Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018818

Physical Location & Seq

Genomic Coordinates Forward (+)

9899915 .. 9908168

Gene Structure 8254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGGTAGAAAGCTTGTTCGAGATTTGTTCCTCCACAGACGATCCCTTCTTCAGTCTCAACAACAGGTTTCAGGCACGAAAATTCGATTGCTTTCGGAAAATGGGTATTCCGGGAATCGTCGATTCAGTGTCTTCAATGAATTTTCGGAGCAGGTGAAGGAGGAAACCAGTAAGAATCCACCATTTAAAAAGACAGTCAAGGAGTCGAAAGAGCAAGTGGAAGAGCTCAAGGGGGTGAAAGAAGATCTGAAAGTTAGAACGAAGCAGACAACGGAGCACTCAGGGTGTAGTGATACTGCAGAAACATTATTTGGAAAATTTAGGTCTAGGAATGTTTCCTCTGTCTTTCATAGATTCAAGGAAGCAAAGTTTGTTGACATGGCCAAAAAAGGATATCACATTCTAAAGGATGAGTTAAATGGTAGGTTTGACCCTTCTTCCATCCCACGAGTTGAAAGAAGAGCAACAAGCGACATCGCGGTACAATCTCGTTGGAGCAAAAAGTGGGAGGCTTTCAGAATGAAGATGCAAGGGAATAATCCTCTATTCAAGCGAACTGATAGCCCAATAGTTCGCAAAATTCAGGATATCAATGAAGCTATTTTTCAAAAAAACCCCTTTCAAAAAAAAAATGAAGCTATTTTTCCAGAAACAAATGCTGCAGCATCAATTAAGGAAATCCATGCCCGAGATCCATCTTTCTCTTTACCAGATTTTGTGGTAGAGGTTCAGAATGTGGTCAAAACTGTGTTAAATGCTTACATGAAGGGATATATTAAAACACGGAACAAGTACTGTGTTGATGAGGTGATTGAGCGGTGTATAGCCGAGCGTCAGAATCCTGTTATCTCTGAGGTGGAAGTAACAGAAACCAAACTAATTGGAGACTCTCCCATAATCATTATAGGGTTCCAAACACAGCAAGTCTTTTGTGTACTTGATAAAAATGAGGATTCAAATTTGCTGACCACTAATACTTTGGACATGCAACCTTGGGATCCTGAAGAACTTCCTCAAGGCGCTCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

344

Amino Acids

39.63

Weight (kDa)

9.23

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim44	PF04280	222 - 318	1.5e-12	Tim44-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018818)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18772 FvH4_4g16331
rosa_laevigata	RLG00000032031 RLG00000032034
rosa_multiflora	Rmu_sc0002573.1_g000018
rosa_samantha	Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana	Rw5G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	820
AccII	CGCG	1 cut(s)	482
AciI	CCGC	2 cut(s)	482, 820
AclWI	GGATC	4 cut(s)	39, 689, 995, 1008
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	5 cut(s)	84, 143, 320, 582, 961
AcuI	CTGAAG	2 cut(s)	38, 1026
AfaI	GTAC	3 cut(s)	486, 797, 939
AgsI	TTSAA	7 cut(s)	139, 361, 458, 553, 611, 626, 960
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	16, 229, 602, 641
AluI	AGCT	4 cut(s)	16, 229, 602, 641
Alw21I	GWGCWC	2 cut(s)	231, 282
Alw26I	GTCTC	2 cut(s)	63, 882
AlwI	GGATC	4 cut(s)	39, 689, 995, 1008
Ama87I	CYCGRG	1 cut(s)	690
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	662, 665
ApoI	RAATTY	5 cut(s)	84, 143, 320, 582, 961
Asp700I	GAANNNNTTC	1 cut(s)	1011
AspLEI	GCGC	1 cut(s)	1025
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	169, 250, 823
AvaI	CYCGRG	1 cut(s)	690
BalI	TGGCCA	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	1000
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	231, 282
BbvI	GCAGC	2 cut(s)	649, 677
BccI	CCATC	2 cut(s)	452, 706
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	63, 882
BfaI	CTAG	2 cut(s)	330, 1033
BfmI	CTRYAG	2 cut(s)	300, 663
BfoI	RGCGCY	1 cut(s)	1026
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	2 cut(s)	663, 666
BlsI	GCNGC	2 cut(s)	664, 667
BmcAI	AGTACT	1 cut(s)	797
Bme1390I	CCNGG	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	690
BmiI	GGNNCC	2 cut(s)	914, 1002
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	519, 677
BpiI	GAAGAC	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	215, 1002
BpuMI	CCSGG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	995
Bse1I	ACTGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	995
BseGI	GGATG	2 cut(s)	418, 444
BseMII	CTCAG	2 cut(s)	297, 846
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	649, 677
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	231, 282
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	63, 882
BsnI	GGCC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	690
Bsp1286I	GDGCHC	2 cut(s)	231, 282
Bsp143I	GATC	4 cut(s)	44, 247, 694, 1000
BspACI	CCGC	2 cut(s)	482, 820
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	2 cut(s)	296, 847
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	914, 1002
BspMAI	CTGCAG	2 cut(s)	304, 667
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	4 cut(s)	39, 689, 995, 1008
BspQI	GCTCTTC	2 cut(s)	219, 457
BsrBI	CCGCTC	1 cut(s)	820
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	995
BssMI	GATC	4 cut(s)	44, 247, 694, 1000
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	995
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	199, 751, 800
Bst6I	CTCTTC	2 cut(s)	219, 457
BstDEI	CTNAG	2 cut(s)	283, 855
BstF5I	GGATG	2 cut(s)	418, 444
BstFNI	CGCG	1 cut(s)	482
BstH2I	RGCGCY	1 cut(s)	1026
BstHHI	GCGC	1 cut(s)	1025
BstKTI	GATC	4 cut(s)	47, 250, 697, 1003
BstMAI	GTCTC	2 cut(s)	63, 882
BstMBI	GATC	4 cut(s)	44, 247, 694, 1000
BstNSI	RCATGY	1 cut(s)	991
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	2 cut(s)	300, 663
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	649, 677
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	3 cut(s)	247, 694, 1000
BstYI	RGATCY	3 cut(s)	247, 694, 1000
BsuRI	GGCC	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	418, 444
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	1025
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	3 cut(s)	485, 796, 938
CviAII	CATG	4 cut(s)	382, 686, 766, 988
CviJI	RGCY	9 cut(s)	5, 16, 229, 386, 515, 567, 602, 641, 830
CviKI_1	RGCY	9 cut(s)	5, 16, 229, 386, 515, 567, 602, 641, 830
CviQI	GTAC	3 cut(s)	485, 796, 938
DdeI	CTNAG	2 cut(s)	283, 855
DpnI	GATC	4 cut(s)	46, 249, 696, 1002
DpnII	GATC	4 cut(s)	44, 247, 694, 1000
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	219, 457
EarI	CTCTTC	2 cut(s)	219, 457
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	2 cut(s)	398, 592
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	38, 1026
Eco88I	CYCGRG	1 cut(s)	690
EcoICRI	GAGCTC	1 cut(s)	229
EcoRV	GATATC	2 cut(s)	398, 592
EcoT14I	CCWWGG	1 cut(s)	995
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	995
FaeI	CATG	4 cut(s)	385, 689, 769, 991
FaiI	YATR	9 cut(s)	354, 383, 687, 767, 777, 827, 899, 908, 989
FalI	AAGNNNNNCTT	1 cut(s)	1011
FatI	CATG	4 cut(s)	381, 685, 765, 987
Fnu4HI	GCNGC	2 cut(s)	663, 666
FokI	GGATG	2 cut(s)	425, 431
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	663, 666
FspBI	CTAG	2 cut(s)	330, 1033
GlaI	GCGC	1 cut(s)	1024
GluI	GCNGC	2 cut(s)	663, 666
HaeII	RGCGCY	1 cut(s)	1026
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	824
HhaI	GCGC	1 cut(s)	1025
Hin1II	CATG	4 cut(s)	385, 689, 769, 991
Hin6I	GCGC	1 cut(s)	1023
HinP1I	GCGC	1 cut(s)	1023
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	8 cut(s)	118, 126, 178, 206, 357, 841, 890, 956
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	3 cut(s)	169, 250, 823
Hpy166II	GTNNAC	2 cut(s)	379, 938
Hpy188I	TCNGA	7 cut(s)	100, 151, 252, 521, 735, 840, 856
Hpy188III	TCNNGA	4 cut(s)	23, 587, 650, 1004
Hpy8I	GTNNAC	2 cut(s)	379, 938
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	4 cut(s)	59, 154, 447, 763
HpyCH4III	ACNGT	3 cut(s)	199, 751, 800
HpyCH4V	TGCA	4 cut(s)	302, 532, 665, 991
HpyF3I	CTNAG	2 cut(s)	283, 855
Hsp92II	CATG	4 cut(s)	385, 689, 769, 991
HspAI	GCGC	1 cut(s)	1023
Kzo9I	GATC	4 cut(s)	44, 247, 694, 1000
LguI	GCTCTTC	2 cut(s)	219, 457
LmnI	GCTCC	3 cut(s)	151, 277, 498
Lsp1109I	GCAGC	2 cut(s)	649, 677
LweI	GCATC	2 cut(s)	519, 677
MaeI	CTAG	2 cut(s)	330, 1033
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	4 cut(s)	46, 249, 696, 1002
MbiI	CCGCTC	1 cut(s)	820
MboI	GATC	4 cut(s)	44, 247, 694, 1000
MboII	GAAGA	8 cut(s)	44, 127, 236, 257, 432, 474, 538, 1019
MflI	RGATCY	3 cut(s)	247, 694, 1000
MhlI	GDGCHC	2 cut(s)	231, 282
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	7 cut(s)	84, 143, 320, 582, 672, 882, 961
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	215, 884
MmeI	TCCRAC	1 cut(s)	476
Mox20I	TGGCCA	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	1011
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	5 cut(s)	189, 419, 675, 755, 780
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	482
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	4 cut(s)	44, 247, 694, 1000
NlaIII	CATG	4 cut(s)	385, 689, 769, 991
NlaIV	GGNNCC	2 cut(s)	914, 1002
NmeAIII	GCCGAG	1 cut(s)	856
NspI	RCATGY	1 cut(s)	991
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	2 cut(s)	219, 457
PdmI	GAANNNNTTC	1 cut(s)	1011
PfeI	GAWTC	6 cut(s)	118, 126, 178, 357, 841, 956
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	664, 667
PleI	GAGTC	2 cut(s)	214, 884
PpsI	GAGTC	2 cut(s)	214, 884
Psp124BI	GAGCTC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	914, 1002
PstI	CTGCAG	2 cut(s)	304, 667
PsuI	RGATCY	3 cut(s)	247, 694, 1000
RsaI	GTAC	3 cut(s)	486, 797, 939
RsaNI	GTAC	3 cut(s)	485, 796, 938
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	2 cut(s)	219, 457
SaqAI	TTAA	5 cut(s)	189, 419, 675, 755, 780
SatI	GCNGC	2 cut(s)	663, 666
Sau3AI	GATC	4 cut(s)	44, 247, 694, 1000
ScaI	AGTACT	1 cut(s)	797
SchI	GAGTC	2 cut(s)	215, 884
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	231, 282
SfaNI	GCATC	2 cut(s)	519, 677
SfcI	CTRYAG	2 cut(s)	300, 663
SmlI	CTYRAG	2 cut(s)	230, 1017
SmoI	CTYRAG	2 cut(s)	230, 1017
Sse9I	AATT	7 cut(s)	84, 143, 320, 582, 672, 882, 961
SsiI	CCGC	2 cut(s)	482, 820
SspMI	CTAG	2 cut(s)	330, 1033
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	995
TaaI	ACNGT	3 cut(s)	199, 751, 800
TaqI	TCGA	4 cut(s)	22, 88, 124, 209
TasI	AATT	7 cut(s)	84, 143, 320, 582, 672, 882, 961
TatI	WGTACW	2 cut(s)	795, 937
TfiI	GAWTC	6 cut(s)	118, 126, 178, 357, 841, 956
Tru1I	TTAA	5 cut(s)	189, 419, 675, 755, 780
Tru9I	TTAA	5 cut(s)	189, 419, 675, 755, 780
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	2 cut(s)	662, 665
TspDTI	ATGAA	6 cut(s)	156, 341, 539, 612, 651, 782
TspGWI	ACGGA	2 cut(s)	290, 802
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	5 cut(s)	84, 143, 320, 582, 961
XceI	RCATGY	1 cut(s)	991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	979
XmnI	GAANNNNTTC	1 cut(s)	1011
XspI	CTAG	2 cut(s)	330, 1033
ZrmI	AGTACT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.