Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018818

Physical Location & Seq

Genomic Coordinates Forward (+)

9686047 .. 9692761

Gene Structure 6715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG105800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTGGTAGAAAGCTTGTTCGAGATTTGTTCCTCCACAGACGATCCCTTCTTCAGTCTCAACAACAGGTTTCAGGCACGAAAATTCGATTGCTTTCGGAAAATGGGTATTCCGGGAATCGTCGATTCAGTGTCTTCAATGAATTTTCGGAGCAGGTGAAGGAGGAAACCAGTAAGAATCCACCATTTAAAAAGACAGTCAAGGAGTCGAAAGAGCAAGTGGAAGAGCTCAAGGGGGTGAAAGAAGATCTGAAAGTTAGAACGAAGCAGACAACGGAGCACTCAGGGTGTAGTGATACTGCAGAAACATTATTTGGAAAATTTAGGTCTAGGAATGTTTCCTCTGTCTTTCATAGATTCAAGGAAGCAAAGTTTGTTGACATGGCCAAAAAAGGATATCACATTCTAAAGGATGAGTTAAATGGTAGTCCAAGACTCCAACTTTTTGGTCTAATGCCTCCTGATCAAGGTAGAATATATGCCCCAGATGAGCTTTCGTCTTCTTTGTCATTTAGGTTCTTTGCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

176

Amino Acids

20.25

Weight (kDa)

9.79

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018818)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18772 FvH4_4g16331
rosa_laevigata	RLG00000032031 RLG00000032034
rosa_multiflora	Rmu_sc0002573.1_g000018
rosa_samantha	Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana	Rw5G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	529
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AclWI	GGATC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	3 cut(s)	84, 143, 320
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	139, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	16, 229, 493
AluI	AGCT	3 cut(s)	16, 229, 493
Alw21I	GWGCWC	2 cut(s)	231, 282
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	384
ApoI	RAATTY	3 cut(s)	84, 143, 320
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	169, 250
BalI	TGGCCA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	127, 492
Bbv12I	GWGCWC	2 cut(s)	231, 282
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	127, 492
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	231, 282
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	231, 282
Bsp143I	GATC	3 cut(s)	44, 247, 463
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	296
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	44, 247, 463
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	3 cut(s)	47, 250, 466
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	44, 247, 463
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	300
BstV2I	GAAGAC	2 cut(s)	127, 492
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	5 cut(s)	5, 16, 229, 386, 493
CviKI_1	RGCY	5 cut(s)	5, 16, 229, 386, 493
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	3 cut(s)	46, 249, 465
DpnII	GATC	3 cut(s)	44, 247, 463
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	1 cut(s)	385
FaiI	YATR	5 cut(s)	354, 383, 478, 480, 529
FatI	CATG	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	463
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	6 cut(s)	118, 126, 178, 206, 357, 435
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	169, 250
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	100, 151, 252
Hpy188III	TCNNGA	2 cut(s)	23, 461
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	59, 154
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	302, 524
HpyF3I	CTNAG	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	3 cut(s)	44, 247, 463
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	151, 277
LpnPI	CCDG	8 cut(s)	53, 60, 127, 140, 184, 270, 474, 498
MaeI	CTAG	1 cut(s)	330
MalI	GATC	3 cut(s)	46, 249, 465
MboI	GATC	3 cut(s)	44, 247, 463
MboII	GAAGA	5 cut(s)	44, 127, 236, 257, 492
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	231, 282
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	3 cut(s)	84, 143, 320
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	215, 429
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	4 cut(s)	44, 157, 352, 468
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	2 cut(s)	189, 419
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	44, 247, 463
NlaIII	CATG	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	219
PfeI	GAWTC	4 cut(s)	118, 126, 178, 357
PfoI	TCCNGGA	1 cut(s)	113
PleI	GAGTC	2 cut(s)	214, 429
PpsI	GAGTC	2 cut(s)	214, 429
PsiI	TTATAA	1 cut(s)	529
Psp124BI	GAGCTC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	189, 419
Sau3AI	GATC	3 cut(s)	44, 247, 463
SchI	GAGTC	2 cut(s)	215, 429
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	231, 282
SetI	ASST	8 cut(s)	18, 72, 159, 231, 329, 472, 495, 518
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	84, 143, 320
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	4 cut(s)	22, 88, 124, 209
TasI	AATT	3 cut(s)	84, 143, 320
TfiI	GAWTC	4 cut(s)	118, 126, 178, 357
Tru1I	TTAA	2 cut(s)	189, 419
Tru9I	TTAA	2 cut(s)	189, 419
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	156, 341
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	3 cut(s)	84, 143, 320
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.