Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Forward (+)

31171786 .. 31172609

Gene Structure 824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1226300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAAAAGCTCTGAAACTCAAAGAGAAGCAAAGCCAGGGCCAAGCCATGCAAATATCGAAGCAACAACGACAAGAACCAGAAGACCAGATCAAGCTTGCTGTCGCTGCCATCACCCTCAATGCACGGTTGAGATCATCCGACATGCCTGCCCACATGCAAAACCACGCTCTCCGCCACACCAGATCACTCCTCGACTCACCACCACCACCACCAAACCCCAAAACTCGTCTCAACCCAACACACCTCGCTCGAGCTCTCAAAAAGTTTGACTCGGTGTATGGACCGGCGTGGCACTGCGTGGTGGGGACGAGTTTTGGATCGTTCGTGACTCACTCAACCGGCGGGTTCGTGTATTTCTCTGTCGACGAATCGCTGTCGGTGCTTCTCTTCAAAACGGAGGTCCAGTTGGTGACGGAACCACGACCACCACAACCAGCTAAGCCTTCAACTTTGAGTCCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

156

Amino Acids

17.18

Weight (kDa)

9.69

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	42 - 133	1.5e-23	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	2 cut(s)	175, 345
AclWI	GGATC	1 cut(s)	328
AdeI	CACNNNGTG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	394, 450
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	4 cut(s)	11, 97, 257, 440
AluI	AGCT	4 cut(s)	11, 97, 257, 440
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	107
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspS9I	GGNCC	3 cut(s)	40, 284, 403
AsuHPI	GGTGA	3 cut(s)	106, 192, 424
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	284, 403
BanII	GRGCYC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	108
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	284, 403
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	3 cut(s)	40, 284, 403
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bse118I	RCCGGY	2 cut(s)	286, 341
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	287, 342
BslFI	GGGAC	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	4 cut(s)	90, 134, 185, 320
Bsp1720I	GCTNAGC	1 cut(s)	441
BspACI	CCGC	2 cut(s)	175, 345
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	328
BsrFI	RCCGGY	2 cut(s)	286, 341
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	2 cut(s)	286, 341
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	4 cut(s)	90, 134, 185, 320
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	99, 150
BstDEI	CTNAG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	93, 137, 188, 323
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	4 cut(s)	90, 134, 185, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 382
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	2 cut(s)	148, 160
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	99, 150
Cfr10I	RCCGGY	2 cut(s)	286, 341
Cfr13I	GGNCC	3 cut(s)	40, 284, 403
CviAII	CATG	3 cut(s)	49, 145, 157
CviJI	RGCY	8 cut(s)	11, 36, 42, 47, 97, 257, 440, 445
CviKI_1	RGCY	8 cut(s)	11, 36, 42, 47, 97, 257, 440, 445
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	4 cut(s)	92, 136, 187, 322
DpnII	GATC	4 cut(s)	90, 134, 185, 320
DraIII	CACNNNGTG	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	284, 403
Eco53kI	GAGCTC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	52, 148, 160
FaiI	YATR	4 cut(s)	50, 146, 158, 282
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	48, 144, 156
FauI	CCCGC	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	287, 342
Hin1II	CATG	3 cut(s)	52, 148, 160
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	5 cut(s)	197, 272, 331, 371, 457
HpaII	CCGG	2 cut(s)	287, 342
HphI	GGTGA	3 cut(s)	106, 192, 424
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	15, 142
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	3 cut(s)	52, 125, 160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 382
HpyF3I	CTNAG	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	52, 148, 160
Kzo9I	GATC	4 cut(s)	90, 134, 185, 320
Lsp1109I	GCAGC	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	328, 412
MalI	GATC	4 cut(s)	92, 136, 187, 322
MboI	GATC	4 cut(s)	90, 134, 185, 320
MboII	GAAGA	2 cut(s)	95, 382
MhlI	GDGCHC	1 cut(s)	259
MlyI	GAGTC	4 cut(s)	191, 266, 325, 466
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	4 cut(s)	128, 203, 257, 394
MspI	CCGG	2 cut(s)	287, 342
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	107, 382
NdeII	GATC	4 cut(s)	90, 134, 185, 320
NlaIII	CATG	3 cut(s)	52, 148, 160
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	328, 412
NspI	RCATGY	2 cut(s)	148, 160
PaeR7I	CTCGAG	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	4 cut(s)	191, 266, 325, 465
PpsI	GAGTC	4 cut(s)	191, 266, 325, 465
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	3 cut(s)	40, 284, 403
PspXI	VCTCGAGB	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	259
SalI	GTCGAC	1 cut(s)	365
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	4 cut(s)	90, 134, 185, 320
Sau96I	GGNCC	3 cut(s)	40, 284, 403
SchI	GAGTC	4 cut(s)	191, 266, 325, 466
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	6 cut(s)	13, 99, 249, 259, 405, 442
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	284, 403
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SsiI	CCGC	2 cut(s)	175, 345
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	59, 195, 253, 366
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	2 cut(s)	328, 412
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	2 cut(s)	328, 412
TspGWI	ACGGA	2 cut(s)	413, 431
TspRI	CASTG	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	284, 403
XceI	RCATGY	2 cut(s)	148, 160
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.