FvH4_3g22021

zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016791
Physical Location & Seq
Forward (+)
15107916 .. 15108472
557 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22021.t1

Sequence Viewer

Length: 459 bp
ATGATGTCACATGAGAAAGATACAAAGGAAATTGCTTATATCGCAACTGGGGATCATCCAGGAAATCGCGTTTCGATAATTGAAGTAGAAAATGGAGCAACGAAGGAGATTGAAATATTCTACTTGCAGGAGAGTTACACAGACTCAAATGGCTCCTACGTAGTTTACGCACCAATTGACCAGTTCGCCATGTCTGCTCTGTTGGATGGCTCGAACCCCGATGAGTTTGCTATCCTTGCATCTGGGTTTTCCATCCTGCCTGATAGACCAATGGCCAATGATGAATCTGGTGGAAGTCTGCTGACTCTCGCTTTGCACATCACAGAAGAAGGAGCAACTGAGGACTTTATCCCTCCTCGTACTGTTCAAAATATACTCAACATTATTGCAGGAACTGTAGTCCAGATCACTGATGTACTATCAAATAATGGAGAAAATAGTGTTGAACCAGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

153

Amino Acids

16.46

Weight (kDa)

4.05

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDF2_C PF25797 1 - 140 2.1e-31 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g22020 FvH4_3g22021
malus_domestica MD11G1223900.v1.1
prunus_persica Prupe.4G205900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0037891
rosa_laevigata RLG00000033820
rosa_multiflora Rmu_sc0005416.1_g000025
rosa_roxburghii Rroxscaffold_1G00043030
rosa_rugosa Rorug05G0168500
rosa_samantha Rh5AG257100 Rh5BG259700 Rh5CG292700 Rh5DG269600
rosa_wichuraiana Rw5G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 273
AfaI GTAC 2 cut(s) 361, 417
AgsI TTSAA 4 cut(s) 83, 113, 368, 446
AjnI CCWGG 1 cut(s) 58
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
BalI TGGCCA 1 cut(s) 275
BccI CCATC 2 cut(s) 200, 260
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 52, 181
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 55, 211, 252
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 52, 181
BseRI GAGGAG 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 275
BsnI GGCC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 52, 405
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 60
BsrI ACTGG 2 cut(s) 52, 181
BssMI GATC 2 cut(s) 52, 405
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 364, 397
BstBAI YACGTR 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 55, 211, 252
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 2 cut(s) 55, 408
BstMBI GATC 2 cut(s) 52, 405
BstMWI GCNNNNNNNGC 3 cut(s) 41, 194, 236
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 396
BstSNI TACGTA 1 cut(s) 160
BstUI CGCG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 3 cut(s) 55, 211, 252
BtsIMutI CAGTG 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 395
Csp6I GTAC 2 cut(s) 360, 416
CviAII CATG 2 cut(s) 11, 190
CviJI RGCY 3 cut(s) 153, 210, 275
CviKI_1 RGCY 3 cut(s) 153, 210, 275
CviQI GTAC 2 cut(s) 360, 416
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 54, 407
DpnII GATC 2 cut(s) 52, 405
EaeI YGGCCR 1 cut(s) 273
Eco105I TACGTA 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 14, 193
FaiI YATR 4 cut(s) 12, 39, 191, 374
FatI CATG 2 cut(s) 10, 189
FokI GGATG 3 cut(s) 42, 218, 239
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 2 cut(s) 14, 193
HinfI GANTC 3 cut(s) 143, 284, 304
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 97, 323
HpyCH4III ACNGT 2 cut(s) 364, 397
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 4 cut(s) 127, 239, 316, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 194, 236
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 2 cut(s) 14, 193
Kzo9I GATC 2 cut(s) 52, 405
LmnI GCTCC 3 cut(s) 95, 158, 332
LweI GCATC 1 cut(s) 248
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 6, 134
MalI GATC 2 cut(s) 54, 407
MboI GATC 2 cut(s) 52, 405
MboII GAAGA 1 cut(s) 338
MfeI CAATTG 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 3 cut(s) 30, 78, 174
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 137, 298
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 3 cut(s) 334, 363, 366
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 41, 194, 236
NdeII GATC 2 cut(s) 52, 405
NlaIII CATG 2 cut(s) 14, 193
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 58
PleI GAGTC 2 cut(s) 137, 298
PpsI GAGTC 2 cut(s) 137, 298
Ppu21I YACGTR 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 361, 417
RsaNI GTAC 2 cut(s) 360, 416
Sau3AI GATC 2 cut(s) 52, 405
SchI GAGTC 2 cut(s) 137, 298
ScrFI CCNGG 1 cut(s) 60
SetI ASST 1 cut(s) 162
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 396
SnaBI TACGTA 1 cut(s) 160
Sse9I AATT 3 cut(s) 30, 78, 174
SspI AATATT 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 364, 397
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 74, 212
TasI AATT 3 cut(s) 30, 78, 174
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 1 cut(s) 284
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.