 636 bp
ATGGCAGCACCTCACACCTCCGCCACCTCTACTGGGCAGCACCTCATGCCTCCGCCACCTCACCTCACACCTCCACCACCTCGACTTCACAGCACCTCCGCCACCTCGCTTCGAGAACTGGGCAGCACCTCGCCTCTCTCGCCGTCAACCTCGCCTCTCTCAGTCTCTCGATTCGACACCTCGACTCGGCACTCAGCAGCACCTCGCACCTCCGCCACCTCACCTCACACCTCCACCACCTCGACTTCACAGCACCTTCGCCACCTCGCTTCGAGAACTGGGCAGCACCTCGCCTCTCTCGCAATCGACTCGGCAGCACCAAGGGCAGCGCCTCGACTCGGCAGCGCCAAGGGCAGCTCCTCGACTCTCCGACGAAGAAGCCATCGGCTCCGTTCAAGAAGCCTTTCGCCAAGCCTTGTTCGAGACTTGTTCCTCCACAGACAACCTATCTTTCTTCACTCTCAGGTTTCAAACACCAAAATACGATTGCTTTTGGGAAATGGGTATTCAGGGAATCGTCGATACAGTGTCTTCAATGAGTTCTCGAAGCAAGTCAAGGAGGAAACTAATAAGTACTTCCTATTCCCTCTCACTATATCTTGCATTTGTAATGTTGATTTGGGTGTGTGTAGTTGA

Protein Analysis

212

Amino Acids

22.9

Weight (kDa)

11.55

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018818)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18772 FvH4_4g16331
rosa_laevigata RLG00000032031 RLG00000032034
rosa_multiflora Rmu_sc0002573.1_g000018
rosa_samantha Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana Rw5G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 21, 53, 99, 213
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 3 cut(s) 33, 186, 338
AgsI TTSAA 3 cut(s) 396, 471, 535
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 169, 417
ApeKI GCWGC 9 cut(s) 5, 37, 123, 197, 283, 314, 326, 342, 354
Asp700I GAANNNNTTC 1 cut(s) 403
AspLEI GCGC 2 cut(s) 331, 347
AsuHPI GGTGA 2 cut(s) 53, 213
BbsI GAAGAC 1 cut(s) 523
BbvI GCAGC 9 cut(s) 17, 49, 135, 209, 295, 326, 338, 354, 366
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BcoDI GTCTC 2 cut(s) 169, 417
BfoI RGCGCY 2 cut(s) 332, 348
BisI GCNGC 9 cut(s) 6, 38, 124, 198, 284, 315, 327, 343, 355
BlsI GCNGC 9 cut(s) 7, 39, 125, 199, 285, 316, 328, 344, 356
BmcAI AGTACT 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 389
BmrI ACTGGG 3 cut(s) 42, 128, 288
BmuI ACTGGG 3 cut(s) 42, 128, 288
BpiI GAAGAC 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 320, 348
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 186, 338
Bse1I ACTGG 3 cut(s) 37, 123, 283
BseDI CCNNGG 2 cut(s) 320, 348
BseLI CCNNNNNNNGG 3 cut(s) 33, 186, 338
BseMII CTCAG 3 cut(s) 174, 207, 476
BseNI ACTGG 3 cut(s) 37, 123, 283
BseRI GAGGAG 1 cut(s) 349
BseXI GCAGC 9 cut(s) 17, 49, 135, 209, 295, 326, 338, 354, 366
BslI CCNNNNNNNGG 3 cut(s) 33, 186, 338
BsmAI GTCTC 2 cut(s) 169, 417
BspACI CCGC 4 cut(s) 21, 53, 99, 213
BspCNI CTCAG 3 cut(s) 173, 206, 475
BspLI GGNNCC 1 cut(s) 389
BsrI ACTGG 3 cut(s) 37, 123, 283
BssECI CCNNGG 2 cut(s) 320, 348
BssT1I CCWWGG 2 cut(s) 320, 348
Bst4CI ACNGT 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 160, 193, 462
BstH2I RGCGCY 2 cut(s) 332, 348
BstHHI GCGC 2 cut(s) 331, 347
BstMAI GTCTC 2 cut(s) 169, 417
BstMWI GCNNNNNNNGC 5 cut(s) 46, 139, 299, 323, 351
BstV1I GCAGC 9 cut(s) 17, 49, 135, 209, 295, 326, 338, 354, 366
BstV2I GAAGAC 1 cut(s) 523
BtsIMutI CAGTG 1 cut(s) 532
CfoI GCGC 2 cut(s) 331, 347
Csp6I GTAC 1 cut(s) 574
CviAII CATG 1 cut(s) 46
CviJI RGCY 5 cut(s) 357, 381, 388, 402, 414
CviKI_1 RGCY 5 cut(s) 357, 381, 388, 402, 414
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 3 cut(s) 160, 193, 462
EciI GGCGGA 4 cut(s) 10, 42, 88, 202
Eco130I CCWWGG 2 cut(s) 320, 348
EcoT14I CCWWGG 2 cut(s) 320, 348
ErhI CCWWGG 2 cut(s) 320, 348
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 596
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 9 cut(s) 6, 38, 124, 198, 284, 315, 327, 343, 355
Fsp4HI GCNGC 9 cut(s) 6, 38, 124, 198, 284, 315, 327, 343, 355
GlaI GCGC 2 cut(s) 330, 346
GluI GCNGC 9 cut(s) 6, 38, 124, 198, 284, 315, 327, 343, 355
HaeII RGCGCY 2 cut(s) 332, 348
HhaI GCGC 2 cut(s) 331, 347
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 2 cut(s) 329, 345
HinP1I GCGC 2 cut(s) 329, 345
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 6 cut(s) 171, 184, 308, 336, 364, 514
HphI GGTGA 2 cut(s) 53, 213
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 371
Hpy188III TCNNGA 6 cut(s) 113, 168, 273, 396, 422, 544
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 2 cut(s) 375, 522
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4V TGCA 1 cut(s) 603
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 139, 299, 323, 351
HpyF3I CTNAG 3 cut(s) 160, 193, 462
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 2 cut(s) 329, 345
LmnI GCTCC 2 cut(s) 362, 393
LpnPI CCDG 5 cut(s) 18, 104, 264, 449, 495
Lsp1109I GCAGC 9 cut(s) 17, 49, 135, 209, 295, 326, 338, 354, 366
MboII GAAGA 3 cut(s) 387, 446, 523
MlyI GAGTC 4 cut(s) 178, 302, 330, 358
MmeI TCCRAC 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 403
MwoI GCNNNNNNNGC 5 cut(s) 46, 139, 299, 323, 351
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 389
NmeAIII GCCGAG 3 cut(s) 166, 290, 318
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 171, 514
PkrI GCNGC 9 cut(s) 7, 39, 125, 199, 285, 316, 328, 344, 356
PleI GAGTC 4 cut(s) 178, 302, 330, 358
PpsI GAGTC 4 cut(s) 178, 302, 330, 358
PspN4I GGNNCC 1 cut(s) 389
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
SatI GCNGC 9 cut(s) 6, 38, 124, 198, 284, 315, 327, 343, 355
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 4 cut(s) 178, 302, 330, 358
SsiI CCGC 4 cut(s) 21, 53, 99, 213
StyI CCWWGG 2 cut(s) 320, 348
TaaI ACNGT 1 cut(s) 527
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 2 cut(s) 171, 514
TscAI CASTG 1 cut(s) 532
TseI GCWGC 9 cut(s) 5, 37, 123, 197, 283, 314, 326, 342, 354
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 403
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.