Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0018818

Physical Location & Seq

Genomic Coordinates Forward (+)

10338966 .. 10339637

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTGGTAGAAAGCTTGTTCGAGATTTGTTCCTCCACACACAATCCCTTCTTCAGTCTCAACAACAGGTTTCAGGCACGAAAATTCGATTGCTTTCGGAAAATGGGTATTCCGGGAATCGTCGATTCAGTGTCTTCAATGAGTTTTCGGAGCAGGTGAAGGAGGAAACCAGTAAGAATCCACCATTTAAAAAGACAGTCAAGGAGTCGAAAGAGCAAGTGGAAGAGCTCAAGGGGGTGAAAGAAGATCTGAAAGTTAGAACGAAGCAGACAGCGGAGCACTCAGGGTGTAGTGATACTGCAGAAACATTATTTGGAAAATTTAGGTCAAGGAATGTTTCCTCTGTCTTTCATAGATTCAAGGAAGCAAAGTTTGTTGACATGGCCGAAAAAGGATATCACGTTCTAAAGGATGAGTTAAATGGTAGTCCAAGTAAGAAAAAGTATCTAGGGTTTTACCCTTCTTCCATCCCACGAGTTGAAAGAAGAGCAACAAGCGACATCGCTGTTGTACCCACCAAACAATCTCGTTGGAGCAAAAAGTGGGAGGCTTTCAGAATGAAGATGCAAGGGAATAATCCTCTATTCAAGCGTATCAGTGGGATAAGCGAACCTGTTGAAATAAAAAGCGAGGAGATCATTGATGACATGAAGGAACTGATAGCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005759 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0033036 GO:0033220 GO:0033365 GO:0034613 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim44

Protein Analysis

224

Amino Acids

25.65

Weight (kDa)

9.68

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018818)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18772 FvH4_4g16331
rosa_laevigata	RLG00000032031 RLG00000032034
rosa_multiflora	Rmu_sc0002573.1_g000018
rosa_samantha	Rh5AG105800 Rh5BG102200 Rh5DG100600
rosa_wichuraiana	Rw5G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AciI	CCGC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	84, 320
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	513
AgsI	TTSAA	5 cut(s)	139, 361, 482, 589, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	16, 229
AluI	AGCT	2 cut(s)	16, 229
Alw21I	GWGCWC	2 cut(s)	231, 282
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	384
ApoI	RAATTY	2 cut(s)	84, 320
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	169, 250
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	231, 282
BccI	CCATC	1 cut(s)	476
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	418, 468
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	647
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	231, 282
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	231, 282
Bsp143I	GATC	2 cut(s)	247, 636
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	296
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	145
BspQI	GCTCTTC	2 cut(s)	219, 481
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	247, 636
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	219, 481
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	418, 468
BstKTI	GATC	2 cut(s)	250, 639
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	247, 636
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	418, 468
BtsIMutI	CAGTG	2 cut(s)	136, 604
BveI	ACCTGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	2 cut(s)	382, 649
CviJI	RGCY	6 cut(s)	5, 16, 229, 386, 551, 665
CviKI_1	RGCY	6 cut(s)	5, 16, 229, 386, 551, 665
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	2 cut(s)	249, 638
DpnII	GATC	2 cut(s)	247, 636
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	219, 481
EarI	CTCTTC	2 cut(s)	219, 481
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	385, 652
FaiI	YATR	3 cut(s)	354, 383, 650
FatI	CATG	2 cut(s)	381, 648
FokI	GGATG	2 cut(s)	425, 455
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	449
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	2 cut(s)	385, 652
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	118, 126, 178, 206, 357
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	169, 250
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	100, 151, 252, 557
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	4 cut(s)	59, 154, 471, 646
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	302, 568
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	385, 652
Kzo9I	GATC	2 cut(s)	247, 636
LguI	GCTCTTC	2 cut(s)	219, 481
LmnI	GCTCC	3 cut(s)	151, 277, 534
LpnPI	CCDG	7 cut(s)	53, 60, 127, 140, 184, 270, 627
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	402
MalI	GATC	2 cut(s)	249, 638
MboI	GATC	2 cut(s)	247, 636
MboII	GAAGA	7 cut(s)	44, 127, 236, 257, 456, 498, 574
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	231, 282
MluCI	AATT	2 cut(s)	84, 320
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	6 cut(s)	44, 157, 352, 541, 591, 625
MseI	TTAA	2 cut(s)	189, 419
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	247, 636
NlaIII	CATG	2 cut(s)	385, 652
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	2 cut(s)	219, 481
PfeI	GAWTC	4 cut(s)	118, 126, 178, 357
PfoI	TCCNGGA	1 cut(s)	113
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	2 cut(s)	219, 481
SaqAI	TTAA	2 cut(s)	189, 419
Sau3AI	GATC	2 cut(s)	247, 636
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	231, 282
SetI	ASST	7 cut(s)	18, 72, 159, 231, 329, 405, 616
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	84, 320
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	4 cut(s)	22, 88, 124, 209
TasI	AATT	2 cut(s)	84, 320
TfiI	GAWTC	4 cut(s)	118, 126, 178, 357
Tru1I	TTAA	2 cut(s)	189, 419
Tru9I	TTAA	2 cut(s)	189, 419
TscAI	CASTG	2 cut(s)	136, 604
TspDTI	ATGAA	3 cut(s)	341, 575, 665
TspRI	CASTG	2 cut(s)	136, 604
XapI	RAATTY	2 cut(s)	84, 320
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.