Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Forward (+)

28077552 .. 28078621

Gene Structure 1070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG235600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAAAATCCGATCAAAAACAGAAGCAGCGCCACGAGCAAAACATATTGTTACCTCAACAACAACAACAACAACATAAGCAAGGCTACTCCGATCATGTCTATCGAGATCGAGTTCAGGCTCAACCTCAGAGCAAAGTACAAGCAGGTCTAATTAGAGAAGTAGACCAGGAGGTGAAGTTAGCTGCCACCGCGATCAGCCTCAACGTACGGTTGAGATCATCGTCCCACATGCCGCACCACATGCAAGACCGTGCTCTCCGCCGCACCAGATCACTCATCGACTCAGCCGCCGCCGCAGCAAAAGCAATTTCCTCCAAACCACGGCCAAACCCAACTCACATTGCTCGAGCTCTCAAAAAGGAGTTTGACTCGTTGTACGGACCGGCGTGGCACTGCGTGGTGGGAAAGAGTTTCGGGTCGTTCGTGACTCACTCGCCGGGTGGTTTCCTCTATTTTTCTATCGACGACTCGCTGTCGGTGCTGCTCTTTAAGACGGAGGTTCAGTTGGTTGCCGAACAACAACCACGGAAACCGGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

181

Amino Acids

20.46

Weight (kDa)

9.95

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	75 - 166	1.5e-25	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	194
AciI	CCGC	7 cut(s)	192, 236, 262, 265, 291, 294, 297
AcoI	YGGCCR	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	3 cut(s)	141, 210, 380
AfiI	CCNNNNNNNGG	1 cut(s)	324
AhdI	GACNNNNNGTC	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	185, 353
AluI	AGCT	2 cut(s)	185, 353
Alw21I	GWGCWC	2 cut(s)	259, 355
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	28, 185, 299, 484
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	355
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	259, 355
BbvI	GCAGC	4 cut(s)	40, 172, 311, 471
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	9 cut(s)	29, 186, 236, 265, 291, 294, 297, 300, 485
BlsI	GCNGC	9 cut(s)	30, 187, 237, 266, 292, 295, 298, 301, 486
Bme1390I	CCNGG	2 cut(s)	170, 441
Bme18I	GGWCC	1 cut(s)	383
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	383
BmrFI	CCNGG	2 cut(s)	170, 441
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	323, 527
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse118I	RCCGGY	2 cut(s)	385, 535
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	323, 527
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	143, 300
BseXI	GCAGC	4 cut(s)	40, 172, 311, 471
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	259, 355
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	386, 440, 536
BsiWI	CGTACG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	259, 355
Bsp143I	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
BspACI	CCGC	7 cut(s)	192, 236, 262, 265, 291, 294, 297
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	142, 299
BspFNI	CGCG	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	2 cut(s)	385, 535
BssAI	RCCGGY	2 cut(s)	385, 535
BssECI	CCNNGG	2 cut(s)	323, 527
BssMI	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	213, 254
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	129, 286
BstDSI	CCRYGG	2 cut(s)	323, 527
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	6 cut(s)	16, 97, 112, 198, 221, 275
BstMBI	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 191, 244, 296, 299, 305, 481
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	2 cut(s)	235, 247
BstSCI	CCNGG	2 cut(s)	168, 439
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	40, 172, 311, 471
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	2 cut(s)	323, 527
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	385, 535
Cfr13I	GGNCC	1 cut(s)	383
CpoI	CGGWCCG	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	140, 209, 379
CspI	CGGWCCG	1 cut(s)	383
CviAII	CATG	3 cut(s)	98, 232, 244
CviJI	RGCY	7 cut(s)	87, 122, 185, 201, 290, 328, 353
CviKI_1	RGCY	7 cut(s)	87, 122, 185, 201, 290, 328, 353
CviQI	GTAC	3 cut(s)	140, 209, 379
DdeI	CTNAG	2 cut(s)	129, 286
DpnI	GATC	6 cut(s)	15, 96, 111, 197, 220, 274
DpnII	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
DraIII	CACNNNGTG	1 cut(s)	400
DriI	GACNNNNNGTC	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	326
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EciI	GGCGGA	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	355
FaeI	CATG	3 cut(s)	101, 235, 247
FaiI	YATR	5 cut(s)	47, 78, 99, 233, 245
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	97, 231, 243
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	9 cut(s)	29, 186, 236, 265, 291, 294, 297, 300, 485
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	9 cut(s)	29, 186, 236, 265, 291, 294, 297, 300, 485
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	9 cut(s)	29, 186, 236, 265, 291, 294, 297, 300, 485
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	3 cut(s)	386, 440, 536
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	101, 235, 247
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	284, 371, 430, 470
HpaII	CCGG	3 cut(s)	386, 440, 536
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	13, 94, 132
Hpy188III	TCNNGA	2 cut(s)	107, 427
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	470
HpyCH4III	ACNGT	2 cut(s)	213, 254
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 191, 244, 296, 299, 305, 481
HpyF3I	CTNAG	2 cut(s)	129, 286
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	101, 235, 247
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
LpnPI	CCDG	7 cut(s)	104, 132, 155, 182, 283, 399, 453
Lsp1109I	GCAGC	4 cut(s)	40, 172, 311, 471
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	51, 427
MalI	GATC	6 cut(s)	15, 96, 111, 197, 220, 274
MboI	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
MhlI	GDGCHC	2 cut(s)	259, 355
MluCI	AATT	3 cut(s)	153, 309, 541
MlyI	GAGTC	4 cut(s)	278, 365, 424, 464
MnlI	CCTC	7 cut(s)	66, 138, 166, 212, 325, 461, 493
MseI	TTAA	1 cut(s)	492
MspI	CCGG	3 cut(s)	386, 440, 536
MspR9I	CCNGG	2 cut(s)	170, 441
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	7 cut(s)	37, 191, 244, 296, 299, 305, 481
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
NlaIII	CATG	3 cut(s)	101, 235, 247
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	2 cut(s)	235, 247
PaeR7I	CTCGAG	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
Pfl23II	CGTACG	1 cut(s)	208
PkrI	GCNGC	9 cut(s)	30, 187, 237, 266, 292, 295, 298, 301, 486
PleI	GAGTC	4 cut(s)	278, 365, 424, 464
PpsI	GAGTC	4 cut(s)	278, 365, 424, 464
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspLI	CGTACG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	383
PspXI	VCTCGAGB	1 cut(s)	348
RsaI	GTAC	3 cut(s)	141, 210, 380
RsaNI	GTAC	3 cut(s)	140, 209, 379
Rsr2I	CGGWCCG	1 cut(s)	383
RsrII	CGGWCCG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	9 cut(s)	29, 186, 236, 265, 291, 294, 297, 300, 485
Sau3AI	GATC	6 cut(s)	13, 94, 109, 195, 218, 272
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	4 cut(s)	278, 365, 424, 464
ScrFI	CCNGG	2 cut(s)	170, 441
SduI	GDGCHC	2 cut(s)	259, 355
SetI	ASST	8 cut(s)	58, 130, 151, 177, 187, 210, 355, 504
Sfr274I	CTCGAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	153, 309, 541
SsiI	CCGC	7 cut(s)	192, 236, 262, 265, 291, 294, 297
SstI	GAGCTC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	168, 439
TaaI	ACNGT	2 cut(s)	213, 254
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	5 cut(s)	106, 112, 282, 349, 465
TasI	AATT	3 cut(s)	153, 309, 541
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	5 cut(s)	238, 267, 293, 296, 299
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	4 cut(s)	28, 185, 299, 484
Tsp45I	GTSAC	1 cut(s)	427
TspGWI	ACGGA	3 cut(s)	396, 512, 544
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	383
XceI	RCATGY	2 cut(s)	235, 247
XhoI	CTCGAG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.