Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Forward (+)

18571072 .. 18571772

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAAAAGCTCTGAAACTCAAAGAGAAGCAACACCAGGGCCAAGCCATGCAAATATCGAAGCAACAACGACGAGAACCACAAGACCAGATCAAGCTTGCTGTCACTGCCATCACCCTCAATGCACGGTTGAGATCATCCGACATGCCTGCCCACATGCAAAACCACGCTCTCCGCCACACCCGATCACTCCTCGACTCACCACCAAACCCCAAAACTCGTCTCAACCCAACACACCTCGCTCGAGCTCTCAAAAAGGAGTTTGACTCGGTGTATGGACCGGCGTGGCACTGCGTGGTGGGGACGAGTTTTGGATCGTTCGTGACTCACTCAGCCGGCGGGTTCGTGTATTTCTCTGTCGACGAATCGCTGTCGGTGCTTCTCTTCAAAACGGAGGTCCAGTTGGTGACGGAACCACGACCACCACAACCATCTAAGCCTTCAACTTTGAGTCCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

9.82

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	2 cut(s)	175, 339
AclWI	GGATC	1 cut(s)	322
AdeI	CACNNNGTG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	388, 444
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	11, 97, 248
AluI	AGCT	3 cut(s)	11, 97, 248
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	381, 413
AspS9I	GGNCC	3 cut(s)	40, 278, 397
AsuHPI	GGTGA	3 cut(s)	106, 192, 418
AvaI	CYCGRG	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	278, 397
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	250
BccI	CCATC	2 cut(s)	119, 439
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	278, 397
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	3 cut(s)	40, 278, 397
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bse118I	RCCGGY	2 cut(s)	280, 335
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	281, 336
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	90, 134, 185, 314
BspACI	CCGC	2 cut(s)	175, 339
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	322
BsrFI	RCCGGY	2 cut(s)	280, 335
BsrI	ACTGG	1 cut(s)	400
BssAI	RCCGGY	2 cut(s)	280, 335
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	90, 134, 185, 314
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	389
BstC8I	GCNNGC	3 cut(s)	99, 150, 337
BstDEI	CTNAG	2 cut(s)	331, 435
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	93, 137, 188, 317
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	90, 134, 185, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 376
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	148, 160
BstSCI	CCNGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	137
BtsI	GCAGTG	2 cut(s)	105, 289
BtsIMutI	CAGTG	2 cut(s)	105, 289
Cac8I	GCNNGC	3 cut(s)	99, 150, 337
Cfr10I	RCCGGY	2 cut(s)	280, 335
Cfr13I	GGNCC	3 cut(s)	40, 278, 397
CviAII	CATG	3 cut(s)	49, 145, 157
CviJI	RGCY	7 cut(s)	11, 42, 47, 97, 248, 335, 439
CviKI_1	RGCY	7 cut(s)	11, 42, 47, 97, 248, 335, 439
DdeI	CTNAG	2 cut(s)	331, 435
DpnI	GATC	4 cut(s)	92, 136, 187, 316
DpnII	GATC	4 cut(s)	90, 134, 185, 314
DraIII	CACNNNGTG	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	278, 397
Eco53kI	GAGCTC	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	52, 148, 160
FaiI	YATR	4 cut(s)	50, 146, 158, 276
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	48, 144, 156
FauI	CCCGC	1 cut(s)	332
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	281, 336
Hin1II	CATG	3 cut(s)	52, 148, 160
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	5 cut(s)	197, 266, 325, 365, 451
HpaII	CCGG	2 cut(s)	281, 336
HphI	GGTGA	3 cut(s)	106, 192, 418
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	15, 142
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	2 cut(s)	75, 365
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	52, 125, 160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 376
HpyF3I	CTNAG	2 cut(s)	331, 435
Hsp92II	CATG	3 cut(s)	52, 148, 160
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	90, 134, 185, 314
LpnPI	CCDG	7 cut(s)	23, 50, 101, 162, 294, 349, 413
MaeIII	GTNAC	3 cut(s)	103, 322, 406
MalI	GATC	4 cut(s)	92, 136, 187, 316
MboI	GATC	4 cut(s)	90, 134, 185, 314
MboII	GAAGA	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	250
MlyI	GAGTC	4 cut(s)	191, 260, 319, 460
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	4 cut(s)	128, 203, 248, 388
MroNI	GCCGGC	1 cut(s)	335
MspI	CCGG	2 cut(s)	281, 336
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	107, 376
NaeI	GCCGGC	1 cut(s)	337
NdeII	GATC	4 cut(s)	90, 134, 185, 314
NgoMIV	GCCGGC	1 cut(s)	335
NlaIII	CATG	3 cut(s)	52, 148, 160
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	3 cut(s)	103, 322, 406
NspI	RCATGY	2 cut(s)	148, 160
PaeR7I	CTCGAG	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	365
PleI	GAGTC	4 cut(s)	191, 260, 319, 459
PpsI	GAGTC	4 cut(s)	191, 260, 319, 459
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	40, 278, 397
PspXI	VCTCGAGB	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	359
Sau3AI	GATC	4 cut(s)	90, 134, 185, 314
Sau96I	GGNCC	3 cut(s)	40, 278, 397
SchI	GAGTC	4 cut(s)	191, 260, 319, 460
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	5 cut(s)	13, 99, 240, 250, 399
Sfr274I	CTCGAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	278, 397
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SsiI	CCGC	2 cut(s)	175, 339
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	59, 195, 244, 360
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	2 cut(s)	112, 296
TseFI	GTSAC	3 cut(s)	103, 322, 406
Tsp45I	GTSAC	3 cut(s)	103, 322, 406
TspGWI	ACGGA	2 cut(s)	407, 425
TspRI	CASTG	2 cut(s)	112, 296
VpaK11BI	GGWCC	2 cut(s)	278, 397
XceI	RCATGY	2 cut(s)	148, 160
XhoI	CTCGAG	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.