Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Reverse (-)

65400097 .. 65401197

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCACTAAAGTTCTCATTGCTCCTAGTCATAAATTTAGCTCAGTCAAAGTTCAAACCTTCACCAACCCCCTCCCTCTTTCTCTCCGAGTCCATCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCCCTCTCTCTGTCCCTGTCTGTATCTATTTTCTCCGAGTCTCAAACTGGTTTCACATTTTGGTTAGACATTTCCTTCCTTTTTCTTCCTTCAATGTATTGAAAATGGAAAAATCCGATCAAAAACAGAAGCAGCGCCACGAGAAAAACATATTGTTACCTCAACAACAACAACATAAGCAAGGCTACTCCAATCATGTCTGTCGGGATCGAGTTCAGGCTCAACCTCAGAGCAAAGTACAAGCAGGTCTAATTAGAGAAGTAGACCAGGAGGTGAAGTTAGCTGCCACCGCGATCAGCCTCAACGTACGGTTGAGATCATCGTCCAACATGCCACACCACATGCAAGACCGTGCTCTCCGCAGCACCAGATCACTCATCGACTCAGCCGCCGCCGCAGCAAAAGCTCTATCCTCCAAACCACGGCCAAACCCAACTCATCTAGCTCGAGCTCTAAAAAAGGAGTTTGACTCGTTGTACGGACCGGCGTGGCACTGCGTGGTGGGAAAGAGTTTCGGGTCGTTCGTAACTCACTCGCCGGGTGGCTTCCTCTATTTTTCTATCGACGACTCGCTGTCGGTGCTGCTCTTTAAGACGGAGGTTCAGTTGGTCGCCCAACAACAACCACGGAAACCGGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

255

Amino Acids

28.58

Weight (kDa)

10.16

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	149 - 240	9.2e-25	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	416
AciI	CCGC	5 cut(s)	414, 484, 513, 516, 519
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	34
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	3 cut(s)	363, 432, 602
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	55, 217, 226
AhdI	GACNNNNNGTC	1 cut(s)	697
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	5 cut(s)	41, 407, 530, 569, 575
AluI	AGCT	5 cut(s)	41, 407, 530, 569, 575
Alw21I	GWGCWC	2 cut(s)	481, 577
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	570
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	5 cut(s)	256, 407, 486, 521, 706
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	2 cut(s)	54, 409
AvaI	CYCGRG	1 cut(s)	570
AvaII	GGWCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	481, 577
BbvI	GCAGC	5 cut(s)	268, 394, 498, 533, 693
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	26, 566
BfoI	RGCGCY	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	8 cut(s)	257, 408, 487, 513, 516, 519, 522, 707
BlsI	GCNGC	8 cut(s)	258, 409, 488, 514, 517, 520, 523, 708
Bme1390I	CCNGG	2 cut(s)	392, 663
Bme18I	GGWCC	1 cut(s)	605
BmeRI	GACNNNNNGTC	1 cut(s)	697
BmeT110I	CYCGRG	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	605
BmrFI	CCNGG	2 cut(s)	392, 663
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 578, 610
BpuMI	CCSGG	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	545, 749
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 416, 713, 743
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse118I	RCCGGY	2 cut(s)	607, 757
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	545, 749
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	3 cut(s)	56, 365, 522
BseNI	ACTGG	1 cut(s)	176
BseXI	GCAGC	5 cut(s)	268, 394, 498, 533, 693
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	550
BsiHKAI	GWGCWC	2 cut(s)	481, 577
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	3 cut(s)	608, 662, 758
BsiWI	CGTACG	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	570
Bsp1286I	GDGCHC	2 cut(s)	481, 577
Bsp143I	GATC	5 cut(s)	241, 331, 417, 440, 494
BspACI	CCGC	5 cut(s)	414, 484, 513, 516, 519
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	3 cut(s)	55, 364, 521
BspFNI	CGCG	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	17
BsrFI	RCCGGY	2 cut(s)	607, 757
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	2 cut(s)	607, 757
BssECI	CCNNGG	2 cut(s)	545, 749
BssMI	GATC	5 cut(s)	241, 331, 417, 440, 494
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	435, 476
Bst6I	CTCTTC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	42, 351, 508
BstDSI	CCRYGG	2 cut(s)	545, 749
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	5 cut(s)	244, 334, 420, 443, 497
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	241, 331, 417, 440, 494
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 518, 521, 527, 703
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	457, 469
BstSCI	CCNGG	2 cut(s)	390, 661
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	5 cut(s)	268, 394, 498, 533, 693
BsuRI	GGCC	1 cut(s)	550
BtgI	CCRYGG	2 cut(s)	545, 749
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	616
BveI	ACCTGC	1 cut(s)	359
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	2 cut(s)	607, 757
Cfr13I	GGNCC	1 cut(s)	605
CpoI	CGGWCCG	1 cut(s)	605
Csp6I	GTAC	3 cut(s)	362, 431, 601
CspI	CGGWCCG	1 cut(s)	605
CviAII	CATG	3 cut(s)	320, 454, 466
CviQI	GTAC	3 cut(s)	362, 431, 601
DdeI	CTNAG	3 cut(s)	42, 351, 508
DpnI	GATC	5 cut(s)	243, 333, 419, 442, 496
DpnII	GATC	5 cut(s)	241, 331, 417, 440, 494
DraIII	CACNNNGTG	1 cut(s)	622
DriI	GACNNNNNGTC	1 cut(s)	697
EaeI	YGGCCR	1 cut(s)	548
Eam1104I	CTCTTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	577
FaeI	CATG	3 cut(s)	323, 457, 469
FaiI	YATR	6 cut(s)	32, 275, 300, 321, 455, 467
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	319, 453, 465
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	8 cut(s)	257, 408, 487, 513, 516, 519, 522, 707
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	8 cut(s)	257, 408, 487, 513, 516, 519, 522, 707
FspBI	CTAG	2 cut(s)	26, 566
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	8 cut(s)	257, 408, 487, 513, 516, 519, 522, 707
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	3 cut(s)	608, 662, 758
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	323, 457, 469
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	5 cut(s)	89, 162, 506, 593, 692
HpaII	CCGG	3 cut(s)	608, 662, 758
HphI	GGTGA	2 cut(s)	54, 409
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	88, 161, 241, 354
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	3 cut(s)	69, 209, 223
HpyCH4III	ACNGT	2 cut(s)	435, 476
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 518, 521, 527, 703
HpyF3I	CTNAG	3 cut(s)	42, 351, 508
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	323, 457, 469
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	241, 331, 417, 440, 494
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	9 cut(s)	153, 157, 326, 354, 377, 404, 505, 621, 675
Lsp1109I	GCAGC	5 cut(s)	268, 394, 498, 533, 693
MaeI	CTAG	2 cut(s)	26, 566
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	279, 649
MalI	GATC	5 cut(s)	243, 333, 419, 442, 496
MboI	GATC	5 cut(s)	241, 331, 417, 440, 494
MboII	GAAGA	2 cut(s)	108, 201
MhlI	GDGCHC	2 cut(s)	481, 577
MluCI	AATT	3 cut(s)	34, 375, 763
MlyI	GAGTC	5 cut(s)	98, 171, 500, 587, 686
MmeI	TCCRAC	1 cut(s)	474
MseI	TTAA	1 cut(s)	714
MspI	CCGG	3 cut(s)	608, 662, 758
MspR9I	CCNGG	2 cut(s)	392, 663
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	5 cut(s)	413, 518, 521, 527, 703
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	5 cut(s)	241, 331, 417, 440, 494
NlaIII	CATG	3 cut(s)	323, 457, 469
NspI	RCATGY	2 cut(s)	457, 469
PaeR7I	CTCGAG	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
Pfl23II	CGTACG	1 cut(s)	430
PkrI	GCNGC	8 cut(s)	258, 409, 488, 514, 517, 520, 523, 708
PleI	GAGTC	5 cut(s)	97, 170, 500, 587, 686
PpsI	GAGTC	5 cut(s)	97, 170, 500, 587, 686
Psp124BI	GAGCTC	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspLI	CGTACG	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	605
PspXI	VCTCGAGB	1 cut(s)	570
RsaI	GTAC	3 cut(s)	363, 432, 602
RsaNI	GTAC	3 cut(s)	362, 431, 601
Rsr2I	CGGWCCG	1 cut(s)	605
RsrII	CGGWCCG	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	8 cut(s)	257, 408, 487, 513, 516, 519, 522, 707
Sau3AI	GATC	5 cut(s)	241, 331, 417, 440, 494
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	5 cut(s)	98, 171, 500, 587, 686
ScrFI	CCNGG	2 cut(s)	392, 663
SduI	GDGCHC	2 cut(s)	481, 577
Sfr274I	CTCGAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	34, 375, 763
SsiI	CCGC	5 cut(s)	414, 484, 513, 516, 519
SspMI	CTAG	2 cut(s)	26, 566
SstI	GAGCTC	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	390, 661
TaaI	ACNGT	2 cut(s)	435, 476
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	4 cut(s)	334, 504, 571, 687
TasI	AATT	3 cut(s)	34, 375, 763
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	3 cut(s)	515, 518, 521
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	623
TseI	GCWGC	5 cut(s)	256, 407, 486, 521, 706
TspGWI	ACGGA	3 cut(s)	618, 734, 766
TspRI	CASTG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	2 cut(s)	457, 469
XhoI	CTCGAG	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	26, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.