Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015019

Physical Location & Seq

Genomic Coordinates Forward (+)

12934097 .. 12939059

Gene Structure 4963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G207800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGATCTGCTCTGTGAAGCAATACTCAACTATAACAAATGGGTCTGATATCTTTTTGCGGCAGAGCACTCGGCCGCCGATGCAAAGATCGTTGCTTTTGCCCTCTCTTCCGGTGCAAAAGTCTCAGAGATCAGTTATTTCAGTGCAAAAGGCCTTACATGTGTCTGCGATCGAGAGTTTTGGGTCTCCAAAGCCTCGAACAAGTTTGATCAAATGCCAAGCTTACGAGGCCGACCGATCGCAGCCGATCGAGTCGAACATCGAGCTTCCGAAGGCCGATACTCGATCAGAGGCGGCGAAGAAGCTGAAGATCGGTGTGTATTTTGCTATGTGGTGGGCTCTGAACGTGGTTTTCAATATATACAATAAGAAGGTGTTGAATGCCTACCCCTTCCCTTGGTTGACCTCCACTTTGTCTTTGGCATGTGGGTCTCTGATCATGTTGATCTCCTGGGCTACTAGGATTGCTGAGGTGCCCAAGACTGATATGGACTTCTGGAAGGCTCTGTTTCCTGTTGCTGTGGCACATACAATTGGGCATGTAGCAGCGACTGTTAGTATGTCTAAGGTTGCAGTTTCTTTCACTCATATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTATTGGTTTCAAGGTTCCTGTTGGGCGAGTCCTTCCCTACATCCGTCTACCTGTCCCTCCTTCCAATCATCGGTGGGTGTGGTCTTGCTGCCTTGACAGAGCTTAACTTCAACATGATAGGATTTATGGGGGCCATGATATCTAACCTGGCGTTTGTCTTTCGTAACATATTTTCAAAGCGGGGCATGAAGGGAAAGTCTGTTAGTGGGATGAACTATTATGCCTGTCTATCTATGTTGTCGCTCATAATTCTCACACCATTTGCAATTGCGGTGGAGGGACCTGCGATGTGGAAAGCTGGATTTGAAACGGCCTTCTCTCAAATTGGACCCAACTTAATATGGTGGATGGCGGCCCAGAGTGTCTTCTATCATCTCTACAACCAGGTGTCATACATGTCCCTGGACGAGATTTCTCCCTTGACATTTAGCATAGGAAACACCATGAAACGTATATCTGTCATAGTGTCCTCCATCATCATATTCCACACACCTGTTCAGCCCGTCAATGCTCTTGGAGCTGCTATTGCAATTTTCGGAACTTTCTTGTATTCCCAGGTAAGCCCATTGAGAAGCTTGGCCTCGAGGAGGTTTACGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

408

Amino Acids

44.9

Weight (kDa)

9.76

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54800
fragaria_vesca	FvH4_3g22090 FvH4_3g22090
malus_domestica	MD03G1208900.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1 Prupe.4G207800_v2.0.a1
pyrus_communis	pycom03g15790 pycom11g19730
rosa_chinensis	RchiOBHm_Chr5g0037901
rosa_laevigata	RLG00000033821
rosa_multiflora	Rmu_sc0005416.1_g000038
rosa_roxburghii	Rroxscaffold_1G00043000
rosa_rugosa	Rorug05G0168800
rosa_samantha	Rh5AG257500 Rh5BG260100
rosa_wichuraiana	Rw5G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1201
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	666
AciI	CCGC	6 cut(s)	58, 74, 293, 799, 890, 971
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	396, 689, 1206
AflIII	ACRYGT	2 cut(s)	157, 1014
AgsI	TTSAA	6 cut(s)	355, 379, 630, 730, 795, 926
AjnI	CCWGG	5 cut(s)	449, 765, 1002, 1020, 1173
AluBI	AGCT	8 cut(s)	221, 265, 304, 611, 721, 917, 1139, 1194
AluI	AGCT	8 cut(s)	221, 265, 304, 611, 721, 917, 1139, 1194
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	126, 189, 435
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	1201
AoxI	GGCC	8 cut(s)	71, 150, 228, 273, 750, 930, 972, 1197
ApeKI	GCWGC	4 cut(s)	241, 545, 707, 1139
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AspS9I	GGNCC	4 cut(s)	750, 899, 947, 973
AvaI	CYCGRG	1 cut(s)	1201
AvaII	GGWCC	2 cut(s)	899, 947
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	976
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	253, 557, 694, 1126
BccI	CCATC	2 cut(s)	961, 1100
BceAI	ACGGC	1 cut(s)	945
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	5 cut(s)	451, 767, 1004, 1022, 1175
BclI	TGATCA	2 cut(s)	207, 435
BcoDI	GTCTC	3 cut(s)	126, 189, 435
BfaI	CTAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	910
BisI	GCNGC	8 cut(s)	59, 74, 242, 294, 546, 708, 972, 1140
BlsI	GCNGC	8 cut(s)	60, 75, 243, 295, 547, 709, 973, 1141
Bme1390I	CCNGG	5 cut(s)	451, 767, 1004, 1022, 1175
Bme18I	GGWCC	2 cut(s)	899, 947
BmeT110I	CYCGRG	1 cut(s)	1201
BmgT120I	GGNCC	4 cut(s)	750, 899, 947, 973
BmiI	GGNNCC	5 cut(s)	474, 635, 751, 900, 949
BmrFI	CCNGG	5 cut(s)	451, 767, 1004, 1022, 1175
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	976
Bpu10I	CCTNAGC	1 cut(s)	468
BsaI	GGTCTC	2 cut(s)	189, 435
BsaJI	CCNNGG	4 cut(s)	395, 450, 1020, 1173
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 689, 1206
BseBI	CCWGG	5 cut(s)	451, 767, 1004, 1022, 1175
BseDI	CCNNGG	4 cut(s)	395, 450, 1020, 1173
BseGI	GGATG	3 cut(s)	659, 834, 972
BseLI	CCNNNNNNNGG	3 cut(s)	396, 689, 1206
BseMII	CTCAG	2 cut(s)	137, 459
BseRI	GAGGAG	1 cut(s)	1219
BseSI	GKGCMC	1 cut(s)	477
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	4 cut(s)	253, 557, 694, 1126
Bsh1285I	CGRYCG	5 cut(s)	74, 171, 235, 239, 249
BshFI	GGCC	8 cut(s)	73, 152, 230, 275, 752, 932, 974, 1199
BshNI	GGYRCC	1 cut(s)	472
BsiEI	CGRYCG	5 cut(s)	74, 171, 235, 239, 249
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	1201
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	3 cut(s)	658, 912, 1003
BslI	CCNNNNNNNGG	3 cut(s)	396, 689, 1206
BsmAI	GTCTC	3 cut(s)	126, 189, 435
BsmFI	GGGAC	3 cut(s)	658, 912, 1003
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	8 cut(s)	73, 152, 230, 275, 752, 932, 974, 1199
Bso31I	GGTCTC	2 cut(s)	189, 435
BsoBI	CYCGRG	1 cut(s)	1201
Bsp1286I	GDGCHC	3 cut(s)	68, 340, 477
BspACI	CCGC	6 cut(s)	58, 74, 293, 799, 890, 971
BspANI	GGCC	8 cut(s)	73, 152, 230, 275, 752, 932, 974, 1199
BspCNI	CTCAG	2 cut(s)	136, 460
BspLI	GGNNCC	5 cut(s)	474, 635, 751, 900, 949
BspMI	ACCTGC	1 cut(s)	910
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	189, 435
BssECI	CCNNGG	4 cut(s)	395, 450, 1020, 1173
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	5 cut(s)	451, 767, 1004, 1022, 1175
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	3 cut(s)	123, 468, 564
BstENI	CCTNNNNNAGG	1 cut(s)	1204
BstF5I	GGATG	3 cut(s)	659, 834, 972
BstMAI	GTCTC	3 cut(s)	126, 189, 435
BstMCI	CGRYCG	5 cut(s)	74, 171, 235, 239, 249
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 227, 1136, 1145
BstNI	CCWGG	5 cut(s)	451, 767, 1004, 1022, 1175
BstNSI	RCATGY	4 cut(s)	161, 426, 542, 1018
BstSCI	CCNGG	5 cut(s)	449, 765, 1002, 1020, 1173
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	253, 557, 694, 1126
BstV2I	GAAGAC	1 cut(s)	976
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	8 cut(s)	73, 152, 230, 275, 752, 932, 974, 1199
BtgZI	GCGATG	1 cut(s)	920
BtsCI	GGATG	3 cut(s)	659, 834, 972
BtsIMutI	CAGTG	2 cut(s)	147, 622
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	4 cut(s)	750, 899, 947, 973
CsiI	ACCWGGT	1 cut(s)	1002
CspCI	CAANNNNNGTGG	2 cut(s)	873, 908
DdeI	CTNAG	3 cut(s)	123, 468, 564
EaeI	YGGCCR	1 cut(s)	71
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	395
Eco147I	AGGCCT	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	2 cut(s)	189, 435
Eco32I	GATATC	2 cut(s)	49, 759
Eco47I	GGWCC	2 cut(s)	899, 947
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	1201
EcoNI	CCTNNNNNAGG	1 cut(s)	1204
EcoO109I	RGGNCCY	1 cut(s)	899
EcoRII	CCWGG	5 cut(s)	449, 765, 1002, 1020, 1173
EcoRV	GATATC	2 cut(s)	49, 759
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	395
FaqI	GGGAC	3 cut(s)	658, 912, 1003
FauI	CCCGC	1 cut(s)	792
FbaI	TGATCA	2 cut(s)	207, 435
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	8 cut(s)	59, 74, 242, 294, 546, 708, 972, 1140
FokI	GGATG	3 cut(s)	646, 841, 979
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	8 cut(s)	59, 74, 242, 294, 546, 708, 972, 1140
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	8 cut(s)	59, 74, 242, 294, 546, 708, 972, 1140
HaeIII	GGCC	8 cut(s)	73, 152, 230, 275, 752, 932, 974, 1199
HapII	CCGG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	219, 1192
HinfI	GANTC	2 cut(s)	251, 647
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	402, 667, 1212
Hpy188I	TCNGA	7 cut(s)	46, 126, 270, 289, 342, 435, 1157
Hpy188III	TCNNGA	3 cut(s)	172, 496, 595
Hpy8I	GTNNAC	3 cut(s)	402, 667, 1212
HpyAV	CCTTC	8 cut(s)	265, 364, 400, 493, 661, 689, 802, 943
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	3 cut(s)	345, 1069, 1214
HpyCH4V	TGCA	6 cut(s)	82, 115, 145, 572, 884, 1148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 227, 1136, 1145
HpyF3I	CTNAG	3 cut(s)	123, 468, 564
HpySE526I	ACGT	3 cut(s)	345, 1069, 1214
Ksp22I	TGATCA	2 cut(s)	207, 435
LmnI	GCTCC	1 cut(s)	1136
Lsp1109I	GCAGC	4 cut(s)	253, 557, 694, 1126
LweI	GCATC	1 cut(s)	69
MabI	ACCWGGT	1 cut(s)	1002
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	3 cut(s)	345, 1069, 1214
MaeIII	GTNAC	1 cut(s)	782
MboII	GAAGA	4 cut(s)	98, 310, 319, 976
MfeI	CAATTG	2 cut(s)	531, 885
MhlI	GDGCHC	3 cut(s)	68, 340, 477
MluCI	AATT	5 cut(s)	531, 867, 885, 942, 1149
MlyI	GAGTC	2 cut(s)	260, 656
MseI	TTAA	2 cut(s)	723, 956
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	5 cut(s)	451, 767, 1004, 1022, 1175
MunI	CAATTG	2 cut(s)	531, 885
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	5 cut(s)	451, 767, 1004, 1022, 1175
MwoI	GCNNNNNNNGC	4 cut(s)	79, 227, 1136, 1145
NlaIV	GGNNCC	5 cut(s)	474, 635, 751, 900, 949
NmeAIII	GCCGAG	1 cut(s)	49
NspI	RCATGY	4 cut(s)	161, 426, 542, 1018
PaeR7I	CTCGAG	1 cut(s)	1201
PceI	AGGCCT	1 cut(s)	152
PciI	ACATGT	2 cut(s)	157, 1014
PctI	GAATGC	1 cut(s)	385
PkrI	GCNGC	8 cut(s)	60, 75, 243, 295, 547, 709, 973, 1141
Ple19I	CGATCG	3 cut(s)	171, 239, 249
PleI	GAGTC	2 cut(s)	259, 655
PpsI	GAGTC	2 cut(s)	259, 655
PpuMI	RGGWCCY	1 cut(s)	899
PscI	ACATGT	2 cut(s)	157, 1014
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	5 cut(s)	449, 765, 1002, 1020, 1173
PspGI	CCWGG	5 cut(s)	449, 765, 1002, 1020, 1173
PspN4I	GGNNCC	5 cut(s)	474, 635, 751, 900, 949
PspPI	GGNCC	4 cut(s)	750, 899, 947, 973
PspPPI	RGGWCCY	1 cut(s)	899
PspXI	VCTCGAGB	1 cut(s)	1201
PstNI	CAGNNNCTG	1 cut(s)	551
PvuI	CGATCG	3 cut(s)	171, 239, 249
SaqAI	TTAA	2 cut(s)	723, 956
SatI	GCNGC	8 cut(s)	59, 74, 242, 294, 546, 708, 972, 1140
Sau96I	GGNCC	4 cut(s)	750, 899, 947, 973
SchI	GAGTC	2 cut(s)	260, 656
ScrFI	CCNGG	5 cut(s)	451, 767, 1004, 1022, 1175
SduI	GDGCHC	3 cut(s)	68, 340, 477
SexAI	ACCWGGT	1 cut(s)	1002
SfaNI	GCATC	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	1201
SinI	GGWCC	2 cut(s)	899, 947
SlaI	CTCGAG	1 cut(s)	1201
SmlI	CTYRAG	1 cut(s)	1201
SmoI	CTYRAG	1 cut(s)	1201
Sse9I	AATT	5 cut(s)	531, 867, 885, 942, 1149
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	6 cut(s)	58, 74, 293, 799, 890, 971
SspMI	CTAG	1 cut(s)	459
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	5 cut(s)	449, 765, 1002, 1020, 1173
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	3 cut(s)	348, 1072, 1217
TaqI	TCGA	7 cut(s)	171, 196, 249, 254, 261, 283, 1202
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	531, 867, 885, 942, 1149
TauI	GCSGC	4 cut(s)	61, 76, 296, 974
Tru1I	TTAA	2 cut(s)	723, 956
Tru9I	TTAA	2 cut(s)	723, 956
TscAI	CASTG	2 cut(s)	147, 622
TseI	GCWGC	4 cut(s)	241, 545, 707, 1139
TspDTI	ATGAA	4 cut(s)	821, 845, 1079, 1207
TspGWI	ACGGA	1 cut(s)	652
TspRI	CASTG	2 cut(s)	147, 622
VpaK11BI	GGWCC	2 cut(s)	899, 947
XagI	CCTNNNNNAGG	1 cut(s)	1204
XceI	RCATGY	4 cut(s)	161, 426, 542, 1018
XcmI	CCANNNNNNNNNTGG	2 cut(s)	415, 484
XhoI	CTCGAG	1 cut(s)	1201
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.