Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018818

Physical Location & Seq

Genomic Coordinates Forward (+)

10346291 .. 10346887

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032034

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGGTAGAAAGCTTGTTCGAGATTTGTTCCTCCACAGACAGTCCCTTCTTCAGTCTGAACAACAGGTTTCAGGCACGAAAATTCGATTGCTTTTGGAAAATGGGTATTCCGGGAATCGTCGATTCAGTGTCTTCAATGAGTTTTTGGAGCAGGTGAAGGAGGAAACCAGTAAGAATCCACAATTTAAAAAGACAGCAGTCAAGGAGTCGAAAGAGCAAGTGGAAGAGCTCAAGGGGGTGAAAGTTAGAACGAAGCAGACAACGGAGCACTCAGGGTGTAGTGGTACTGCAGAAACATTATTTGGAAAATTTAGGTCAAGGAATGTTTCCTCTGTCTTTCATAGATTCAAGGAAGCAAAGTTTGTTGACATGGCCAAAAAAGGATATCACATTCTAAAGGATGAGTTAAATGGTAGTCCAAGTAAGAAAAACTATCTAGGGTTTGACCCTTCTTCCATCCCACGAGTTGAAAGAAGAGCAACAAACGACATCGCTATTATACCCACCAAACAATCTCGTTGGAGCAAAAAGTGGGAGGCTTTCAGAATGAAGATGCAAGGGAATAATCCTCTATTCAAGCGTATAGTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

199

Amino Acids

22.86

Weight (kDa)

10.22

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018818)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18772 FvH4_4g16331
rosa_laevigata	RLG00000032031 RLG00000032034
rosa_multiflora	Rmu_sc0002573.1_g000018
rosa_samantha	Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana	Rw5G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	84, 311
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	139, 352, 473, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	2 cut(s)	16, 232
AluI	AGCT	2 cut(s)	16, 232
Alw21I	GWGCWC	2 cut(s)	234, 273
AoxI	GGCC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	84, 311
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	169, 253
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	234, 273
BccI	CCATC	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	409, 459
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	377
BsiHKAI	GWGCWC	2 cut(s)	234, 273
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	234, 273
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	287
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	145
BspQI	GCTCTTC	2 cut(s)	222, 472
BsrI	ACTGG	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	2 cut(s)	222, 472
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	409, 459
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	409, 459
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	5 cut(s)	5, 16, 232, 377, 542
CviKI_1	RGCY	5 cut(s)	5, 16, 232, 377, 542
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	274
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	222, 472
EarI	CTCTTC	2 cut(s)	222, 472
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	1 cut(s)	376
FaiI	YATR	4 cut(s)	345, 374, 503, 587
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	372
FokI	GGATG	2 cut(s)	416, 446
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	118, 126, 178, 209, 348
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	169, 253
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	61, 548
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	59, 154, 462
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	293, 559
HpyF3I	CTNAG	1 cut(s)	274
Hsp92II	CATG	1 cut(s)	376
LguI	GCTCTTC	2 cut(s)	222, 472
LmnI	GCTCC	3 cut(s)	151, 268, 525
LpnPI	CCDG	6 cut(s)	53, 60, 127, 140, 184, 261
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	1 cut(s)	440
MboII	GAAGA	6 cut(s)	44, 127, 239, 447, 489, 565
MhlI	GDGCHC	2 cut(s)	234, 273
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	3 cut(s)	84, 185, 311
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	5 cut(s)	44, 157, 343, 532, 582
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	189, 410
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	115
NlaIII	CATG	1 cut(s)	376
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	2 cut(s)	222, 472
PfeI	GAWTC	4 cut(s)	118, 126, 178, 348
PfoI	TCCNGGA	1 cut(s)	113
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	2 cut(s)	222, 472
SaqAI	TTAA	2 cut(s)	189, 410
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	234, 273
SetI	ASST	5 cut(s)	18, 72, 159, 234, 320
SfaNI	GCATC	1 cut(s)	546
SfcI	CTRYAG	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	84, 185, 311
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	22, 88, 124, 212
TasI	AATT	3 cut(s)	84, 185, 311
TfiI	GAWTC	4 cut(s)	118, 126, 178, 348
Tru1I	TTAA	2 cut(s)	189, 410
Tru9I	TTAA	2 cut(s)	189, 410
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	332, 566
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	84, 311
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.