Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015019

Physical Location & Seq

Genomic Coordinates Forward (+)

15124176 .. 15128794

Gene Structure 4619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22090.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGATCTGCTCTTTGAAACAATCGCCGGCGATCACGAGCGGCTGTGATGTTTACTTGCGGCCAAGAACTCTGCCGGCGGTGCAGGGATCTTTGCATTTGCCGTCTCTTCCTTTGAAGAACTTCCAAAGGTCTGTGCTTTCGGTGCAGAAGCCTCTGCACATCTCTAGTTTGGAGAGCTTTGGATCACTCAAGAGCAGAACGAGTTTGATCAAATGTCAGGCTTACGAGGCAGATCAGTCAGAGCCGATCGAGCTTCCAAAGGTGGATACTCGATCAGAGGCGGCCAAGAAGTTGAAGATCGGGGTGTATTTTGCTATGTGGTGGGCTCTGAATGTGGTTTTCAATATTTACAACAAGAAGGTGTTGAATGCCTACCCTTTTCCTTGGTTGACCTCCACTCTGTCTTTGGCATGCGGGTCTTTGATCATGTTGGTGTCTTGGGCTACCAGGATTGCTGAGGCGCCCAAGACTGATATGGATTTTTGGAAGGCTCTGTTTCCTGTTGCTGTGGCACATACCATTGGACATGTAGCTGCAACTGTTAGTATGTCTAAGGTTGCAGTTTCCTTCACCCATATCATCAAGAGTGGAGAGCCTGCTTTTAGTGTATTGGTTTCAAGGTTCCTGCTGGGCGAGTCTTTCCCTACTTCTGTCTACCTCTCCCTTCTTCCAATCATTGGTGGTTGTGGTCTTGCTGCCTTGACAGAGCTTAACTTCAACATGATTGGATTTATGGGGGCCATGATATCAAACTTGGCATTTGTCTTCCGCAACATATTTTCAAAGAAGGGCATGAAAGGGAAATCTGTTAGCGGAATGAATTATTATGCTTGTCTATCTATCATGTCTCTTGTAATTCTCACACCATTTGCAATAGCGGTGGAGGGACCCAAGATGTGGGCAGCTGGATTTGAAACAGCCATGGCGCAAATTGGCCCCAACTTGATATGGTGGATGGCAGCCCAGAGTGTCTTCTATCATCTCTACAACCAGGTGTCATACATGTCATTAGATGAGATATCTCCCTTGACATTCAGCATAGGGAACACCATGAAACGTATATCTGTCATTGTATCATCCATCATCATATTCCACACACCTGTCCAGCCTGTCAATGCTCTTGGAGCTGCTATTGCAATTTTCGGAACCTTCTTATATTCCCAGGCAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

392

Amino Acids

42.8

Weight (kDa)

9.45

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	98 - 387	2.3e-116	Triose-phosphate Transporter family
EamA	PF00892	105 - 231	8e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54800
fragaria_vesca	FvH4_3g22090 FvH4_3g22090
malus_domestica	MD03G1208900.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1 Prupe.4G207800_v2.0.a1
pyrus_communis	pycom03g15790 pycom11g19730
rosa_chinensis	RchiOBHm_Chr5g0037901
rosa_laevigata	RLG00000033821
rosa_multiflora	Rmu_sc0005416.1_g000038
rosa_roxburghii	Rroxscaffold_1G00043000
rosa_rugosa	Rorug05G0168800
rosa_samantha	Rh5AG257500 Rh5BG260100
rosa_wichuraiana	Rw5G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccB7I	CCANNNNNTGG	2 cut(s)	677, 897
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	8 cut(s)	39, 58, 77, 281, 414, 769, 813, 878
AclWI	GGATC	2 cut(s)	94, 190
AcoI	YGGCCR	2 cut(s)	59, 282
AcyI	GRCGYC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	677, 897
AflIII	ACRYGT	2 cut(s)	526, 1002
AgsI	TTSAA	9 cut(s)	16, 115, 295, 343, 367, 618, 718, 783, 914
AjnI	CCWGG	3 cut(s)	446, 990, 1161
AluBI	AGCT	7 cut(s)	177, 253, 533, 709, 905, 1127, 1171
AluI	AGCT	7 cut(s)	177, 253, 533, 709, 905, 1127, 1171
Alw26I	GTCTC	2 cut(s)	108, 852
AlwI	GGATC	2 cut(s)	94, 190
AoxI	GGCC	4 cut(s)	59, 282, 738, 934
ApeKI	GCWGC	5 cut(s)	533, 695, 902, 959, 1127
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	463, 928
AspS9I	GGNCC	3 cut(s)	738, 887, 935
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	887
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	757, 964
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
BccI	CCATC	2 cut(s)	949, 1088
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	3 cut(s)	448, 992, 1163
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	2 cut(s)	207, 423
BcoDI	GTCTC	2 cut(s)	108, 852
BfaI	CTAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	8 cut(s)	40, 59, 282, 534, 696, 903, 960, 1128
BlsI	GCNGC	8 cut(s)	41, 60, 283, 535, 697, 904, 961, 1129
Bme1390I	CCNGG	3 cut(s)	448, 992, 1163
Bme18I	GGWCC	1 cut(s)	887
BmgT120I	GGNCC	3 cut(s)	738, 887, 935
BmiI	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
BmrFI	CCNGG	3 cut(s)	448, 992, 1163
BpiI	GAAGAC	2 cut(s)	757, 964
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	383, 921, 1161
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 897
Bse118I	RCCGGY	2 cut(s)	25, 73
BseBI	CCWGG	3 cut(s)	448, 992, 1163
BseDI	CCNNGG	3 cut(s)	383, 921, 1161
BseGI	GGATG	2 cut(s)	960, 1076
BseLI	CCNNNNNNNGG	2 cut(s)	677, 897
BseMII	CTCAG	1 cut(s)	447
BseXI	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	3 cut(s)	101, 140, 164
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	61, 284, 740, 936
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	26, 74
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	2 cut(s)	677, 897
BsmAI	GTCTC	2 cut(s)	108, 852
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	900
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	61, 284, 740, 936
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	8 cut(s)	39, 58, 77, 281, 414, 769, 813, 878
BspANI	GGCC	4 cut(s)	61, 284, 740, 936
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
BspPI	GGATC	2 cut(s)	94, 190
BspT107I	GGYRCC	1 cut(s)	460
BsrBI	CCGCTC	1 cut(s)	39
BsrFI	RCCGGY	2 cut(s)	25, 73
BssAI	RCCGGY	2 cut(s)	25, 73
BssECI	CCNNGG	3 cut(s)	383, 921, 1161
BssNI	GRCGYC	1 cut(s)	461
BssSI	CACGAG	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	383, 921
Bst2BI	CACGAG	1 cut(s)	34
Bst2UI	CCWGG	3 cut(s)	448, 992, 1163
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	461
BstC8I	GCNNGC	4 cut(s)	27, 75, 412, 597
BstDEI	CTNAG	2 cut(s)	456, 552
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	2 cut(s)	960, 1076
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	463, 928
BstMAI	GTCTC	2 cut(s)	108, 852
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 142, 227, 250, 1124, 1133
BstNI	CCWGG	3 cut(s)	448, 992, 1163
BstNSI	RCATGY	3 cut(s)	414, 530, 1006
BstSCI	CCNGG	3 cut(s)	446, 990, 1161
BstV1I	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
BstV2I	GAAGAC	2 cut(s)	757, 964
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	61, 284, 740, 936
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	960, 1076
Cac8I	GCNNGC	4 cut(s)	27, 75, 412, 597
CfoI	GCGC	2 cut(s)	463, 928
Cfr10I	RCCGGY	2 cut(s)	25, 73
Cfr13I	GGNCC	3 cut(s)	738, 887, 935
CsiI	ACCWGGT	1 cut(s)	990
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
DdeI	CTNAG	2 cut(s)	456, 552
DinI	GGCGCC	1 cut(s)	462
EaeI	YGGCCR	2 cut(s)	59, 282
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	383, 921
Eco24I	GRGCYC	1 cut(s)	328
Eco32I	GATATC	2 cut(s)	747, 1020
Eco47I	GGWCC	1 cut(s)	887
EcoO109I	RGGNCCY	1 cut(s)	887
EcoRII	CCWGG	3 cut(s)	446, 990, 1161
EcoRV	GATATC	2 cut(s)	747, 1020
EcoT14I	CCWWGG	2 cut(s)	383, 921
EcoT38I	GRGCYC	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	383, 921
Esp3I	CGTCTC	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	900
FauI	CCCGC	1 cut(s)	407
FbaI	TGATCA	2 cut(s)	207, 423
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	8 cut(s)	40, 59, 282, 534, 696, 903, 960, 1128
FokI	GGATG	2 cut(s)	967, 1063
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	8 cut(s)	40, 59, 282, 534, 696, 903, 960, 1128
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	2 cut(s)	462, 927
GluI	GCNGC	8 cut(s)	40, 59, 282, 534, 696, 903, 960, 1128
GsaI	CCCAGC	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	4 cut(s)	61, 284, 740, 936
HapII	CCGG	2 cut(s)	26, 74
HhaI	GCGC	2 cut(s)	463, 928
Hin1I	GRCGYC	1 cut(s)	461
Hin6I	GCGC	2 cut(s)	461, 926
HinP1I	GCGC	2 cut(s)	461, 926
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	635
HpaII	CCGG	2 cut(s)	26, 74
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	3 cut(s)	52, 390, 655
Hpy188I	TCNGA	4 cut(s)	241, 277, 330, 1145
Hpy188III	TCNNGA	3 cut(s)	34, 190, 583
Hpy8I	GTNNAC	3 cut(s)	52, 390, 655
HpyAV	CCTTC	6 cut(s)	352, 481, 577, 674, 781, 1159
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	1 cut(s)	1057
HpyCH4V	TGCA	8 cut(s)	82, 94, 145, 157, 536, 560, 872, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 142, 227, 250, 1124, 1133
HpyF3I	CTNAG	2 cut(s)	456, 552
HpySE526I	ACGT	1 cut(s)	1057
Hsp92I	GRCGYC	1 cut(s)	461
HspAI	GCGC	2 cut(s)	461, 926
KasI	GGCGCC	1 cut(s)	460
KflI	GGGWCCC	1 cut(s)	887
KroI	GCCGGC	2 cut(s)	25, 73
KroNI	GCCGGC	2 cut(s)	27, 75
Ksp22I	TGATCA	2 cut(s)	207, 423
LmnI	GCTCC	1 cut(s)	1124
Lsp1109I	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
MabI	ACCWGGT	1 cut(s)	990
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	1057
MbiI	CCGCTC	1 cut(s)	39
MboII	GAAGA	6 cut(s)	98, 127, 307, 659, 757, 964
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	4 cut(s)	820, 855, 930, 1137
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	644
MnlI	CCTC	7 cut(s)	162, 220, 271, 403, 451, 668, 877
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	2 cut(s)	25, 73
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	711
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	2 cut(s)	26, 74
MspR9I	CCNGG	3 cut(s)	448, 992, 1163
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	3 cut(s)	448, 992, 1163
MwoI	GCNNNNNNNGC	6 cut(s)	79, 142, 227, 250, 1124, 1133
NaeI	GCCGGC	2 cut(s)	27, 75
NarI	GGCGCC	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	921
NgoMIV	GCCGGC	2 cut(s)	25, 73
NlaIV	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
NspI	RCATGY	3 cut(s)	414, 530, 1006
PaeI	GCATGC	1 cut(s)	414
PciI	ACATGT	2 cut(s)	526, 1002
PctI	GAATGC	1 cut(s)	373
PdiI	GCCGGC	2 cut(s)	27, 75
PdmI	GAANNNNTTC	1 cut(s)	119
PflMI	CCANNNNNTGG	2 cut(s)	677, 897
PkrI	GCNGC	8 cut(s)	41, 60, 283, 535, 697, 904, 961, 1129
Ple19I	CGATCG	1 cut(s)	249
PleI	GAGTC	1 cut(s)	643
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	643
PpuMI	RGGWCCY	1 cut(s)	887
PscI	ACATGT	2 cut(s)	526, 1002
Psp5II	RGGWCCY	1 cut(s)	887
Psp6I	CCWGG	3 cut(s)	446, 990, 1161
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	3 cut(s)	446, 990, 1161
PspN4I	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
PspPI	GGNCC	3 cut(s)	738, 887, 935
PspPPI	RGGWCCY	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	86
PvuI	CGATCG	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	905
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	8 cut(s)	40, 59, 282, 534, 696, 903, 960, 1128
Sau96I	GGNCC	3 cut(s)	738, 887, 935
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	3 cut(s)	448, 992, 1163
SduI	GDGCHC	1 cut(s)	328
SexAI	ACCWGGT	1 cut(s)	990
SfoI	GGCGCC	1 cut(s)	462
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	4 cut(s)	820, 855, 930, 1137
SsiI	CCGC	8 cut(s)	39, 58, 77, 281, 414, 769, 813, 878
SspDI	GGCGCC	1 cut(s)	460
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	446, 990, 1161
StyI	CCWWGG	2 cut(s)	383, 921
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	1 cut(s)	1060
TaqI	TCGA	2 cut(s)	249, 271
TasI	AATT	4 cut(s)	820, 855, 930, 1137
TauI	GCSGC	3 cut(s)	42, 61, 284
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TseI	GCWGC	5 cut(s)	533, 695, 902, 959, 1127
TspDTI	ATGAA	3 cut(s)	809, 833, 1067
Van91I	CCANNNNNTGG	2 cut(s)	677, 897
VpaK11BI	GGWCC	1 cut(s)	887
XceI	RCATGY	3 cut(s)	414, 530, 1006
XcmI	CCANNNNNNNNNTGG	2 cut(s)	403, 472
XmiI	GTMKAC	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.