RLG00000033820

zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016791
Physical Location & Seq
Forward (+)
32627589 .. 32631375
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033820

Sequence Viewer

Length: 1755 bp
ATGGACAGCAGTATTTCACAAATTGAGGTAGACATGAGAATACCTCAACATGCAACACCATCTCAGCAAGTCTCATTGGAGAATATGGGGTCAAATGTCCAGGTTGCAAGCAATATTTCCAGAGCCAGTGATCTACTCATGGCAGTAACTTCAAGTGCTGAAGTCAACAGAATGAAAATCAGTGATTTAGCTTCTGAAGCAATGGAAGAGCTAACTAAATTGGCCCTAGCTCGAGAACCTCTATGGCAGTGTGACATAGAGAGCAAAACTGAATTTCTTAGTGATATCGAGTATCTGAGGGAATTTGGACACATAAGTACCTCATTGATAGAAATCATTAGAATGGTTGAGGTGGGAGACTCTCAATCTGACCTGCCAAGATTCGGAAGCATCAACAATTCTGAATTTTCTATGGAAAGTGAATATAGGCCAATATCGACAACAAATCAACCTGGAAAACCAGTGAGTTTGGAATCTTCACGAGCTATTGACTATGTCAAAATGAAAGCAGTCAACATTGTTCAATTGCTAATGGATTTGAAGCAATGGCTACTGGTGTTTCCTAATATTGTAACTAGAGCAAAAGTAGTGGGAGTATTATCATCAACAAGATTCGAAGGCAACTATGATGGAACTCTGCAAGTGATGACAGCTGAGTTTCATGCCCCAACACCACTTATTCCCCCTAGAGAAAGTTATTTTGCAAGGTATAGTAAACAGCTGGACAGGGGAATGTGGGTAGTTGTTGATGTATCCTTGGAAAAATTGTTTCAGTTTCCATCAACAAACTTTCGAAGACAACCATCAGGATGTTTAATTCAGGAAATGTCAAATGGATGCTCTAAGGTCATATGGGTGGAGCATGTGGAAGTGGATAATAGAACGGTTCACAATATGTTTAAGCCACTGGTCAGTTCTGGTTTTGCATTTAGCGCAAAGCGTTGGGTTTCCACTTTTGTTCGACAATGTGAATGGTTGGCAACTTTAAATTCTACAAGCCCTCCTACATCAGATTGTATGCTCATATCGCAAGCTGGAAGAAAAAGCTTGTTGAAGCTTTCGGAGAGGATGATGAGAAGTTTTGTTGCTGATATTAGTGCTTCTACAGAAAACAAATGGAGGGCACTACCTGCATTTGGTGCCGAAGATGTAAAGGTCACAACTAAAACTAGCTTAAATGACCCTGGAAAGCCTCCAGGTACCACCTTATTATTTGCTACTTCTGTCCATCTTCCAGTCCCAAGAACTCAAATATACAATCTGCTTCGCAATGGTGAATCTCGAATCATGTGGGATATGATGTCGTATGAAAAAGATACAAGAGAAATTGCTTATATCGCAACTGGGGACCATCCAGGAAATCGCGTTTCGATAATTGAAGTAGAAAATGGTGTAACGAAGGAGATTGAAGTTTTCTACTTCCAGGAGAGTTACACAGACTCAAATGGCTCGTACATAGTTTACGCACCGATTGACCAGTTCGCCATGTCTGCTCTCTTGGATGGCGCAAACCCAGACCATGTTGCTATCCTCGCATCCGGATTTTCCATCCTTCCTGATAGACCAATGGCCAATGATGAATCTGGTGGAAGTCTGTTGACTCTTGCGTTGCACATCACCGAAGGAGGAGCAACGGAGGAATATCTCCCTCCTCAAACTGTTCAAAATATACTTAACATTATTGCCGGAACTGTGATTCAAATCACAGAAGTATTATCAAAAGATGGAGAAAATAGTGTTGAATCAGAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

585

Amino Acids

64.99

Weight (kDa)

4.99

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 139 - 324 3.2e-33 START domain
PDF2_C PF25797 344 - 572 3.5e-62 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g22020 FvH4_3g22021
malus_domestica MD11G1223900.v1.1
prunus_persica Prupe.4G205900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0037891
rosa_laevigata RLG00000033820
rosa_multiflora Rmu_sc0005416.1_g000025
rosa_roxburghii Rroxscaffold_1G00043030
rosa_rugosa Rorug05G0168500
rosa_samantha Rh5AG257100 Rh5BG259700 Rh5CG292700 Rh5DG269600
rosa_wichuraiana Rw5G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 381, 1138
Acc65I GGTACC 1 cut(s) 1199
AccB1I GGYRCC 2 cut(s) 1139, 1199
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 1365
AccIII TCCGGA 1 cut(s) 1538
AcoI YGGCCR 1 cut(s) 1569
AcsI RAATTY 4 cut(s) 272, 302, 404, 988
AcuI CTGAAG 2 cut(s) 180, 216
AfaI GTAC 3 cut(s) 319, 1201, 1454
AfiI CCNNNNNNNGG 2 cut(s) 383, 1136
AgsI TTSAA 9 cut(s) 153, 524, 541, 1054, 1379, 1409, 1664, 1700, 1742
AjnI CCWGG 6 cut(s) 99, 451, 1183, 1195, 1354, 1422
Alw26I GTCTC 2 cut(s) 76, 351
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 1538
AoxI GGCC 3 cut(s) 222, 428, 1569
ApoI RAATTY 4 cut(s) 272, 302, 404, 988
Asp718I GGTACC 1 cut(s) 1199
AspLEI GCGC 2 cut(s) 935, 1508
AspS9I GGNCC 2 cut(s) 223, 1348
AsuHPI GGTGA 2 cut(s) 1286, 1609
AsuII TTCGAA 2 cut(s) 615, 793
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 1 cut(s) 1348
BaeGI GKGCMC 1 cut(s) 1126
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BalI TGGCCA 1 cut(s) 1571
BanI GGYRCC 2 cut(s) 1139, 1199
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 802
BccI CCATC 9 cut(s) 67, 623, 787, 811, 1236, 1359, 1496, 1556, 1718
BciT130I CCWGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
BciVI GTATCC 1 cut(s) 763
BcoDI GTCTC 2 cut(s) 76, 351
BfaI CTAG 4 cut(s) 227, 576, 687, 1170
BfmI CTRYAG 1 cut(s) 1104
BfuAI ACCTGC 2 cut(s) 381, 1138
BfuI GTATCC 1 cut(s) 763
Bme1390I CCNGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
Bme18I GGWCC 1 cut(s) 1348
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 223, 1348
BmiI GGNNCC 3 cut(s) 1141, 1201, 1349
BmrFI CCNGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
BmrI ACTGGG 1 cut(s) 1353
BmsI GCATC 3 cut(s) 399, 827, 1544
BmuI ACTGGG 1 cut(s) 1353
BpiI GAAGAC 1 cut(s) 802
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 1179
Bpu14I TTCGAA 2 cut(s) 615, 793
BsaBI GATNNNNATC 2 cut(s) 332, 1700
BsaJI CCNNGG 2 cut(s) 756, 1183
BsaWI WCCGGW 1 cut(s) 1538
BsaXI ACNNNNNCTCC 2 cut(s) 985, 1015
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 1136
Bse1I ACTGG 7 cut(s) 126, 461, 558, 912, 1235, 1348, 1477
Bse3DI GCAATG 3 cut(s) 207, 551, 1276
Bse8I GATNNNNATC 2 cut(s) 332, 1700
BseAI TCCGGA 1 cut(s) 1538
BseBI CCWGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
BseDI CCNNGG 2 cut(s) 756, 1183
BseGI GGATG 7 cut(s) 815, 842, 1074, 1351, 1507, 1535, 1548
BseJI GATNNNNATC 2 cut(s) 332, 1700
BseLI CCNNNNNNNGG 2 cut(s) 383, 1136
BseMI GCAATG 3 cut(s) 207, 551, 1276
BseMII CTCAG 3 cut(s) 77, 287, 645
BseNI ACTGG 7 cut(s) 126, 461, 558, 912, 1235, 1348, 1477
BseRI GAGGAG 2 cut(s) 1641, 1641
BseSI GKGCMC 1 cut(s) 1126
Bsh1236I CGCG 1 cut(s) 1365
BshFI GGCC 3 cut(s) 224, 430, 1571
BshNI GGYRCC 2 cut(s) 1139, 1199
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 1539, 1686
BslFI GGGAC 2 cut(s) 1223, 1361
BslI CCNNNNNNNGG 2 cut(s) 383, 1136
BsmAI GTCTC 2 cut(s) 76, 351
BsmFI GGGAC 2 cut(s) 1223, 1361
BsnI GGCC 3 cut(s) 224, 430, 1571
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 2 cut(s) 615, 793
Bsp1286I GDGCHC 1 cut(s) 1126
Bsp13I TCCGGA 1 cut(s) 1538
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 3 cut(s) 224, 430, 1571
BspCNI CTCAG 3 cut(s) 76, 288, 646
BspEI TCCGGA 1 cut(s) 1538
BspFNI CGCG 1 cut(s) 1365
BspLI GGNNCC 3 cut(s) 1141, 1201, 1349
BspMI ACCTGC 2 cut(s) 381, 1138
BspQI GCTCTTC 1 cut(s) 201
BspT104I TTCGAA 2 cut(s) 615, 793
BspT107I GGYRCC 2 cut(s) 1139, 1199
BsrDI GCAATG 3 cut(s) 207, 551, 1276
BsrI ACTGG 7 cut(s) 126, 461, 558, 912, 1235, 1348, 1477
BssECI CCNNGG 2 cut(s) 756, 1183
BssMI GATC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 756
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
Bst4CI ACNGT 3 cut(s) 886, 1660, 1693
Bst6I CTCTTC 1 cut(s) 201
BstAPI GCANNNNNTGC 2 cut(s) 1130, 1139
BstBI TTCGAA 2 cut(s) 615, 793
BstC8I GCNNGC 2 cut(s) 109, 1032
BstDEI CTNAG 5 cut(s) 63, 278, 296, 654, 843
BstF5I GGATG 7 cut(s) 815, 842, 1074, 1351, 1507, 1535, 1548
BstFNI CGCG 1 cut(s) 1365
BstHHI GCGC 2 cut(s) 935, 1508
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 2 cut(s) 76, 351
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 8 cut(s) 197, 932, 1027, 1130, 1139, 1337, 1490, 1532
BstNI CCWGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
BstNSI RCATGY 2 cut(s) 53, 866
BstSCI CCNGG 6 cut(s) 99, 451, 1183, 1195, 1354, 1422
BstSFI CTRYAG 1 cut(s) 1104
BstSLI GKGCMC 1 cut(s) 1126
BstUI CGCG 1 cut(s) 1365
BstV2I GAAGAC 1 cut(s) 802
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 3 cut(s) 224, 430, 1571
BtsCI GGATG 7 cut(s) 815, 842, 1074, 1351, 1507, 1535, 1548
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 5 cut(s) 133, 187, 254, 468, 905
BveI ACCTGC 2 cut(s) 381, 1138
Cac8I GCNNGC 2 cut(s) 109, 1032
CfoI GCGC 2 cut(s) 935, 1508
Cfr13I GGNCC 2 cut(s) 223, 1348
Csp6I GTAC 3 cut(s) 318, 1200, 1453
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 8 cut(s) 34, 50, 139, 662, 863, 1288, 1486, 1520
CviQI GTAC 3 cut(s) 318, 1200, 1453
DdeI CTNAG 5 cut(s) 63, 278, 296, 654, 843
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DraI TTTAAA 1 cut(s) 987
EaeI YGGCCR 1 cut(s) 1569
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 756
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 1348
Eco57I CTGAAG 2 cut(s) 180, 216
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 6 cut(s) 99, 451, 1183, 1195, 1354, 1422
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 8 cut(s) 37, 53, 142, 665, 866, 1291, 1489, 1523
FaqI GGGAC 2 cut(s) 1223, 1361
FatI CATG 8 cut(s) 33, 49, 138, 661, 862, 1287, 1485, 1519
FauNDI CATATG 1 cut(s) 851
FblI GTMKAC 1 cut(s) 30
FokI GGATG 7 cut(s) 822, 849, 1081, 1338, 1514, 1522, 1535
FspBI CTAG 4 cut(s) 227, 576, 687, 1170
GlaI GCGC 2 cut(s) 934, 1507
GsuI CTGGAG 1 cut(s) 1179
HaeIII GGCC 3 cut(s) 224, 430, 1571
HapII CCGG 2 cut(s) 1539, 1686
HhaI GCGC 2 cut(s) 935, 1508
Hin1II CATG 8 cut(s) 37, 53, 142, 665, 866, 1291, 1489, 1523
Hin6I GCGC 2 cut(s) 933, 1506
HinP1I GCGC 2 cut(s) 933, 1506
HincII GTYRAC 3 cut(s) 166, 514, 1599
HindII GTYRAC 3 cut(s) 166, 514, 1599
HindIII AAGCTT 2 cut(s) 1045, 1055
HpaII CCGG 2 cut(s) 1539, 1686
HphI GGTGA 2 cut(s) 1286, 1609
Hpy166II GTNNAC 7 cut(s) 31, 166, 514, 716, 889, 1462, 1599
Hpy188I TCNGA 8 cut(s) 196, 297, 370, 386, 403, 1012, 1063, 1747
Hpy188III TCNNGA 8 cut(s) 120, 233, 480, 807, 821, 1281, 1539, 1556
Hpy8I GTNNAC 7 cut(s) 31, 166, 514, 716, 889, 1462, 1599
HpyAV CCTTC 4 cut(s) 611, 1393, 1562, 1616
HpyCH4III ACNGT 3 cut(s) 886, 1660, 1693
HpyCH4V TGCA 7 cut(s) 53, 107, 640, 704, 926, 1133, 1612
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 932, 1027, 1130, 1139, 1337, 1490, 1532
HpyF3I CTNAG 5 cut(s) 63, 278, 296, 654, 843
Hsp92II CATG 8 cut(s) 37, 53, 142, 665, 866, 1291, 1489, 1523
HspAI GCGC 2 cut(s) 933, 1506
Kpn2I TCCGGA 1 cut(s) 1538
KpnI GGTACC 1 cut(s) 1203
Kzo9I GATC 1 cut(s) 130
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 2 cut(s) 859, 1628
LweI GCATC 3 cut(s) 399, 827, 1544
MaeI CTAG 4 cut(s) 227, 576, 687, 1170
MaeIII GTNAC 6 cut(s) 145, 251, 571, 1156, 1393, 1430
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 6 cut(s) 218, 468, 807, 1050, 1157, 1223
MfeI CAATTG 1 cut(s) 524
MhlI GDGCHC 1 cut(s) 1126
MlsI TGGCCA 1 cut(s) 1571
MluNI TGGCCA 1 cut(s) 1571
MlyI GAGTC 3 cut(s) 353, 1433, 1594
Mox20I TGGCCA 1 cut(s) 1571
MroI TCCGGA 1 cut(s) 1538
MscI TGGCCA 1 cut(s) 1571
MseI TTAA 5 cut(s) 815, 900, 986, 1175, 1674
MslI CAYNNNNRTG 3 cut(s) 341, 808, 854
Msp20I TGGCCA 1 cut(s) 1571
MspA1I CMGCKG 2 cut(s) 653, 721
MspI CCGG 2 cut(s) 1539, 1686
MspR9I CCNGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
MunI CAATTG 1 cut(s) 524
MvaI CCWGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
MvnI CGCG 1 cut(s) 1365
MwoI GCNNNNNNNGC 8 cut(s) 197, 932, 1027, 1130, 1139, 1337, 1490, 1532
NdeI CATATG 1 cut(s) 851
NdeII GATC 1 cut(s) 130
NlaIII CATG 8 cut(s) 37, 53, 142, 665, 866, 1291, 1489, 1523
NlaIV GGNNCC 3 cut(s) 1141, 1201, 1349
NmuCI GTSAC 2 cut(s) 251, 1156
NspI RCATGY 2 cut(s) 53, 866
NspV TTCGAA 2 cut(s) 615, 793
PaeR7I CTCGAG 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 201
PfeI GAWTC 8 cut(s) 381, 473, 612, 1277, 1284, 1580, 1696, 1742
PflFI GACNNNGTC 1 cut(s) 494
PfoI TCCNGGA 2 cut(s) 1354, 1422
PleI GAGTC 3 cut(s) 353, 1433, 1594
PpsI GAGTC 3 cut(s) 353, 1433, 1594
Psp6I CCWGG 6 cut(s) 99, 451, 1183, 1195, 1354, 1422
PspGI CCWGG 6 cut(s) 99, 451, 1183, 1195, 1354, 1422
PspN4I GGNNCC 3 cut(s) 1141, 1201, 1349
PspPI GGNCC 2 cut(s) 223, 1348
PsyI GACNNNGTC 1 cut(s) 494
PvuII CAGCTG 2 cut(s) 653, 721
RsaI GTAC 3 cut(s) 319, 1201, 1454
RsaNI GTAC 3 cut(s) 318, 1200, 1453
RseI CAYNNNNRTG 3 cut(s) 341, 808, 854
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 5 cut(s) 815, 900, 986, 1175, 1674
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 223, 1348
SchI GAGTC 3 cut(s) 353, 1433, 1594
ScrFI CCNGG 6 cut(s) 101, 453, 1185, 1197, 1356, 1424
SduI GDGCHC 1 cut(s) 1126
SfaNI GCATC 3 cut(s) 399, 827, 1544
SfcI CTRYAG 1 cut(s) 1104
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 2 cut(s) 615, 793
SinI GGWCC 1 cut(s) 1348
SlaI CTCGAG 1 cut(s) 231
SmiMI CAYNNNNRTG 3 cut(s) 341, 808, 854
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SspI AATATT 2 cut(s) 115, 568
SspMI CTAG 4 cut(s) 227, 576, 687, 1170
StyD4I CCNGG 6 cut(s) 99, 451, 1183, 1195, 1354, 1422
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 886, 1660, 1693
TaqI TCGA 8 cut(s) 232, 288, 437, 615, 793, 961, 1282, 1370
TfiI GAWTC 8 cut(s) 381, 473, 612, 1277, 1284, 1580, 1696, 1742
Tru1I TTAA 5 cut(s) 815, 900, 986, 1175, 1674
Tru9I TTAA 5 cut(s) 815, 900, 986, 1175, 1674
TscAI CASTG 5 cut(s) 133, 187, 254, 468, 912
TseFI GTSAC 2 cut(s) 251, 1156
Tsp45I GTSAC 2 cut(s) 251, 1156
TspDTI ATGAA 5 cut(s) 188, 518, 650, 1323, 1593
TspGWI ACGGA 1 cut(s) 1649
TspRI CASTG 5 cut(s) 133, 187, 254, 468, 912
Tth111I GACNNNGTC 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 1348
XapI RAATTY 4 cut(s) 272, 302, 404, 988
XceI RCATGY 2 cut(s) 53, 866
XhoI CTCGAG 1 cut(s) 231
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 4 cut(s) 227, 576, 687, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.