Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015019

Physical Location & Seq

Genomic Coordinates Forward (+)

33502671 .. 33506515

Gene Structure 3845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG257500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGATCTGCTCTGTGAAACAATCCCCGGCGATCACAAATGGCTGTGATGTTTTTCTCCGGCCAAAAGCTCGGCCGTCGGTGCAAGGATCTTTGCATTTGCCGTCTCTGCCTTTGAAGAGCTTTCAAAGGTCGGTGCTTTCGGTACAGAAGCCTCTGCACGTCTCTAGCATAGAGACCTTTGGATCACTCAAGGCTCGAACGAGTTTGATCAAATGCAAGGCTTACGAGGCAGATCAGTCAGACCCGATCGAGCTTCCAAAGGTGGACACTCGATCGGAGGCGGCCAAGAAGTTGAAGATCGGTGTGTATTTTGCTATGTGGTGGGCTCTGAATGTGGTGTTCAATATTTACAATAAGAAGGTGTTGAATGCGTACCCGTTTCCTTGGTTGACCTCCACTCTGTCTTTGGCATGTGGGTCTTTGATCATGTTGGTATCTTGGGCTACCAGGATTGCTGAGGCGCCCAAGACTGATATGGATTTTTGGAAGGCTCTGTTTCCTGTTGCTGTGGCACATACAATTGGACATGTAGCTGCAACTGTTAGTATGTCTAAGGTTGCAGTTTCTTTCACCCATATCATCAAGAGTGGAGAGCCTGCTTTTAGTGTATTGGTTTCGAGGTTCCTGCTGGGCGAGTCCTTCCCTACTTCAGTCTACCTCTCCCTTCTTCCAATCATTGGTGGTTGTGGTCTTGCTGCTCTGACAGAGCTTAATTTTAACATGATTGGATTCATGGGGGCCATGATATCAAACTTGGCATTTGTCTTCCGAAACATATTTTCAAAGAAGGGCATGAAGGGGAAGTCTGTTAGCGGAATGAATTATTATGCTTGTCTATCTATTATGTCTCTCATAATTCTCACACCATTTGCAATTGCGGTGGAGGGACCCAAGATGTGGGCAGCTGGATTTGAAACAGCCATGGCGCAAATTGGTCCCAACTTGATATGGTGGATGGCAGCCCAGAGTGTCTTCTATCATCTCTACAACCAGGTGTCATACATGTCGCTAGATGAGATCTCTCCTTTGACATTTAGCATAGGGAACACCATGAAACGTATTTCTGTCATAGTATCCTCCATCATCATATTCCACACACCTGTCCAGCCTGTCAATGCTCTTGGAGCTGCTATTGCAATTTTCGGAACCTTCTTGTATTCCCAGGCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

391

Amino Acids

42.77

Weight (kDa)

9.56

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	98 - 387	1.6e-116	Triose-phosphate Transporter family
EamA	PF00892	105 - 231	8e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54800
fragaria_vesca	FvH4_3g22090 FvH4_3g22090
malus_domestica	MD03G1208900.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1 Prupe.4G207800_v2.0.a1
pyrus_communis	pycom03g15790 pycom11g19730
rosa_chinensis	RchiOBHm_Chr5g0037901
rosa_laevigata	RLG00000033821
rosa_multiflora	Rmu_sc0005416.1_g000038
rosa_roxburghii	Rroxscaffold_1G00043000
rosa_rugosa	Rorug05G0168800
rosa_samantha	Rh5AG257500 Rh5BG260100
rosa_wichuraiana	Rw5G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AccB7I	CCANNNNNTGG	2 cut(s)	677, 897
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	3 cut(s)	281, 813, 878
AclWI	GGATC	2 cut(s)	94, 190
AcoI	YGGCCR	3 cut(s)	59, 71, 282
AcuI	CTGAAG	1 cut(s)	633
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	2 cut(s)	144, 374
AfiI	CCNNNNNNNGG	2 cut(s)	677, 897
AflIII	ACRYGT	2 cut(s)	526, 1002
AgsI	TTSAA	7 cut(s)	115, 125, 295, 343, 367, 783, 914
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	446, 990, 1161
AluBI	AGCT	7 cut(s)	68, 120, 253, 533, 709, 905, 1127
AluI	AGCT	7 cut(s)	68, 120, 253, 533, 709, 905, 1127
Alw26I	GTCTC	4 cut(s)	108, 166, 167, 852
AlwI	GGATC	2 cut(s)	94, 190
AoxI	GGCC	4 cut(s)	59, 71, 282, 738
ApeKI	GCWGC	5 cut(s)	533, 695, 902, 959, 1127
AspLEI	GCGC	2 cut(s)	463, 928
AspS9I	GGNCC	3 cut(s)	738, 887, 935
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	887, 935
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	757, 964
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
BccI	CCATC	2 cut(s)	949, 1088
BceAI	ACGGC	2 cut(s)	58, 85
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	3 cut(s)	448, 992, 1163
BciVI	GTATCC	1 cut(s)	1084
BclI	TGATCA	2 cut(s)	207, 423
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	4 cut(s)	108, 166, 167, 852
BfaI	CTAG	2 cut(s)	165, 1010
BfoI	RGCGCY	1 cut(s)	464
BfuI	GTATCC	1 cut(s)	1084
BglII	AGATCT	1 cut(s)	1017
BisI	GCNGC	6 cut(s)	282, 534, 696, 903, 960, 1128
BlsI	GCNGC	6 cut(s)	283, 535, 697, 904, 961, 1129
Bme1390I	CCNGG	4 cut(s)	26, 448, 992, 1163
Bme18I	GGWCC	2 cut(s)	887, 935
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	738, 887, 935
BmiI	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
BmrFI	CCNGG	4 cut(s)	26, 448, 992, 1163
BpiI	GAAGAC	2 cut(s)	757, 964
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	4 cut(s)	24, 383, 921, 1161
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 897
BseBI	CCWGG	3 cut(s)	448, 992, 1163
BseDI	CCNNGG	4 cut(s)	24, 383, 921, 1161
BseGI	GGATG	1 cut(s)	960
BseLI	CCNNNNNNNGG	2 cut(s)	677, 897
BseMII	CTCAG	1 cut(s)	447
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
BseYI	CCCAGC	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	140
Bsh1285I	CGRYCG	3 cut(s)	74, 249, 275
BshFI	GGCC	4 cut(s)	61, 73, 284, 740
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	3 cut(s)	74, 249, 275
BsiSI	CCGG	2 cut(s)	26, 58
BslFI	GGGAC	2 cut(s)	900, 921
BslI	CCNNNNNNNGG	2 cut(s)	677, 897
BsmAI	GTCTC	4 cut(s)	108, 166, 167, 852
BsmBI	CGTCTC	2 cut(s)	108, 166
BsmFI	GGGAC	2 cut(s)	900, 921
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	61, 73, 284, 740
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	3 cut(s)	281, 813, 878
BspANI	GGCC	4 cut(s)	61, 73, 284, 740
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
BspPI	GGATC	2 cut(s)	94, 190
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	167
BssECI	CCNNGG	4 cut(s)	24, 383, 921, 1161
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	383, 921
Bst2UI	CCWGG	3 cut(s)	448, 992, 1163
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	2 cut(s)	456, 552
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	1 cut(s)	960
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	463, 928
BstMAI	GTCTC	4 cut(s)	108, 166, 167, 852
BstMCI	CGRYCG	3 cut(s)	74, 249, 275
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 106, 227, 1124, 1133
BstNI	CCWGG	3 cut(s)	448, 992, 1163
BstNSI	RCATGY	3 cut(s)	414, 530, 1006
BstSCI	CCNGG	4 cut(s)	24, 446, 990, 1161
BstV1I	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
BstV2I	GAAGAC	2 cut(s)	757, 964
BstX2I	RGATCY	2 cut(s)	86, 1017
BstYI	RGATCY	2 cut(s)	86, 1017
BstZI	CGGCCG	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	1084
BsuRI	GGCC	4 cut(s)	61, 73, 284, 740
BtgI	CCRYGG	1 cut(s)	921
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	960
Cac8I	GCNNGC	1 cut(s)	597
CfoI	GCGC	2 cut(s)	463, 928
Cfr13I	GGNCC	3 cut(s)	738, 887, 935
CsiI	ACCWGGT	1 cut(s)	990
Csp6I	GTAC	2 cut(s)	143, 373
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviQI	GTAC	2 cut(s)	143, 373
DdeI	CTNAG	2 cut(s)	456, 552
DinI	GGCGCC	1 cut(s)	462
EaeI	YGGCCR	3 cut(s)	59, 71, 282
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	383, 921
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	887, 935
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	887
EcoRII	CCWGG	3 cut(s)	446, 990, 1161
EcoRV	GATATC	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	383, 921
EcoT38I	GRGCYC	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	383, 921
Esp3I	CGTCTC	2 cut(s)	108, 166
FaqI	GGGAC	2 cut(s)	900, 921
FbaI	TGATCA	2 cut(s)	207, 423
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	6 cut(s)	282, 534, 696, 903, 960, 1128
FokI	GGATG	1 cut(s)	967
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	6 cut(s)	282, 534, 696, 903, 960, 1128
FspBI	CTAG	2 cut(s)	165, 1010
GlaI	GCGC	2 cut(s)	462, 927
GluI	GCNGC	6 cut(s)	282, 534, 696, 903, 960, 1128
GsaI	CCCAGC	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	4 cut(s)	61, 73, 284, 740
HapII	CCGG	2 cut(s)	26, 58
HhaI	GCGC	2 cut(s)	463, 928
Hin1I	GRCGYC	1 cut(s)	461
Hin6I	GCGC	2 cut(s)	461, 926
HinP1I	GCGC	2 cut(s)	461, 926
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	635, 729
HpaII	CCGG	2 cut(s)	26, 58
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	3 cut(s)	265, 390, 655
Hpy188I	TCNGA	6 cut(s)	241, 277, 330, 702, 770, 1145
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	3 cut(s)	265, 390, 655
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	7 cut(s)	352, 481, 649, 674, 781, 790, 1159
HpyCH4III	ACNGT	1 cut(s)	541
HpyCH4IV	ACGT	2 cut(s)	159, 1057
HpyCH4V	TGCA	8 cut(s)	82, 94, 157, 216, 536, 560, 872, 1136
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 106, 227, 1124, 1133
HpyF3I	CTNAG	2 cut(s)	456, 552
HpySE526I	ACGT	2 cut(s)	159, 1057
Hsp92I	GRCGYC	1 cut(s)	461
HspAI	GCGC	2 cut(s)	461, 926
KasI	GGCGCC	1 cut(s)	460
KflI	GGGWCCC	1 cut(s)	887
Ksp22I	TGATCA	2 cut(s)	207, 423
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	1124
Lsp1109I	GCAGC	5 cut(s)	520, 682, 914, 971, 1114
MabI	ACCWGGT	1 cut(s)	990
MaeI	CTAG	2 cut(s)	165, 1010
MaeII	ACGT	2 cut(s)	159, 1057
MboII	GAAGA	5 cut(s)	127, 307, 659, 757, 964
MfeI	CAATTG	2 cut(s)	519, 873
MflI	RGATCY	2 cut(s)	86, 1017
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	7 cut(s)	519, 712, 820, 855, 873, 930, 1137
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	644
MnlI	CCTC	9 cut(s)	162, 220, 271, 403, 451, 612, 668, 877, 1087
MseI	TTAA	2 cut(s)	711, 717
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	2 cut(s)	26, 58
MspR9I	CCNGG	4 cut(s)	26, 448, 992, 1163
MunI	CAATTG	2 cut(s)	519, 873
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	3 cut(s)	448, 992, 1163
MwoI	GCNNNNNNNGC	5 cut(s)	79, 106, 227, 1124, 1133
NarI	GGCGCC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	921
NlaIV	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
NmeAIII	GCCGAG	1 cut(s)	49
NspI	RCATGY	3 cut(s)	414, 530, 1006
PciI	ACATGT	2 cut(s)	526, 1002
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	729
PflMI	CCANNNNNTGG	2 cut(s)	677, 897
PkrI	GCNGC	6 cut(s)	283, 535, 697, 904, 961, 1129
Ple19I	CGATCG	2 cut(s)	249, 275
PleI	GAGTC	1 cut(s)	643
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	643
PpuMI	RGGWCCY	1 cut(s)	887
PscI	ACATGT	2 cut(s)	526, 1002
Psp5II	RGGWCCY	1 cut(s)	887
Psp6I	CCWGG	3 cut(s)	446, 990, 1161
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	3 cut(s)	446, 990, 1161
PspN4I	GGNNCC	7 cut(s)	462, 623, 739, 888, 889, 937, 1147
PspPI	GGNCC	3 cut(s)	738, 887, 935
PspPPI	RGGWCCY	1 cut(s)	887
PsuI	RGATCY	2 cut(s)	86, 1017
PvuI	CGATCG	2 cut(s)	249, 275
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	2 cut(s)	144, 374
RsaNI	GTAC	2 cut(s)	143, 373
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	711, 717
SatI	GCNGC	6 cut(s)	282, 534, 696, 903, 960, 1128
Sau96I	GGNCC	3 cut(s)	738, 887, 935
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	4 cut(s)	26, 448, 992, 1163
SduI	GDGCHC	1 cut(s)	328
SexAI	ACCWGGT	1 cut(s)	990
SfoI	GGCGCC	1 cut(s)	462
SinI	GGWCC	2 cut(s)	887, 935
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	7 cut(s)	519, 712, 820, 855, 873, 930, 1137
SsiI	CCGC	3 cut(s)	281, 813, 878
SspDI	GGCGCC	1 cut(s)	460
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	165, 1010
StyD4I	CCNGG	4 cut(s)	24, 446, 990, 1161
StyI	CCWWGG	2 cut(s)	383, 921
TaaI	ACNGT	1 cut(s)	541
TaiI	ACGT	2 cut(s)	162, 1060
TaqI	TCGA	4 cut(s)	196, 249, 271, 617
TasI	AATT	7 cut(s)	519, 712, 820, 855, 873, 930, 1137
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	729
Tru1I	TTAA	2 cut(s)	711, 717
Tru9I	TTAA	2 cut(s)	711, 717
TseI	GCWGC	5 cut(s)	533, 695, 902, 959, 1127
TspDTI	ATGAA	4 cut(s)	721, 809, 833, 1067
Van91I	CCANNNNNTGG	2 cut(s)	677, 897
VpaK11BI	GGWCC	2 cut(s)	887, 935
XceI	RCATGY	3 cut(s)	414, 530, 1006
XcmI	CCANNNNNNNNNTGG	2 cut(s)	403, 472
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	2 cut(s)	165, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.