Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Forward (+)

28350614 .. 28351251

Gene Structure 638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAAAAGCCGATCAAAAACAGAAGCAGCGCCACGAGCAAAACATATTGTTACCTCAACAACAACATAAGCAAGGCTACTCCGATCATGTCTGTCGGGATCGAGCTCAGGTTCAACCTCAGAGCAAAGTACAAGCAGGTCTAATTAGAGAAGTAGACCAGGAGGTGAAGTTAGCTGCCACCGCGATCAGCCTCAACGTACGGTTGAGATCATCGTCCAACATGCCGCACCACATGCAAGACCGTGCTCTCCGCCGCACCAGATCACTCATCGACTCAGCCGCCGACGCAGCAAAAGTACTATCCTCCAAACCACGGCCAAACCCAACTCATCTAGCTCGAGCTCTCAAAAAGGAGTTTGACTCGTTGTACGGACCGGCGTGGCACTGCGTGGTGGGAAAGAGTTTCGGGTCGTTCGTGACTCACTCGCCGGGTGGTTTCCTCTATTTTTCTATCGACGACTCGCTGTCGGTGCTGCTCTTTAAGACGGAGGTTCAGTTGGTTGCCGAACAACAACCACGGAAACCGGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

179

Amino Acids

20.05

Weight (kDa)

9.8

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	72 - 163	4.8e-25	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	185
AciI	CCGC	5 cut(s)	183, 227, 253, 256, 282
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	4 cut(s)	132, 201, 300, 371
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	116
AhdI	GACNNNNNGTC	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	4 cut(s)	107, 176, 338, 344
AluI	AGCT	4 cut(s)	107, 176, 338, 344
Alw21I	GWGCWC	3 cut(s)	109, 250, 346
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	4 cut(s)	28, 176, 290, 475
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	2 cut(s)	109, 346
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	3 cut(s)	109, 250, 346
BbvI	GCAGC	4 cut(s)	40, 163, 302, 462
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	432
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	7 cut(s)	29, 177, 227, 256, 282, 291, 476
BlsI	GCNGC	7 cut(s)	30, 178, 228, 257, 283, 292, 477
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	161, 432
Bme18I	GGWCC	1 cut(s)	374
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	374
BmrFI	CCNGG	2 cut(s)	161, 432
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
Bpu10I	CCTNAGC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	314, 518
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 482, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	2 cut(s)	376, 526
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	314, 518
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	122, 134, 291
BseXI	GCAGC	4 cut(s)	40, 163, 302, 462
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	319
BsiHKAI	GWGCWC	3 cut(s)	109, 250, 346
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	377, 431, 527
BsiWI	CGTACG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	315
BsnI	GGCC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	3 cut(s)	109, 250, 346
Bsp143I	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
BspACI	CCGC	5 cut(s)	183, 227, 253, 256, 282
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	3 cut(s)	121, 133, 290
BspFNI	CGCG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	108
BsrFI	RCCGGY	2 cut(s)	376, 526
BssAI	RCCGGY	2 cut(s)	376, 526
BssECI	CCNNGG	2 cut(s)	314, 518
BssMI	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	204, 245
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	108, 120, 277
BstDSI	CCRYGG	2 cut(s)	314, 518
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	6 cut(s)	16, 88, 103, 189, 212, 266
BstMBI	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 182, 235, 287, 290, 472
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	2 cut(s)	226, 238
BstSCI	CCNGG	2 cut(s)	159, 430
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	4 cut(s)	40, 163, 302, 462
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	2 cut(s)	314, 518
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
BveI	ACCTGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	376, 526
Cfr13I	GGNCC	1 cut(s)	374
CpoI	CGGWCCG	1 cut(s)	374
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	131, 200, 299, 370
CspI	CGGWCCG	1 cut(s)	374
CviAII	CATG	3 cut(s)	89, 223, 235
CviJI	RGCY	9 cut(s)	11, 78, 107, 176, 192, 281, 319, 338, 344
CviKI_1	RGCY	9 cut(s)	11, 78, 107, 176, 192, 281, 319, 338, 344
CviQI	GTAC	4 cut(s)	131, 200, 299, 370
DdeI	CTNAG	3 cut(s)	108, 120, 277
DpnI	GATC	6 cut(s)	15, 87, 102, 188, 211, 265
DpnII	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
DraIII	CACNNNGTG	1 cut(s)	391
DriI	GACNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	317
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	2 cut(s)	107, 344
Eco24I	GRGCYC	2 cut(s)	109, 346
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	2 cut(s)	107, 344
Eco88I	CYCGRG	1 cut(s)	339
EcoICRI	GAGCTC	2 cut(s)	107, 344
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	109, 346
FaeI	CATG	3 cut(s)	92, 226, 238
FaiI	YATR	5 cut(s)	47, 69, 90, 224, 236
FatI	CATG	3 cut(s)	88, 222, 234
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	7 cut(s)	29, 177, 227, 256, 282, 291, 476
FriOI	GRGCYC	2 cut(s)	109, 346
Fsp4HI	GCNGC	7 cut(s)	29, 177, 227, 256, 282, 291, 476
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	7 cut(s)	29, 177, 227, 256, 282, 291, 476
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	3 cut(s)	377, 431, 527
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	92, 226, 238
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	275, 362, 421, 461
HpaII	CCGG	3 cut(s)	377, 431, 527
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	85, 123
Hpy188III	TCNNGA	2 cut(s)	98, 418
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	2 cut(s)	290, 461
HpyCH4III	ACNGT	2 cut(s)	204, 245
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 182, 235, 287, 290, 472
HpyF3I	CTNAG	3 cut(s)	108, 120, 277
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	92, 226, 238
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
LpnPI	CCDG	7 cut(s)	95, 123, 146, 173, 274, 390, 444
Lsp1109I	GCAGC	4 cut(s)	40, 163, 302, 462
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	51, 418
MalI	GATC	6 cut(s)	15, 87, 102, 188, 211, 265
MboI	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
MhlI	GDGCHC	3 cut(s)	109, 250, 346
MluCI	AATT	2 cut(s)	144, 532
MlyI	GAGTC	4 cut(s)	269, 356, 415, 455
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	7 cut(s)	66, 129, 157, 203, 316, 452, 484
MseI	TTAA	1 cut(s)	483
MspI	CCGG	3 cut(s)	377, 431, 527
MspR9I	CCNGG	2 cut(s)	161, 432
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	6 cut(s)	37, 182, 235, 287, 290, 472
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
NlaIII	CATG	3 cut(s)	92, 226, 238
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	2 cut(s)	226, 238
PaeR7I	CTCGAG	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
Pfl23II	CGTACG	1 cut(s)	199
PkrI	GCNGC	7 cut(s)	30, 178, 228, 257, 283, 292, 477
PleI	GAGTC	4 cut(s)	269, 356, 415, 455
PpsI	GAGTC	4 cut(s)	269, 356, 415, 455
Psp124BI	GAGCTC	2 cut(s)	109, 346
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspLI	CGTACG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	374
PspXI	VCTCGAGB	1 cut(s)	339
RsaI	GTAC	4 cut(s)	132, 201, 300, 371
RsaNI	GTAC	4 cut(s)	131, 200, 299, 370
Rsr2I	CGGWCCG	1 cut(s)	374
RsrII	CGGWCCG	1 cut(s)	374
SacI	GAGCTC	2 cut(s)	109, 346
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	7 cut(s)	29, 177, 227, 256, 282, 291, 476
Sau3AI	GATC	6 cut(s)	13, 85, 100, 186, 209, 263
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	4 cut(s)	269, 356, 415, 455
ScrFI	CCNGG	2 cut(s)	161, 432
SduI	GDGCHC	3 cut(s)	109, 250, 346
Sfr274I	CTCGAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	2 cut(s)	144, 532
SsiI	CCGC	5 cut(s)	183, 227, 253, 256, 282
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	2 cut(s)	109, 346
StyD4I	CCNGG	2 cut(s)	159, 430
TaaI	ACNGT	2 cut(s)	204, 245
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	103, 273, 340, 456
TasI	AATT	2 cut(s)	144, 532
TatI	WGTACW	2 cut(s)	130, 298
TauI	GCSGC	3 cut(s)	229, 258, 284
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	4 cut(s)	28, 176, 290, 475
Tsp45I	GTSAC	1 cut(s)	418
TspGWI	ACGGA	3 cut(s)	387, 503, 535
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	374
XceI	RCATGY	2 cut(s)	226, 238
XhoI	CTCGAG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.