Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015019

Physical Location & Seq

Genomic Coordinates Reverse (-)

15652792 .. 15673235

Gene Structure 20444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0168800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6306 bp

ATGCCGCTCTTCGTCTCCGACGAGGAGTTCTCCGGCCACCGAGACGACGTCGCTTGGGTGGCGGAGAAGGCCGACGCGTTCATCCGGAACCTCTACACCGAGCTTGACACCGTCAAGGCGCAGAACGACGCCGCTTCGATCACCGCCGAGCAGACCTGCTCTCTCCTCGAGCAGAAGTACCTCTCCCTCTCCGATGAACACTCCAAGCTCGAGTCCGAACTCGCGCAGCTCAAGTCCTCGTTCGACGAGCGCCTCTCCGAGCTCGCCGAAGTGCAGTCTCAGAAGTACCAGCTCAATTTACAATCCATTACTAAAGATAGTGAGATAGAGATGTTGAAGACGGAGGTGTCAGAGCTGCACAAATCAAAGAGGCAGTTAATGGAGATAGTGGAGCAAAAGGATGAGGATATTAGTGCAAAGAATTGCACCATCCAGTCTTATCTCGAGAAGATTGTCAAGTCGGCTGAGAATGCTGCCCAGAGGGAGGCCCGATTAAGTGAAGCTGAGGCAGAGTTAGCACGCACCAAGGATTCATGCACTCATCTTTCACAGGAGAAAGAACTTATCGAGAGGCATAATGTCTGGCTTAATGATGAGTTAGCAGCCAAAGTTGACAGTCTCATTAAGCTGCGTAGAACGCATGCCGATGTTGAGGCAGAGATGTCTTTTAAGCTTTCAGATGTTGAACGGAAATTCAATGACTGTTCTAGCTCCTTAAATTGGAACAAGGAAAGAGTGAGGGAACTAGAAGCAAAGCTGACATCCTTGCAGGAGGAACTACGCTTATCGAAAGATACTGCAGCAGCTAATGAAGAGAGATCAAATGCCGAACTCTCAACGACAAATAAGCTTGTTGAACTATATAAGGAAAGTTCAGAGGAATGGTCCAAAAAGGCAGGAGAGCTTGAGGGTGTGATCAAAGCTCTGGAGACGCATTTGAGTCAAGTTGAAAATGATTACAAGGAGAGACTTGAAAGGGAAGTGTCTGCAAGAAATCAATTTGAAAAGGAGGCTGCAGATCTGAAGACAAAACTTGAGAAGTGCGAAGCAGAAATTGAAACTAGCAGGAAAGCAAATGAGCTGAGTCTTCTCCCACTTAATAGTTCTAGTCAGGAAATGTGGTTGAATTCATTAGAATCTACTGACATGGCTGAGGTTGATCGTGCGGTGGTGCCGAAGATTCCTGTTGGTGTTTCAGGAACAGCATTAGCAGCTTCCCTTTTACGTGACGGGTGGAGTCTTGCAAAAATGTATGCGAAGTACCAAGAGGCGGTCGATGCCTTGCGTCATGAGCAGTTGGGAAGGAAGGAATCTGAGGCAATCTTGCAACGGGTTCTATATGAAATAGAAGAGAAAGCTGAAGTCATCATGGATGAAAGAGTGGAACATGAGAGAATGGCTGAGGCATATTCTATGATCAACCAGAAGTTGCAGGACTCAGTTTCTGAACAAGAATACTTGGAGAGAATGATCACGGAGTTGAAGGCTGACATAAGGAGGCATGAACGTGACTACTCCTTTGCTCAAAAAGAGATTGCTGATCTTCAGAGAGAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCTGATGCTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGTCGCAATGTACAAAAGGTTGTATGAAGAGGAGCATAAACTTCGTTCGTCTAGTCCCCATTTAATAGAGGCTGCTCCAGAGGAAAGAAGAAGTGATGTTAGGTATCTACTTGAGAGTTCTCAGGAAGCTAGCAGAAAGGCCCAAGACCATGCTGCAGAACGAGTGAAATGTCTGGAAGAAGATCTAGCGAAGATCAGGAGTGAGATAATATCTTTGCGGTCAGAGCGTGACAAATTCGCTTCAGAAGCGAATATTGCTAGAGAGAAACTTGAGAGCTTTATGAAAGAATTTGAGCTTCAGAGGAACGAAACAAATGGTGTATTAGCAAGGAACATTGAGTTCTCTCAGTTAATAGTTGACTACCAGCGGAAGCTGCGTGAAGGTTCTGAGTCCGTGCAAACTGCTGAGGAGCTTTCTAGGAAGTTGACTATGGAGGTGTCTCTTTTGAAGCAAGAGAAGGAAATGCTGCAACATGCTGAGAAGAGAGCTTCGGATGAAGTTCGTAATTTGTCTGAGAGGGTTTATAGACTGCAGGCTAGTTTGGACACTATTCAGAGTACCCAGCAAGTTCGCGAGGAGGCAAGAGCTGCCGAGAGGAGAAAACAAGAAGAGTATACAGAACAAAAAGAGAGGGAGTGGGCTGATGCTAAAAGAGAATTGCAAGAAGAGAAACATAATGCTCTCACTCTTGCACTTGACCGCGATCAGACCATAAAAAATGCCGTCAAACAGGTTGAAGAAATGAGAAAAGATTTGTCTAATGCACTTCATGCTGCTGCATCTGCTGAGAGTAGAGCTGCTGTAGCTGAGGCCAGACTGTCTGATCTGGAGAAAAAGAGTTCATCCTCAGATATCCAGGTTGTTGAGATTGACGGTGGGAGTGGATCTGCTTCTTTGACAGGCAATGAGGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGCTGAAAAACTGAAGAAGTCTCGAGATGCTGAATTACTCTCTTTGAGAGAGAGGGTCTCTGAACTTGAAAATGAGATTATGTTGAAGTCCCAAGAAGTGGCTTCTGCAGCGGCAGGGAAGGAAGAAGCTCTATTCTCTGCTTTAGCAGAAATTTCAAGCCTAAAGGAAGAAACCACAGCAAAAATTTCTCAAACTGCTGCCCTGGAGATTCAGGTTTCTACTTTGAAGGAAGACTTGGAGAAAGAACATCAGCGATGGCGCACTGCACAGGCTAATTATGAAAGACAGGTCATCCTTCAGTCAGAGACAATACAGGAGTTGACTAAAACATCACAAGCTTTGGCTGTGCTTCAGCAGGAAGCATCAGAGTTGCGTAAATTGGATGCTGCACTCAAAAGTGAAAATGATGAACTGAAGTCCAGATGGGAAGTTGATAAGGCAATGTTAGAGGAATCCGCTAGTATTGCTGAGAAGAAGTACAATGAAATCAATGAACAGAATAAAATACTGCATAGTCAACTGGAGGCTGTGCACATTCAATTGGCCGAGAGAGATCGTGGTTCATTTGGAACAACTTCTGGAAGCACTGGAGCAGATACTTCAGGTGATGCTGGTTTACAAACTGTGATAAGTTATCTTCGACGTACAAAAGAGATTGCAGAGACAGAGATATCCTTATTGAAACAAGAAAAACTACGATTGCAATCACAACTTGAGAGTGCCCTCAAGGCTTCAGAAACAGCCCAAGCATCACTTCGTTCTGAGCGTGCAAGTTCAAGGTCAATGTTGTTCTCAGAGGAGGAACTAAAATCCTTACAACTACAGGTTAGAGAAATAAACTTGCTCCGCGAAAGTAATATCCAACTGAGAGAAGAAAATAAGCACAATTTTGAGGAATGCCAGAAATTGCATGAAATATCACAAAAGGCTAGTGTTGAGCGTCACAACCTAGAGAGGCTGTTAAGGGAGAGACAGATTGAGGTGGAGGCATGTAAAAAAGACATTGAAATGCAAAAGATGGAGAAAGATCACTTGGAAAAGAGGCTTAGTGAGTTACTTGAAAGGTATAGAAATATAGATGTTGAAGATTATGATCGCACAAAGGCTGAACATCAGCAGATGCAGGTAACATTGAAGGAGAAGGATTCCCATATAGAAGAAGTCAAGAAACTTCTTTCGGAGAAGCTGGAGATTGTTTTGTCTTTAGAAAAAGATCTTGCAAACTTCAGATCGGAACTGACTGAGAGGGATAGGAGGATAAATGACATGTTGCCAGCAGAGGCAATTTTAAGATCAGATGTGGAGAAGCAAAGAAGGATTGGCCTTCAGTTTAAGAGGAAGTATGAGACATGCTTAAAGGAAAAGGAGGATCTTCAAAGACAAAAGGAGGATCTTCAAAGGCAAAAGGACGACCTTCAAAGGCAATGCGACGACCTTCAAAGGCAAAGGGATGATCTTATAAGGCAGTTGGAGGAAAAACAAGCGAAACGATCTTCTGGTGATCCTGCTGGGGAGCATGCCCTTAAAGAAGAGAAAGACCAAAAAATTCAGACACTGCAAAAAATGATGGAGAGGCAGAAAGAGGCAATGGAGAGGCAGAAAGAGGACCTACGAAATGAGAAAGCAAACCGCAAGAAGACTGAGAATGCTTTATTGGATTCTCTTAATAAAATTGAGCAGGACAAAATAATCTTCAAGAATGAGCTGGAGAAGCATAAGCTGGCTGTCAGGCAGCTTTCAGATGAACAGGAAAAGCTGAAGCATGCAAAAGACGGTCTTCCTGAGGGTACCTCAGTTGTTCAACATCTTTCTGGAGCCATACTGGATGATCGAGCCTCTGCTTACTTCTTGGTTTGTGAAAATTATGAAAGGGTAGCACATTCAACTTTGAATGAGCTTGGAGCTGGTGGTGTTCCTGCAGACACTCCAGTTGCCGATGCTTCATTAGCTGCTACTTCTGCTCCTGGTCCAGCAGCCACCCTTGCATCCTCAATGACTCCTACGGCAGTTATGCCATCCAAAGCAGCAGATGAAACTGAAAGGAGGGTCACTTTTCCCAAAAGAAACGTTGAACCTCGTAAAACAGGGAGGAAATTGGTTCGGCCCCGTCTTGTAAGACCTGAGGAACCACAAGGTGATGTAGAGATGTCAGAGACGGAAGGGGCTCAGACTTTGAATAAACATGCAGCTTCCACTGACGCCGAAGTTCAGGGCGTTGCTACTTTGACACAACCACTGTTTCGAAAACGTCAAGCTTCTTCATCTCAGTTTGAGTCTCACGAGGAATCAATAAACCAAGGGGAAACTGGTCCTGATGTGGCAGCACCTGTGTCAAAGAAGCCCAAAGGTTCAGAATCTCCTCAAAAGAGTGAAGGGCAAGCACCTGCTTCATTGGAAAATATTGGCAATGTTCCAGCCACAGAAGAAGCTTCTAATGCTGATATTCCTCAAGGTTCAAATGAGGAAGGTGCTGTTGATGCTGAGAAGGAAGAGATTGAGAATACCGCGGTGAAGGTTGAAGAGCCAATTGAACAACAATTTGATGGTTCAAGTCAACCTGAATCACAACATGACAAGAATAGTGTTTTGGAAGAAGATGTGGATGGATCAGATGTTAAAGAGATGGTGCCCGATGATGGAGCAAAGGATAATCAGGTGGAGCCTGACAACCGACAGTCCAGTGGAGTTGGGGGAGACAGAGAAGAGGGAGAGCTTCCACCTGATGTATCAGACCTTGAAGGTGGTGATACAACGATGGGCAGTCCTGGTATAGAGGAAGGTCAGCCTGAGCCTATTACAACACCCAGAGCTTCACCATCTAGGGCTGATGATGAAGATCTTGCTGGCGCTTCTGTTGTGGATGTTAGTGAGGTGAATTCTCCAGAAGTTCTTAATGAAGAGAAAAATAATGAAGTTGATGTACCTGAAGAGACAGCTGAAGCCTCTGATAAGTCAAATGATGGTATCGATCAAACTGCAATGGAGACTGACCTCACTGTTGAAGCTGCCTCTGTAGCTGGTGATGCCTCTATAACGGCTGAGAGTACCTCTGCAAGTACTACTACAGAGGCTAGTGGTTCAAGACAGGCCAGTGCTAGTGTCACCACTGAAGCAGAAGAGGCAAAGCAGGTTTCTCCTTCCTCTACCACCATAAATATAACTGAACAAGCTAGGCGGAATGCTGAGCTAAGACAGCGTGGACAGCAGGGACGACAACCAATTGTTGTACCTCCGACCCCAATTAGAGGTCGTGGAAGACCAGCACAGCGTGGACGTGCACGTGCTGTGCGTCGTCCTGTCCGTGGACGTGGCCCCACATCTGGTGATCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

2101

Amino Acids

237.13

Weight (kDa)

5.01

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoprot-TPR	PF25481	170 - 249	1.4e-26	Nucleoprotein TPR-like domain
TPR	PF25785	491 - 593	5.1e-29	Nucleoprotein TPR-like domain
TPR_MLP1_2	PF07926	1040 - 1167	2.6e-25	TPR/MLP1/MLP2-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54800
fragaria_vesca	FvH4_3g22090 FvH4_3g22090
malus_domestica	MD03G1208900.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1 Prupe.4G207800_v2.0.a1
pyrus_communis	pycom03g15790 pycom11g19730
rosa_chinensis	RchiOBHm_Chr5g0037901
rosa_laevigata	RLG00000033821
rosa_multiflora	Rmu_sc0005416.1_g000038
rosa_roxburghii	Rroxscaffold_1G00043000
rosa_rugosa	Rorug05G0168800
rosa_samantha	Rh5AG257500 Rh5BG260100
rosa_wichuraiana	Rw5G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4430
AarI	CACCTGC	1 cut(s)	5362
AasI	GACNNNNNNGTC	1 cut(s)	346
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	4 cut(s)	164, 4084, 5362, 6088
Acc65I	GGTACC	1 cut(s)	4757
AccB1I	GGYRCC	3 cut(s)	1171, 4757, 5596
AccB7I	CCANNNNNTGG	1 cut(s)	3067
AccBSI	CCGCTC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	2516
AccII	CGCG	6 cut(s)	77, 224, 2475, 2604, 3819, 5477
AccIII	TCCGGA	1 cut(s)	84
AclI	AACGTT	1 cut(s)	5037
AclWI	GGATC	5 cut(s)	2794, 4347, 4368, 4466, 5584
AcoI	YGGCCR	2 cut(s)	34, 3513
AcvI	CACGTG	1 cut(s)	6251
AcyI	GRCGYC	3 cut(s)	48, 129, 5169
AdeI	CACNNNGTG	2 cut(s)	5105, 6239
AfiI	CCNNNNNNNGG	9 cut(s)	484, 720, 1270, 1731, 3067, 5606, 6215, 6272, 6290
AflIII	ACRYGT	2 cut(s)	75, 4236
AjiI	CACGTC	2 cut(s)	6245, 6278
AjnI	CCWGG	4 cut(s)	2757, 3171, 4933, 5734
AloI	GAACNNNNNNTCC	2 cut(s)	1766, 1798
Alw21I	GWGCWC	5 cut(s)	264, 1644, 1809, 3504, 6250
Alw44I	GTGCAC	3 cut(s)	1640, 3500, 6246
AlwI	GGATC	5 cut(s)	2794, 4347, 4368, 4466, 5584
AlwNI	CAGNNNCTG	3 cut(s)	1445, 4525, 5297
Ama87I	CYCGRG	4 cut(s)	167, 209, 443, 2991
Aor13HI	TCCGGA	1 cut(s)	84
ApaLI	GTGCAC	3 cut(s)	1640, 3500, 6246
ArsI	GACNNNNNNTTYG	2 cut(s)	1502, 1534
Asp700I	GAANNNNTTC	2 cut(s)	1890, 3544
Asp718I	GGTACC	1 cut(s)	4757
AspLEI	GCGC	5 cut(s)	121, 226, 252, 3231, 5819
AspS9I	GGNCC	8 cut(s)	487, 885, 2041, 4576, 4937, 5073, 5279, 6281
AsuII	TTCGAA	1 cut(s)	5212
AsuNHI	GCTAGC	1 cut(s)	2030
AvaI	CYCGRG	4 cut(s)	167, 209, 443, 2991
AvaII	GGWCC	4 cut(s)	885, 4576, 4937, 5279
AxyI	CCTNAGG	2 cut(s)	4752, 5091
BaeGI	GKGCMC	5 cut(s)	1644, 3504, 3694, 5601, 6250
BaeI	ACNNNNGTAYC	2 cut(s)	4749, 4782
BanI	GGYRCC	3 cut(s)	1171, 4757, 5596
BanII	GRGCYC	3 cut(s)	264, 1809, 5137
BarI	GAAGNNNNNNTAC	2 cut(s)	5874, 5906
BauI	CACGAG	1 cut(s)	5249
BbrPI	CACGTG	1 cut(s)	6251
BbsI	GAAGAC	7 cut(s)	344, 1031, 1079, 3207, 4613, 4739, 6232
Bbv12I	GWGCWC	5 cut(s)	264, 1644, 1809, 3504, 6250
BbvCI	CCTCAGC	5 cut(s)	504, 1152, 1401, 2307, 2709
BceAI	ACGGC	3 cut(s)	2609, 4989, 6021
BcgI	CGANNNNNNTGC	4 cut(s)	1925, 1959, 5927, 5961
BciT130I	CCWGG	4 cut(s)	2759, 3173, 4935, 5736
BclI	TGATCA	4 cut(s)	915, 1416, 1470, 6295
BfoI	RGCGCY	2 cut(s)	253, 5820
BfuAI	ACCTGC	4 cut(s)	164, 4084, 5362, 6088
BglI	GCCNNNNNGGC	1 cut(s)	3698
BglII	AGATCT	4 cut(s)	1018, 2083, 4183, 5806
BlpI	GCTNAGC	1 cut(s)	6153
BmcAI	AGTACT	1 cut(s)	6028
Bme1390I	CCNGG	4 cut(s)	2759, 3173, 4935, 5736
Bme18I	GGWCC	4 cut(s)	885, 4576, 4937, 5279
BmeT110I	CYCGRG	4 cut(s)	167, 209, 443, 2991
BmgBI	CACGTC	2 cut(s)	6245, 6278
BmgT120I	GGNCC	8 cut(s)	487, 885, 2041, 4576, 4937, 5073, 5279, 6281
BmiI	GGNNCC	9 cut(s)	89, 1173, 4759, 4786, 5075, 5097, 5598, 5631, 6283
BmrFI	CCNGG	4 cut(s)	2759, 3173, 4935, 5736
BmtI	GCTAGC	1 cut(s)	2034
BpiI	GAAGAC	7 cut(s)	344, 1031, 1079, 3207, 4613, 4739, 6232
Bpu10I	CCTNAGC	8 cut(s)	504, 1152, 1401, 1730, 2307, 2709, 2910, 5757
Bpu1102I	GCTNAGC	1 cut(s)	6153
Bpu14I	TTCGAA	1 cut(s)	5212
BpuEI	CTTGAG	9 cut(s)	215, 926, 1055, 1793, 2033, 2192, 3680, 3704, 5403
Bsa29I	ATCGAT	1 cut(s)	5937
BsaAI	YACGTR	3 cut(s)	1226, 2828, 6251
BsaBI	GATNNNNATC	3 cut(s)	3673, 4062, 5805
BsaHI	GRCGYC	3 cut(s)	48, 129, 5169
BsaI	GGTCTC	1 cut(s)	3031
BsaJI	CCNNGG	5 cut(s)	525, 3171, 5266, 5475, 6271
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	4915, 4945
Bsc4I	CCNNNNNNNGG	9 cut(s)	484, 720, 1270, 1731, 3067, 5606, 6215, 6272, 6290
Bse1I	ACTGG	8 cut(s)	433, 3495, 3562, 4797, 4898, 5281, 5649, 6060
Bse21I	CCTNAGG	2 cut(s)	4752, 5091
Bse3DI	GCAATG	7 cut(s)	1914, 2812, 3417, 4400, 4563, 5383, 5955
Bse8I	GATNNNNATC	3 cut(s)	3673, 4062, 5805
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	4 cut(s)	2759, 3173, 4935, 5736
BseCI	ATCGAT	1 cut(s)	5937
BseDI	CCNNGG	5 cut(s)	525, 3171, 5266, 5475, 6271
BseJI	GATNNNNATC	3 cut(s)	3673, 4062, 5805
BseLI	CCNNNNNNNGG	9 cut(s)	484, 720, 1270, 1731, 3067, 5606, 6215, 6272, 6290
BseMI	GCAATG	7 cut(s)	1914, 2812, 3417, 4400, 4563, 5383, 5955
BseNI	ACTGG	8 cut(s)	433, 3495, 3562, 4797, 4898, 5281, 5649, 6060
BseRI	GAGGAG	8 cut(s)	38, 155, 1946, 2324, 2492, 2512, 3782, 5319
BseSI	GKGCMC	5 cut(s)	1644, 3504, 3694, 5601, 6250
BseYI	CCCAGC	3 cut(s)	1725, 2463, 4478
BsgI	GTGCAG	4 cut(s)	293, 341, 3219, 3342
Bsh1236I	CGCG	6 cut(s)	77, 224, 2475, 2604, 3819, 5477
Bsh1285I	CGRYCG	1 cut(s)	1275
BshNI	GGYRCC	3 cut(s)	1171, 4757, 5596
BshVI	ATCGAT	1 cut(s)	5937
BsiEI	CGRYCG	1 cut(s)	1275
BsiHKAI	GWGCWC	5 cut(s)	264, 1644, 1809, 3504, 6250
BsiHKCI	CYCGRG	4 cut(s)	167, 209, 443, 2991
BsiSI	CCGG	2 cut(s)	33, 85
BslFI	GGGAC	3 cut(s)	1941, 3043, 6192
BslI	CCNNNNNNNGG	9 cut(s)	484, 720, 1270, 1731, 3067, 5606, 6215, 6272, 6290
BsmBI	CGTCTC	4 cut(s)	19, 36, 923, 5117
BsmFI	GGGAC	3 cut(s)	1941, 3043, 6192
BsmI	GAATGC	5 cut(s)	475, 1726, 3872, 4621, 6154
Bso31I	GGTCTC	1 cut(s)	3031
BsoBI	CYCGRG	4 cut(s)	167, 209, 443, 2991
Bsp119I	TTCGAA	1 cut(s)	5212
Bsp1286I	GDGCHC	8 cut(s)	264, 1644, 1809, 3504, 3694, 5137, 5601, 6250
Bsp13I	TCCGGA	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	1911
Bsp1720I	GCTNAGC	1 cut(s)	6153
Bsp68I	TCGCGA	1 cut(s)	2475
BspDI	ATCGAT	1 cut(s)	5937
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	6 cut(s)	77, 224, 2475, 2604, 3819, 5477
BspHI	TCATGA	2 cut(s)	1288, 1612
BspLI	GGNNCC	9 cut(s)	89, 1173, 4759, 4786, 5075, 5097, 5598, 5631, 6283
BspMAI	CTGCAG	6 cut(s)	802, 1018, 2059, 2436, 3079, 4891
BspMI	ACCTGC	4 cut(s)	164, 4084, 5362, 6088
BspOI	GCTAGC	1 cut(s)	2034
BspPI	GGATC	5 cut(s)	2794, 4347, 4368, 4466, 5584
BspQI	GCTCTTC	3 cut(s)	14, 1860, 5484
BspT104I	TTCGAA	1 cut(s)	5212
BspT107I	GGYRCC	3 cut(s)	1171, 4757, 5596
BspTNI	GGTCTC	1 cut(s)	3031
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	7 cut(s)	1914, 2812, 3417, 4400, 4563, 5383, 5955
BsrGI	TGTACA	1 cut(s)	1911
BsrI	ACTGG	8 cut(s)	433, 3495, 3562, 4797, 4898, 5281, 5649, 6060
BssECI	CCNNGG	5 cut(s)	525, 3171, 5266, 5475, 6271
BssNAI	GTATAC	1 cut(s)	2517
BssNI	GRCGYC	3 cut(s)	48, 129, 5169
BssSI	CACGAG	1 cut(s)	5249
BssT1I	CCWWGG	2 cut(s)	525, 5266
Bst1107I	GTATAC	1 cut(s)	2517
Bst2BI	CACGAG	1 cut(s)	5249
Bst2UI	CCWGG	4 cut(s)	2759, 3173, 4935, 5736
BstACI	GRCGYC	3 cut(s)	48, 129, 5169
BstAPI	GCANNNNNTGC	3 cut(s)	2489, 2672, 2828
BstAUI	TGTACA	1 cut(s)	1911
BstBAI	YACGTR	3 cut(s)	1226, 2828, 6251
BstBI	TTCGAA	1 cut(s)	5212
BstDSI	CCRYGG	2 cut(s)	5475, 6271
BstFNI	CGCG	6 cut(s)	77, 224, 2475, 2604, 3819, 5477
BstH2I	RGCGCY	2 cut(s)	253, 5820
BstHHI	GCGC	5 cut(s)	121, 226, 252, 3231, 5819
BstMCI	CGRYCG	1 cut(s)	1275
BstNI	CCWGG	4 cut(s)	2759, 3173, 4935, 5736
BstNSI	RCATGY	9 cut(s)	644, 2378, 2890, 3963, 4240, 4323, 4490, 4736, 5156
BstSCI	CCNGG	4 cut(s)	2757, 3171, 4933, 5734
BstSLI	GKGCMC	5 cut(s)	1644, 3504, 3694, 5601, 6250
BstUI	CGCG	6 cut(s)	77, 224, 2475, 2604, 3819, 5477
BstV2I	GAAGAC	7 cut(s)	344, 1031, 1079, 3207, 4613, 4739, 6232
BstX2I	RGATCY	7 cut(s)	1018, 2083, 2786, 4183, 4339, 4360, 5806
BstYI	RGATCY	7 cut(s)	1018, 2083, 2786, 4183, 4339, 4360, 5806
BstZ17I	GTATAC	1 cut(s)	2517
Bsu15I	ATCGAT	1 cut(s)	5937
Bsu36I	CCTNAGG	2 cut(s)	4752, 5091
BsuTUI	ATCGAT	1 cut(s)	5937
BtgI	CCRYGG	2 cut(s)	5475, 6271
BtgZI	GCGATG	1 cut(s)	3238
BtrI	CACGTC	2 cut(s)	6245, 6278
BtsI	GCAGTG	2 cut(s)	3231, 4523
BtsIMutI	CAGTG	9 cut(s)	3231, 3555, 4523, 5163, 5204, 5656, 5964, 6067, 6075
BtuMI	TCGCGA	1 cut(s)	2475
BveI	ACCTGC	4 cut(s)	164, 4084, 5362, 6088
CaiI	CAGNNNCTG	3 cut(s)	1445, 4525, 5297
CciI	TCATGA	2 cut(s)	1288, 1612
CfoI	GCGC	5 cut(s)	121, 226, 252, 3231, 5819
Cfr13I	GGNCC	8 cut(s)	487, 885, 2041, 4576, 4937, 5073, 5279, 6281
Cfr42I	CCGCGG	1 cut(s)	5478
ClaI	ATCGAT	1 cut(s)	5937
CseI	GACGC	7 cut(s)	83, 137, 940, 1274, 3899, 5177, 6248
DraIII	CACNNNGTG	2 cut(s)	5105, 6239
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	2 cut(s)	34, 3513
EciI	GGCGGA	2 cut(s)	77, 6160
Ecl136II	GAGCTC	2 cut(s)	262, 1807
Eco130I	CCWWGG	2 cut(s)	525, 5266
Eco24I	GRGCYC	3 cut(s)	264, 1809, 5137
Eco31I	GGTCTC	1 cut(s)	3031
Eco32I	GATATC	2 cut(s)	2755, 3642
Eco47I	GGWCC	4 cut(s)	885, 4576, 4937, 5279
Eco53kI	GAGCTC	2 cut(s)	262, 1807
Eco72I	CACGTG	1 cut(s)	6251
Eco81I	CCTNAGG	2 cut(s)	4752, 5091
Eco88I	CYCGRG	4 cut(s)	167, 209, 443, 2991
EcoICRI	GAGCTC	2 cut(s)	262, 1807
EcoO109I	RGGNCCY	1 cut(s)	4576
EcoRI	GAATTC	2 cut(s)	1126, 5845
EcoRII	CCWGG	4 cut(s)	2757, 3171, 4933, 5734
EcoRV	GATATC	2 cut(s)	2755, 3642
EcoT14I	CCWWGG	2 cut(s)	525, 5266
EcoT22I	ATGCAT	1 cut(s)	2929
EcoT38I	GRGCYC	3 cut(s)	264, 1809, 5137
ErhI	CCWWGG	2 cut(s)	525, 5266
Esp3I	CGTCTC	4 cut(s)	19, 36, 923, 5117
FalI	AAGNNNNNCTT	6 cut(s)	3188, 3220, 3708, 3740, 4731, 4763
FaqI	GGGAC	3 cut(s)	1941, 3043, 6192
FbaI	TGATCA	4 cut(s)	915, 1416, 1470, 6295
FblI	GTMKAC	1 cut(s)	2516
FriOI	GRGCYC	3 cut(s)	264, 1809, 5137
GlaI	GCGC	5 cut(s)	120, 225, 251, 3230, 5818
GsaI	CCCAGC	3 cut(s)	1729, 2467, 4482
HaeII	RGCGCY	2 cut(s)	253, 5820
HapII	CCGG	2 cut(s)	33, 85
HgaI	GACGC	7 cut(s)	83, 137, 940, 1274, 3899, 5177, 6248
HhaI	GCGC	5 cut(s)	121, 226, 252, 3231, 5819
Hin1I	GRCGYC	3 cut(s)	48, 129, 5169
Hin6I	GCGC	5 cut(s)	119, 224, 250, 3229, 5817
HinP1I	GCGC	5 cut(s)	119, 224, 250, 3229, 5817
HincII	GTYRAC	6 cut(s)	613, 2260, 2328, 3291, 3488, 5525
HindII	GTYRAC	6 cut(s)	613, 2260, 2328, 3291, 3488, 5525
HindIII	AAGCTT	5 cut(s)	671, 848, 3306, 5223, 5397
HpaII	CCGG	2 cut(s)	33, 85
Hpy99I	CGWCG	9 cut(s)	23, 50, 53, 77, 131, 248, 3615, 4403, 6264
Hsp92I	GRCGYC	3 cut(s)	48, 129, 5169
HspAI	GCGC	5 cut(s)	119, 224, 250, 3229, 5817
Kpn2I	TCCGGA	1 cut(s)	84
KpnI	GGTACC	1 cut(s)	4761
Ksp22I	TGATCA	4 cut(s)	915, 1416, 1470, 6295
KspI	CCGCGG	1 cut(s)	5478
LguI	GCTCTTC	3 cut(s)	14, 1860, 5484
MaeIII	GTNAC	8 cut(s)	1226, 1508, 2129, 3911, 4023, 4096, 5017, 6070
MbiI	CCGCTC	1 cut(s)	7
MfeI	CAATTG	3 cut(s)	3509, 5496, 6189
MflI	RGATCY	7 cut(s)	1018, 2083, 2786, 4183, 4339, 4360, 5806
MhlI	GDGCHC	8 cut(s)	264, 1644, 1809, 3504, 3694, 5137, 5601, 6250
MluI	ACGCGT	1 cut(s)	75
MlyI	GAGTC	9 cut(s)	221, 949, 1093, 1246, 1430, 1744, 2300, 4960, 5252
MmeI	TCCRAC	4 cut(s)	42, 3856, 4419, 6227
Mph1103I	ATGCAT	1 cut(s)	2929
MroI	TCCGGA	1 cut(s)	84
MroXI	GAANNNNTTC	2 cut(s)	1890, 3544
MslI	CAYNNNNRTG	3 cut(s)	645, 1506, 3977
MspA1I	CMGCKG	4 cut(s)	2269, 3080, 5477, 5906
MspI	CCGG	2 cut(s)	33, 85
MspR9I	CCNGG	4 cut(s)	2759, 3173, 4935, 5736
MunI	CAATTG	3 cut(s)	3509, 5496, 6189
Mva1269I	GAATGC	5 cut(s)	475, 1726, 3872, 4621, 6154
MvaI	CCWGG	4 cut(s)	2759, 3173, 4935, 5736
MvnI	CGCG	6 cut(s)	77, 224, 2475, 2604, 3819, 5477
NheI	GCTAGC	1 cut(s)	2030
NlaIV	GGNNCC	9 cut(s)	89, 1173, 4759, 4786, 5075, 5097, 5598, 5631, 6283
NmeAIII	GCCGAG	3 cut(s)	172, 2518, 3541
NmuCI	GTSAC	6 cut(s)	1226, 1508, 2129, 3911, 5017, 6070
NruI	TCGCGA	1 cut(s)	2475
NsiI	ATGCAT	1 cut(s)	2929
NspI	RCATGY	9 cut(s)	644, 2378, 2890, 3963, 4240, 4323, 4490, 4736, 5156
NspV	TTCGAA	1 cut(s)	5212
PaeI	GCATGC	3 cut(s)	644, 4490, 4736
PaeR7I	CTCGAG	4 cut(s)	167, 209, 443, 2991
PagI	TCATGA	2 cut(s)	1288, 1612
PaqCI	CACCTGC	1 cut(s)	5362
PciI	ACATGT	1 cut(s)	4236
PciSI	GCTCTTC	3 cut(s)	14, 1860, 5484
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 3733, 6256, 6268
PctI	GAATGC	5 cut(s)	475, 1726, 3872, 4621, 6154
PdmI	GAANNNNTTC	2 cut(s)	1890, 3544
PflFI	GACNNNGTC	2 cut(s)	47, 110
PflMI	CCANNNNNTGG	1 cut(s)	3067
PleI	GAGTC	9 cut(s)	220, 948, 1092, 1245, 1430, 1743, 2299, 4960, 5251
PmaCI	CACGTG	1 cut(s)	6251
PmlI	CACGTG	1 cut(s)	6251
PpsI	GAGTC	9 cut(s)	220, 948, 1092, 1245, 1430, 1743, 2299, 4960, 5251
Ppu21I	YACGTR	3 cut(s)	1226, 2828, 6251
PpuMI	RGGWCCY	1 cut(s)	4576
PscI	ACATGT	1 cut(s)	4236
PsiI	TTATAA	1 cut(s)	4430
Psp124BI	GAGCTC	2 cut(s)	264, 1809
Psp1406I	AACGTT	1 cut(s)	5037
Psp5II	RGGWCCY	1 cut(s)	4576
Psp6I	CCWGG	4 cut(s)	2757, 3171, 4933, 5734
PspCI	CACGTG	1 cut(s)	6251
PspFI	CCCAGC	3 cut(s)	1725, 2463, 4478
PspGI	CCWGG	4 cut(s)	2757, 3171, 4933, 5734
PspN4I	GGNNCC	9 cut(s)	89, 1173, 4759, 4786, 5075, 5097, 5598, 5631, 6283
PspPI	GGNCC	8 cut(s)	487, 885, 2041, 4576, 4937, 5073, 5279, 6281
PspPPI	RGGWCCY	1 cut(s)	4576
PspXI	VCTCGAGB	2 cut(s)	167, 209
PstI	CTGCAG	6 cut(s)	802, 1018, 2059, 2436, 3079, 4891
PstNI	CAGNNNCTG	3 cut(s)	1445, 4525, 5297
PsuI	RGATCY	7 cut(s)	1018, 2083, 2786, 4183, 4339, 4360, 5806
PsyI	GACNNNGTC	2 cut(s)	47, 110
PvuII	CAGCTG	1 cut(s)	5906
RruI	TCGCGA	1 cut(s)	2475
RseI	CAYNNNNRTG	3 cut(s)	645, 1506, 3977
SacI	GAGCTC	2 cut(s)	264, 1809
SacII	CCGCGG	1 cut(s)	5478
SapI	GCTCTTC	3 cut(s)	14, 1860, 5484
Sau96I	GGNCC	8 cut(s)	487, 885, 2041, 4576, 4937, 5073, 5279, 6281
ScaI	AGTACT	1 cut(s)	6028
SchI	GAGTC	9 cut(s)	221, 949, 1093, 1246, 1430, 1744, 2300, 4960, 5252
ScrFI	CCNGG	4 cut(s)	2759, 3173, 4935, 5736
SduI	GDGCHC	8 cut(s)	264, 1644, 1809, 3504, 3694, 5137, 5601, 6250
Sfr274I	CTCGAG	4 cut(s)	167, 209, 443, 2991
Sfr303I	CCGCGG	1 cut(s)	5478
SfuI	TTCGAA	1 cut(s)	5212
SgrBI	CCGCGG	1 cut(s)	5478
SinI	GGWCC	4 cut(s)	885, 4576, 4937, 5279
SlaI	CTCGAG	4 cut(s)	167, 209, 443, 2991
SmiMI	CAYNNNNRTG	3 cut(s)	645, 1506, 3977
SphI	GCATGC	3 cut(s)	644, 4490, 4736
SspI	AATATT	2 cut(s)	2155, 5371
SstI	GAGCTC	2 cut(s)	264, 1809
StyD4I	CCNGG	4 cut(s)	2757, 3171, 4933, 5734
StyI	CCWWGG	2 cut(s)	525, 5266
TatI	WGTACW	3 cut(s)	1911, 3447, 6026
TauI	GCSGC	3 cut(s)	7, 134, 3083
TscAI	CASTG	9 cut(s)	3238, 3562, 4530, 5170, 5211, 5656, 5971, 6067, 6082
TseFI	GTSAC	6 cut(s)	1226, 1508, 2129, 3911, 5017, 6070
Tsp45I	GTSAC	6 cut(s)	1226, 1508, 2129, 3911, 5017, 6070
TspGWI	ACGGA	6 cut(s)	356, 703, 1490, 2284, 5141, 6260
TspRI	CASTG	9 cut(s)	3238, 3562, 4530, 5170, 5211, 5656, 5971, 6067, 6082
Tth111I	GACNNNGTC	2 cut(s)	47, 110
Van91I	CCANNNNNTGG	1 cut(s)	3067
VneI	GTGCAC	3 cut(s)	1640, 3500, 6246
VpaK11BI	GGWCC	4 cut(s)	885, 4576, 4937, 5279
XbaI	TCTAGA	1 cut(s)	1835
XceI	RCATGY	9 cut(s)	644, 2378, 2890, 3963, 4240, 4323, 4490, 4736, 5156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	5273
XhoI	CTCGAG	4 cut(s)	167, 209, 443, 2991
XmiI	GTMKAC	1 cut(s)	2516
XmnI	GAANNNNTTC	2 cut(s)	1890, 3544
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	6028
Zsp2I	ATGCAT	1 cut(s)	2929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.