Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Forward (+)

13256197 .. 13257659

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAAAATCCGATCAGAAACAGAAGCAGCACCATGAGCAACATATATTGTTACCTCAACAACAACAGCAACAACAACAACAACAAAAACAAGACTACTCTGATCATGGCTGTCGCGACCGAGCTCCGGGTAAGACTCAGCACCGACGCAAGGTACAAGCTCCGGTTATTAGAGAAGTAGACGAGGAGGTAAAGTTAGCTGCCACCGCGATCAGCCTCAACGTACGGTTGAGATCATCGTCCAACATGCCGCACCACATGCAAGAACGCGCTCTCCGCCGCACGAGATCACTCATTGACTCAGCCGCCGCCGCAGCCAAAGCACTGTCCTCCAAACCACGGCCAAACCCAACTCATATAGCTCGAGCTCTCAAAAAGGAGTTTGACTCGTTGTACGGACCGGCGTGGCACTGCGTGGTGGGGAAGAGTTTCGGGTCGTTCGTGACTCACTCGCCGGGGGGATTCCTCTACTTTTCCATCGACGAATCGCTGTCGGTGCTGCTCTTCAAGACGGAGGTTCAGGTGGTCACCGAACAACAACCACAGAAACCGGCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

187

Amino Acids

21.11

Weight (kDa)

9.76

Isoelectric Point (pI)

64.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	80 - 171	8.4e-26	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	3 cut(s)	117, 209, 270
AciI	CCGC	7 cut(s)	207, 251, 277, 280, 306, 309, 312
AcoI	YGGCCR	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	3 cut(s)	156, 225, 395
AfiI	CCNNNNNNNGG	3 cut(s)	127, 151, 339
AgsI	TTSAA	1 cut(s)	508
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	5 cut(s)	125, 161, 200, 362, 368
AluI	AGCT	5 cut(s)	125, 161, 200, 362, 368
Alw21I	GWGCWC	2 cut(s)	127, 370
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	4 cut(s)	28, 200, 314, 499
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	129, 456
AsuHPI	GGTGA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	127, 370
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	127, 370
BbvI	GCAGC	4 cut(s)	40, 187, 326, 486
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	129, 456
BisI	GCNGC	9 cut(s)	29, 201, 251, 280, 306, 309, 312, 315, 500
BlsI	GCNGC	9 cut(s)	30, 202, 252, 281, 307, 310, 313, 316, 501
Bme1390I	CCNGG	2 cut(s)	129, 456
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	129, 456
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpuMI	CCSGG	2 cut(s)	129, 456
BsaJI	CCNNGG	2 cut(s)	338, 455
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 151, 339
Bse118I	RCCGGY	2 cut(s)	400, 550
BseDI	CCNNGG	2 cut(s)	338, 455
BseLI	CCNNNNNNNGG	3 cut(s)	127, 151, 339
BseMII	CTCAG	2 cut(s)	152, 315
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	40, 187, 326, 486
Bsh1236I	CGCG	3 cut(s)	117, 209, 270
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	127, 370
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	5 cut(s)	128, 164, 401, 455, 551
BsiWI	CGTACG	1 cut(s)	223
BslI	CCNNNNNNNGG	3 cut(s)	127, 151, 339
BsnI	GGCC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	127, 370
Bsp143I	GATC	5 cut(s)	13, 103, 210, 233, 287
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	7 cut(s)	207, 251, 277, 280, 306, 309, 312
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	151, 314
BspFNI	CGCG	3 cut(s)	117, 209, 270
BspQI	GCTCTTC	1 cut(s)	509
BsrFI	RCCGGY	2 cut(s)	400, 550
BssAI	RCCGGY	2 cut(s)	400, 550
BssECI	CCNNGG	2 cut(s)	338, 455
BssMI	GATC	5 cut(s)	13, 103, 210, 233, 287
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	228, 327
Bst6I	CTCTTC	2 cut(s)	419, 509
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	138, 301
BstDSI	CCRYGG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	526
BstFNI	CGCG	3 cut(s)	117, 209, 270
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	5 cut(s)	16, 106, 213, 236, 290
BstMBI	GATC	5 cut(s)	13, 103, 210, 233, 287
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	8 cut(s)	37, 206, 259, 276, 311, 314, 320, 496
BstNSI	RCATGY	2 cut(s)	250, 262
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	127, 454
BstUI	CGCG	3 cut(s)	117, 209, 270
BstV1I	GCAGC	4 cut(s)	40, 187, 326, 486
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	323, 409
BtuMI	TCGCGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	2 cut(s)	400, 550
Cfr13I	GGNCC	1 cut(s)	398
CpoI	CGGWCCG	1 cut(s)	398
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	155, 224, 394
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	4 cut(s)	35, 107, 247, 259
CviQI	GTAC	3 cut(s)	155, 224, 394
DdeI	CTNAG	2 cut(s)	138, 301
DpnI	GATC	5 cut(s)	15, 105, 212, 235, 289
DpnII	GATC	5 cut(s)	13, 103, 210, 233, 287
DraIII	CACNNNGTG	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	419, 509
EarI	CTCTTC	2 cut(s)	419, 509
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	2 cut(s)	125, 368
Eco24I	GRGCYC	2 cut(s)	127, 370
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	2 cut(s)	125, 368
Eco88I	CYCGRG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	526
EcoICRI	GAGCTC	2 cut(s)	125, 368
EcoO65I	GGTNACC	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	127, 370
FaeI	CATG	4 cut(s)	38, 110, 250, 262
FaiI	YATR	8 cut(s)	36, 45, 47, 108, 248, 260, 357, 359
FatI	CATG	4 cut(s)	34, 106, 246, 258
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	9 cut(s)	29, 201, 251, 280, 306, 309, 312, 315, 500
FriOI	GRGCYC	2 cut(s)	127, 370
Fsp4HI	GCNGC	9 cut(s)	29, 201, 251, 280, 306, 309, 312, 315, 500
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	9 cut(s)	29, 201, 251, 280, 306, 309, 312, 315, 500
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	5 cut(s)	128, 164, 401, 455, 551
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	38, 110, 250, 262
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	6 cut(s)	136, 299, 386, 445, 462, 485
HpaII	CCGG	5 cut(s)	128, 164, 401, 455, 551
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	13, 18, 103
Hpy188III	TCNNGA	3 cut(s)	116, 442, 508
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	150, 485
HpyCH4III	ACNGT	2 cut(s)	228, 327
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	8 cut(s)	37, 206, 259, 276, 311, 314, 320, 496
HpyF3I	CTNAG	2 cut(s)	138, 301
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	38, 110, 250, 262
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	13, 103, 210, 233, 287
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	2 cut(s)	130, 166
LpnPI	CCDG	5 cut(s)	141, 177, 414, 468, 506
Lsp1109I	GCAGC	4 cut(s)	40, 187, 326, 486
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	51, 442, 526
MalI	GATC	5 cut(s)	15, 105, 212, 235, 289
MboI	GATC	5 cut(s)	13, 103, 210, 233, 287
MboII	GAAGA	2 cut(s)	436, 496
MhlI	GDGCHC	2 cut(s)	127, 370
MluCI	AATT	1 cut(s)	556
MlyI	GAGTC	4 cut(s)	130, 293, 380, 439
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	7 cut(s)	66, 178, 181, 227, 340, 476, 508
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	1 cut(s)	559
MspI	CCGG	5 cut(s)	128, 164, 401, 455, 551
MspR9I	CCNGG	2 cut(s)	129, 456
MvnI	CGCG	3 cut(s)	117, 209, 270
MwoI	GCNNNNNNNGC	8 cut(s)	37, 206, 259, 276, 311, 314, 320, 496
NciI	CCSGG	2 cut(s)	129, 456
NdeII	GATC	5 cut(s)	13, 103, 210, 233, 287
NlaIII	CATG	4 cut(s)	38, 110, 250, 262
NmuCI	GTSAC	2 cut(s)	442, 526
NruI	TCGCGA	1 cut(s)	117
NspI	RCATGY	2 cut(s)	250, 262
PaeR7I	CTCGAG	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	462, 485
Pfl23II	CGTACG	1 cut(s)	223
PkrI	GCNGC	9 cut(s)	30, 202, 252, 281, 307, 310, 313, 316, 501
PleI	GAGTC	4 cut(s)	130, 293, 380, 439
PpsI	GAGTC	4 cut(s)	130, 293, 380, 439
Psp124BI	GAGCTC	2 cut(s)	127, 370
PspEI	GGTNACC	1 cut(s)	526
PspLI	CGTACG	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	398
PspXI	VCTCGAGB	1 cut(s)	363
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	3 cut(s)	156, 225, 395
RsaNI	GTAC	3 cut(s)	155, 224, 394
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SacI	GAGCTC	2 cut(s)	127, 370
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	559
SatI	GCNGC	9 cut(s)	29, 201, 251, 280, 306, 309, 312, 315, 500
Sau3AI	GATC	5 cut(s)	13, 103, 210, 233, 287
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	4 cut(s)	130, 293, 380, 439
ScrFI	CCNGG	2 cut(s)	129, 456
SduI	GDGCHC	2 cut(s)	127, 370
Sfr274I	CTCGAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	7 cut(s)	207, 251, 277, 280, 306, 309, 312
SstI	GAGCTC	2 cut(s)	127, 370
StyD4I	CCNGG	2 cut(s)	127, 454
TaaI	ACNGT	2 cut(s)	228, 327
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	364, 480
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	556
TauI	GCSGC	5 cut(s)	253, 282, 308, 311, 314
TfiI	GAWTC	2 cut(s)	462, 485
Tru1I	TTAA	1 cut(s)	559
Tru9I	TTAA	1 cut(s)	559
TscAI	CASTG	2 cut(s)	330, 416
TseFI	GTSAC	2 cut(s)	442, 526
TseI	GCWGC	4 cut(s)	28, 200, 314, 499
Tsp45I	GTSAC	2 cut(s)	442, 526
TspGWI	ACGGA	2 cut(s)	411, 527
TspRI	CASTG	2 cut(s)	330, 416
VpaK11BI	GGWCC	1 cut(s)	398
XceI	RCATGY	2 cut(s)	250, 262
XhoI	CTCGAG	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.