Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018818

Physical Location & Seq

Genomic Coordinates Forward (+)

9306574 .. 9306768

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG102200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCTGGTAGAAAGCTTGTTCGAGATTTGTTCCTCCATACACAATCCCTTCTTCAGTCTCAACAACCGGTTTCAGGCACGAAAATTCGATTGCTTTCGGAAAATGGGTATTCCGGGAATCGTCGATTGACTCGATTCAGTGTCTTCAATGAGTTTTCAAAGCGGGTCAAGGAGGAAACCAGTAAGAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

64

Amino Acids

7.38

Weight (kDa)

10.96

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0018818)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18772 FvH4_4g16331
rosa_laevigata	RLG00000032031 RLG00000032034
rosa_multiflora	Rmu_sc0002573.1_g000018
rosa_samantha	Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana	Rw5G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	148, 159
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	84
AsiGI	ACCGGT	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	180
BshTI	ACCGGT	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	68, 114
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	67
CviJI	RGCY	2 cut(s)	5, 16
CviKI_1	RGCY	2 cut(s)	5, 16
Eco57I	CTGAAG	1 cut(s)	38
FaiI	YATR	2 cut(s)	39, 193
FauI	CCCGC	1 cut(s)	156
HapII	CCGG	2 cut(s)	68, 114
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	4 cut(s)	118, 130, 135, 187
HpaII	CCGG	2 cut(s)	68, 114
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	60, 81, 127
MboII	GAAGA	2 cut(s)	44, 136
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	44, 166
MspI	CCGG	2 cut(s)	68, 114
MspR9I	CCNGG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	118, 135, 187
PfoI	TCCNGGA	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	67
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	1 cut(s)	18
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	113
TaqI	TCGA	4 cut(s)	22, 88, 124, 133
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	118, 135, 187
TscAI	CASTG	1 cut(s)	145
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.