Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018818

Physical Location & Seq

Genomic Coordinates Reverse (-)

20320892 .. 20324469

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16331.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCCTCCGCCACCTCACCTCACACCTCCACCACCTCGACTTCACAGCACCTCCGCCACCTCGCTTCAAGAACTGGGTAGCACCTCGCCTCTCTCGCCGTTGACCTCGCCTCTCTCAGTCTCTCGATTCGGCACCTCGACTCGGCACTCAGCAGCACCTCGCACCTCCGCCACCTCACATCACACCTCCAACACCTCGACTTCACAGCACCTTCGCCACCTCGCTTCGAGAACTGGGCAGCACCTCGCCTCTCTCGCAGTCGACTCGGCAGCACCAAGGGCAGCGCCTCGACTCGACAGCGCCAAGGGCAGCTCCTCGACTCTCCAACGAATAAGCCATCGGCTCCGTTCGAGAAGCCTTTCGCCAAGCCTTGTTTCAGGCACCAAAATACGATTGCTTTTGGGAAATGGGTATTTAGGGAATCGTCGATACAGTGTCTTCAATGAGTTCTCGAAGCAAGTCAAGGAGGAAACTAATAACCTCAGTGCCATTTCTGTGGCTGCTCCGCAATTTAAAAAGACGGTCAAGGAGCTGAAGGAGCAAGTGGAAGAGCTCAAGGGGGTGAAAGAAGATCTCAAAGTTAGCCACAAAGTTTGCTTCTTCGAGGACATACTTGAAACTTATATCTTCGAATTGAATTGCAAAGAGAAAGGCATCATGGATCAAGGTTTTGAGCACCCAAGGCACTGTGCTCTCTTGGAACAGTCGCCAACAAGTTTGGAGTCTCCTTCAATGCAAATCTGTAGATGCCCATTAAGAATGGAAAACCCCGTCACGGAGGGCACTACATTCGGCAACTGGGACAGAGGAGCAACCCGGCCAACCTATGATCTGGAACTAACAATAAGGAGAACACCCTTACACCCTGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

292

Amino Acids

32.09

Weight (kDa)

9.48

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018818)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18772 FvH4_4g16331
rosa_laevigata	RLG00000032031 RLG00000032034
rosa_multiflora	Rmu_sc0002573.1_g000018
rosa_samantha	Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana	Rw5G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 380
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	4 cut(s)	8, 54, 168, 506
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	818
AcuI	CTGAAG	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	141, 775
AgsI	TTSAA	5 cut(s)	68, 442, 617, 637, 732
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AluBI	AGCT	3 cut(s)	312, 532, 553
AluI	AGCT	3 cut(s)	312, 532, 553
Alw21I	GWGCWC	3 cut(s)	555, 678, 694
Alw26I	GTCTC	2 cut(s)	124, 729
AlwI	GGATC	1 cut(s)	669
AoxI	GGCC	1 cut(s)	818
ApeKI	GCWGC	6 cut(s)	152, 238, 269, 281, 309, 500
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	2 cut(s)	286, 302
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	2 cut(s)	8, 574
AsuII	TTCGAA	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	785
BanI	GGYRCC	2 cut(s)	131, 380
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	3 cut(s)	555, 678, 694
BbvI	GCAGC	6 cut(s)	164, 250, 281, 293, 321, 487
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	4 cut(s)	246, 280, 772, 806
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	124, 729
BfmI	CTRYAG	1 cut(s)	742
BfoI	RGCGCY	2 cut(s)	287, 303
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	6 cut(s)	153, 239, 270, 282, 310, 501
BlsI	GCNGC	6 cut(s)	154, 240, 271, 283, 311, 502
Bme1390I	CCNGG	1 cut(s)	817
BmiI	GGNNCC	3 cut(s)	133, 344, 382
BmrFI	CCNGG	1 cut(s)	817
BmrI	ACTGGG	3 cut(s)	83, 243, 808
BmsI	GCATC	2 cut(s)	663, 737
BmuI	ACTGGG	3 cut(s)	83, 243, 808
BpiI	GAAGAC	1 cut(s)	430
Bpu14I	TTCGAA	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	817
BsaJI	CCNNGG	3 cut(s)	275, 303, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 775
Bse1I	ACTGG	3 cut(s)	78, 238, 803
BseDI	CCNNGG	3 cut(s)	275, 303, 680
BseLI	CCNNNNNNNGG	2 cut(s)	141, 775
BseMII	CTCAG	3 cut(s)	129, 162, 496
BseNI	ACTGG	3 cut(s)	78, 238, 803
BseRI	GAGGAG	2 cut(s)	304, 822
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	6 cut(s)	164, 250, 281, 293, 321, 487
BshFI	GGCC	1 cut(s)	820
BshNI	GGYRCC	2 cut(s)	131, 380
BsiHKAI	GWGCWC	3 cut(s)	555, 678, 694
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	2 cut(s)	141, 775
BsmAI	GTCTC	2 cut(s)	124, 729
BsmFI	GGGAC	1 cut(s)	815
BsnI	GGCC	1 cut(s)	820
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	4 cut(s)	555, 678, 694, 785
Bsp143I	GATC	3 cut(s)	571, 661, 829
BspACI	CCGC	4 cut(s)	8, 54, 168, 506
BspANI	GGCC	1 cut(s)	820
BspCNI	CTCAG	3 cut(s)	128, 161, 495
BspLI	GGNNCC	3 cut(s)	133, 344, 382
BspPI	GGATC	1 cut(s)	669
BspQI	GCTCTTC	1 cut(s)	543
BspT104I	TTCGAA	1 cut(s)	630
BspT107I	GGYRCC	2 cut(s)	131, 380
BsrI	ACTGG	3 cut(s)	78, 238, 803
BssECI	CCNNGG	3 cut(s)	275, 303, 680
BssMI	GATC	3 cut(s)	571, 661, 829
BssT1I	CCWWGG	3 cut(s)	275, 303, 680
Bst4CI	ACNGT	4 cut(s)	434, 523, 689, 705
Bst6I	CTCTTC	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	630
BstDEI	CTNAG	3 cut(s)	115, 148, 482
BstH2I	RGCGCY	2 cut(s)	287, 303
BstHHI	GCGC	2 cut(s)	286, 302
BstKTI	GATC	3 cut(s)	574, 664, 832
BstMAI	GTCTC	2 cut(s)	124, 729
BstMBI	GATC	3 cut(s)	571, 661, 829
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 254, 278, 306, 538, 682
BstSCI	CCNGG	1 cut(s)	815
BstSFI	CTRYAG	1 cut(s)	742
BstSLI	GKGCMC	1 cut(s)	785
BstV1I	GCAGC	6 cut(s)	164, 250, 281, 293, 321, 487
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	820
BtsIMutI	CAGTG	3 cut(s)	439, 490, 685
CfoI	GCGC	2 cut(s)	286, 302
CspCI	CAANNNNNGTGG	2 cut(s)	575, 610
CviAII	CATG	1 cut(s)	658
DdeI	CTNAG	3 cut(s)	115, 148, 482
DpnI	GATC	3 cut(s)	573, 663, 831
DpnII	GATC	3 cut(s)	571, 661, 829
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	818
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	2 cut(s)	43, 157
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	3 cut(s)	275, 303, 680
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	553
EcoT14I	CCWWGG	3 cut(s)	275, 303, 680
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	3 cut(s)	275, 303, 680
FaeI	CATG	1 cut(s)	661
FaiI	YATR	4 cut(s)	611, 624, 659, 828
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	6 cut(s)	153, 239, 270, 282, 310, 501
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	6 cut(s)	153, 239, 270, 282, 310, 501
GlaI	GCGC	2 cut(s)	285, 301
GluI	GCNGC	6 cut(s)	153, 239, 270, 282, 310, 501
HaeII	RGCGCY	2 cut(s)	287, 303
HaeIII	GGCC	1 cut(s)	820
HapII	CCGG	1 cut(s)	817
HhaI	GCGC	2 cut(s)	286, 302
Hin1II	CATG	1 cut(s)	661
Hin6I	GCGC	2 cut(s)	284, 300
HinP1I	GCGC	2 cut(s)	284, 300
HincII	GTYRAC	2 cut(s)	102, 262
HindII	GTYRAC	2 cut(s)	102, 262
HinfI	GANTC	7 cut(s)	126, 139, 263, 291, 319, 421, 722
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	2 cut(s)	8, 574
Hpy166II	GTNNAC	2 cut(s)	102, 262
Hpy188III	TCNNGA	6 cut(s)	68, 123, 228, 351, 451, 833
Hpy8I	GTNNAC	2 cut(s)	102, 262
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	221, 529, 738
HpyCH4III	ACNGT	4 cut(s)	434, 523, 689, 705
HpyCH4V	TGCA	2 cut(s)	642, 736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 254, 278, 306, 538, 682
HpyF3I	CTNAG	3 cut(s)	115, 148, 482
Hsp92II	CATG	1 cut(s)	661
HspAI	GCGC	2 cut(s)	284, 300
Kzo9I	GATC	3 cut(s)	571, 661, 829
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	6 cut(s)	317, 348, 508, 529, 538, 809
LpnPI	CCDG	6 cut(s)	59, 219, 363, 784, 818, 830
Lsp1109I	GCAGC	6 cut(s)	164, 250, 281, 293, 321, 487
LweI	GCATC	2 cut(s)	663, 737
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	3 cut(s)	573, 663, 831
MboI	GATC	3 cut(s)	571, 661, 829
MboII	GAAGA	5 cut(s)	430, 560, 581, 592, 619
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	4 cut(s)	555, 678, 694, 785
MluCI	AATT	3 cut(s)	509, 632, 637
MlyI	GAGTC	5 cut(s)	133, 257, 285, 313, 731
MmeI	TCCRAC	2 cut(s)	213, 349
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	2 cut(s)	513, 755
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	1 cut(s)	817
MwoI	GCNNNNNNNGC	6 cut(s)	94, 254, 278, 306, 538, 682
NciI	CCSGG	1 cut(s)	817
NdeII	GATC	3 cut(s)	571, 661, 829
NlaIII	CATG	1 cut(s)	661
NlaIV	GGNNCC	3 cut(s)	133, 344, 382
NmeAIII	GCCGAG	2 cut(s)	121, 245
NmuCI	GTSAC	1 cut(s)	772
NspV	TTCGAA	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	126, 421
PkrI	GCNGC	6 cut(s)	154, 240, 271, 283, 311, 502
PleI	GAGTC	5 cut(s)	133, 257, 285, 313, 730
PpsI	GAGTC	5 cut(s)	133, 257, 285, 313, 730
Psp124BI	GAGCTC	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	133, 344, 382
PsuI	RGATCY	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	555
SalI	GTCGAC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	513, 755
SatI	GCNGC	6 cut(s)	153, 239, 270, 282, 310, 501
Sau3AI	GATC	3 cut(s)	571, 661, 829
SchI	GAGTC	5 cut(s)	133, 257, 285, 313, 731
ScrFI	CCNGG	1 cut(s)	817
SduI	GDGCHC	4 cut(s)	555, 678, 694, 785
SfaNI	GCATC	2 cut(s)	663, 737
SfcI	CTRYAG	1 cut(s)	742
SfuI	TTCGAA	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	3 cut(s)	509, 632, 637
SsiI	CCGC	4 cut(s)	8, 54, 168, 506
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	815
StyI	CCWWGG	3 cut(s)	275, 303, 680
TaaI	ACNGT	4 cut(s)	434, 523, 689, 705
TasI	AATT	3 cut(s)	509, 632, 637
TfiI	GAWTC	2 cut(s)	126, 421
Tru1I	TTAA	2 cut(s)	513, 755
Tru9I	TTAA	2 cut(s)	513, 755
TscAI	CASTG	3 cut(s)	439, 490, 692
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	6 cut(s)	152, 238, 269, 281, 309, 500
Tsp45I	GTSAC	1 cut(s)	772
TspGWI	ACGGA	2 cut(s)	335, 791
TspRI	CASTG	3 cut(s)	439, 490, 692
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.