Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014694

Physical Location & Seq

Genomic Coordinates Forward (+)

27688907 .. 27689997

Gene Structure 1091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG242000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAAAATCCGATCAAAAACAGAAGCAGCGCCACGAGCAAAACATATTGTTACCTCAACAACAACAACAACATAAGCAAGGCTACTCCGATCATGTCTGTCGAGATCGAGTTCAGGCTCAACCTCAGAGCAAAGTACAAGCAGGTCTAATTAGAGAAGTAGACCAGGAGGTGAAGTTAGCTGCCACCGCGATCAGCCTCAACGTACGGTTGAGATCATCGTCCCACATGCCGCACCACATGCAAGACCGTGCTCTCCGCCGCACCAGATCACTCATCGACTCAGCCGCCGCCGCAGCAAAAGCACTTTCCTCCAAACCACGGCCAAACCCAACTCACATTGCTCGAGCTCTCAAAAAGGAGTTTGACTCGTTGTACGGACCGGCGTGGCACTGCGTGGTGGGAAAGAGTTTCGGGTCGTTCGTGACTCACTCGCCGGGTGGTTTCCTCTATTTTTCTATCGACGACTCGCTGTCGGTGCTGCTCTTTAAGACGGAGGTTCAGTTGGTTGCCGAACAACAACCACGGAAACCGGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

180

Amino Acids

20.27

Weight (kDa)

9.9

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	74 - 165	1.5e-25	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20170
malus_domestica	MD03G1226300.v1.1 MD11G1244800.v1.1
prunus_persica	Prupe.4G183100_v2.0.a1
pyrus_communis	pycom03g17400
rosa_chinensis	RchiOBHm_Chr5g0033981
rosa_laevigata	RLG00000033516
rosa_multiflora	Rmu_co8482145.1_g000001 Rmu_sc0012341.1_g000008 Rmu_sc0014753.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046250
rosa_rugosa	Rorug05G0143900
rosa_samantha	Rh5AG234800 Rh5BG235600 Rh5CG265400 Rh5DG242000
rosa_wichuraiana	Rw5G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	191
AciI	CCGC	7 cut(s)	189, 233, 259, 262, 288, 291, 294
AcoI	YGGCCR	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	3 cut(s)	138, 207, 377
AfiI	CCNNNNNNNGG	1 cut(s)	321
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	182, 350
AluI	AGCT	2 cut(s)	182, 350
Alw21I	GWGCWC	2 cut(s)	256, 352
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	4 cut(s)	28, 182, 296, 481
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	256, 352
BbvI	GCAGC	4 cut(s)	40, 169, 308, 468
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	9 cut(s)	29, 183, 233, 262, 288, 291, 294, 297, 482
BlsI	GCNGC	9 cut(s)	30, 184, 234, 263, 289, 292, 295, 298, 483
Bme1390I	CCNGG	2 cut(s)	167, 438
Bme18I	GGWCC	1 cut(s)	380
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	2 cut(s)	167, 438
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
BpuMI	CCSGG	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	320, 524
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 488, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	2 cut(s)	382, 532
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	320, 524
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	140, 297
BseXI	GCAGC	4 cut(s)	40, 169, 308, 468
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	256, 352
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	383, 437, 533
BsiWI	CGTACG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	256, 352
Bsp143I	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
BspACI	CCGC	7 cut(s)	189, 233, 259, 262, 288, 291, 294
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	139, 296
BspFNI	CGCG	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	2 cut(s)	382, 532
BssAI	RCCGGY	2 cut(s)	382, 532
BssECI	CCNNGG	2 cut(s)	320, 524
BssMI	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	210, 251
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	126, 283
BstDSI	CCRYGG	2 cut(s)	320, 524
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	6 cut(s)	16, 94, 109, 195, 218, 272
BstMBI	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 188, 241, 293, 296, 302, 478
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	2 cut(s)	232, 244
BstSCI	CCNGG	2 cut(s)	165, 436
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	4 cut(s)	40, 169, 308, 468
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	2 cut(s)	320, 524
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	382, 532
Cfr13I	GGNCC	1 cut(s)	380
CpoI	CGGWCCG	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	137, 206, 376
CspI	CGGWCCG	1 cut(s)	380
CviAII	CATG	3 cut(s)	95, 229, 241
CviJI	RGCY	7 cut(s)	84, 119, 182, 198, 287, 325, 350
CviKI_1	RGCY	7 cut(s)	84, 119, 182, 198, 287, 325, 350
CviQI	GTAC	3 cut(s)	137, 206, 376
DdeI	CTNAG	2 cut(s)	126, 283
DpnI	GATC	6 cut(s)	15, 93, 108, 194, 217, 271
DpnII	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
DraIII	CACNNNGTG	1 cut(s)	397
DriI	GACNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	323
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	3 cut(s)	98, 232, 244
FaiI	YATR	5 cut(s)	47, 75, 96, 230, 242
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	3 cut(s)	94, 228, 240
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	9 cut(s)	29, 183, 233, 262, 288, 291, 294, 297, 482
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	9 cut(s)	29, 183, 233, 262, 288, 291, 294, 297, 482
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	9 cut(s)	29, 183, 233, 262, 288, 291, 294, 297, 482
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	3 cut(s)	383, 437, 533
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	98, 232, 244
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	281, 368, 427, 467
HpaII	CCGG	3 cut(s)	383, 437, 533
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	13, 91, 129
Hpy188III	TCNNGA	2 cut(s)	104, 424
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	210, 251
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 188, 241, 293, 296, 302, 478
HpyF3I	CTNAG	2 cut(s)	126, 283
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	98, 232, 244
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
LpnPI	CCDG	7 cut(s)	101, 129, 152, 179, 280, 396, 450
Lsp1109I	GCAGC	4 cut(s)	40, 169, 308, 468
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	51, 424
MalI	GATC	6 cut(s)	15, 93, 108, 194, 217, 271
MboI	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
MhlI	GDGCHC	2 cut(s)	256, 352
MluCI	AATT	2 cut(s)	150, 538
MlyI	GAGTC	4 cut(s)	275, 362, 421, 461
MnlI	CCTC	7 cut(s)	66, 135, 163, 209, 322, 458, 490
MseI	TTAA	1 cut(s)	489
MspI	CCGG	3 cut(s)	383, 437, 533
MspR9I	CCNGG	2 cut(s)	167, 438
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	7 cut(s)	37, 188, 241, 293, 296, 302, 478
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
NlaIII	CATG	3 cut(s)	98, 232, 244
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	2 cut(s)	232, 244
PaeR7I	CTCGAG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
Pfl23II	CGTACG	1 cut(s)	205
PkrI	GCNGC	9 cut(s)	30, 184, 234, 263, 289, 292, 295, 298, 483
PleI	GAGTC	4 cut(s)	275, 362, 421, 461
PpsI	GAGTC	4 cut(s)	275, 362, 421, 461
Psp124BI	GAGCTC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspLI	CGTACG	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	380
PspXI	VCTCGAGB	1 cut(s)	345
RsaI	GTAC	3 cut(s)	138, 207, 377
RsaNI	GTAC	3 cut(s)	137, 206, 376
Rsr2I	CGGWCCG	1 cut(s)	380
RsrII	CGGWCCG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	9 cut(s)	29, 183, 233, 262, 288, 291, 294, 297, 482
Sau3AI	GATC	6 cut(s)	13, 91, 106, 192, 215, 269
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	4 cut(s)	275, 362, 421, 461
ScrFI	CCNGG	2 cut(s)	167, 438
SduI	GDGCHC	2 cut(s)	256, 352
SetI	ASST	8 cut(s)	58, 127, 148, 174, 184, 207, 352, 501
Sfr274I	CTCGAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	380
SlaI	CTCGAG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	150, 538
SsiI	CCGC	7 cut(s)	189, 233, 259, 262, 288, 291, 294
SstI	GAGCTC	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	165, 436
TaaI	ACNGT	2 cut(s)	210, 251
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	5 cut(s)	103, 109, 279, 346, 462
TasI	AATT	2 cut(s)	150, 538
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	5 cut(s)	235, 264, 290, 293, 296
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	28, 182, 296, 481
Tsp45I	GTSAC	1 cut(s)	424
TspGWI	ACGGA	3 cut(s)	393, 509, 541
TspRI	CASTG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	380
XceI	RCATGY	2 cut(s)	232, 244
XhoI	CTCGAG	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.