Rroxscaffold_1G00043000

Glucose-6-phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
61311960 .. 61316651
4692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043000.1

Sequence Viewer

Length: 1257 bp
ATGATCTGCTCTGTGAAACAATCCCCGGCGATCACAAATGGCTGTGATGTTTTTCTCCGGCCAAAAGCTCGGCCGTGGGTGCAAGGATCTTTGCATTTGCCGTCTCTGCCTTTGAAGAGCTTTCAAAGGTCGGTGCTTTCGGTACAGAAGCCTCTGCACGTCTCTAGTATAGAGACCTTTGGATCACTCAAGGCTCGAACGAGTTTGATCAAATGTCAGGCTTACGAGGCAGATCAGTCAGAGCCGATCGAGCTTCCAAAGGTGGATACTCGATCAGAGGCGGCCAAGAAGTTGAAGATCGGTGTGTATTTTGCTATGTGGTGGGCTCTGAATGTGGTGTTCAATATTTACAATAAGAAGGTGTTGAATGCGTACCCGTTTCCTTGGTTGACCTCCACTCTGTCTTTGGCATGTGGGTCTTTGATCATGTTGGTGTCTTGGGCTACCAGGATTGCTGAGGCGCCCAAGACTGATATGGAGTTTTGGAAGGCTCTGTTTCCTGTTGCTGTGGCACATACAATTGGACATGTAGCTGCAACTGTTAGTATGTCTAAGGTTGCAGTTTCTTTCACCCATATCATCAAGAGTGGAGAGCCTGCTTTTAGTGTATTGGTTTCGAGGTTCCTGCTGGGCGAGTCCTTCCCTACTTCAGTCTACCTCTCCCTTATTCCAATCATTGGTGGTTGTGGTCTTGCTGCTCTGACAGAGCTTAATTTTAACATGATCGGATTCATGGGGGCCATGATATCAAACTTGGCATTTGTCTTCCGAAACATATTTTCAAAGAAGGGCATGAAGGGGAAGTCTGTTAGCGGAATGAATTATTATGCTTGTCTATCTATTATGTCTCTCATAATTCTCACACCATTTGCAATTATGGTGGAGGGACCCAAGATGTGGGCAGCTGGATTTGAAACAGCCATGGCGCAAATTGGTCCCAACTTGATATGCTATGATTTTATGGTTCCGTTTTCTTTATTTCCCGCACAGAGTTTGAAATATCATGAAATGTTGGTTCAAGACCATGCATTGTGGATGGCAGCCCAGAGTGTCTTCTATCATCTCTACAACCAGGTGTCATACATGTCGCTAGATGAGATCTCTCCTTTGACATTTAGCATAGGGAACACCATGAAACGTATTTCTGTCATAGTATCCTCCATCATCATATTCCACACACCTGTCCAGCCTGTCAATGCTCTTGGAGCTGCTATTGCAATTTTCGGAACCTTCTTGTATTCCCAGGCAAAGCAGTGA

Protein Analysis

418

Amino Acids

46.08

Weight (kDa)

9.31

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 98 - 414 9.6e-113 Triose-phosphate Transporter family
EamA PF00892 105 - 231 8.2e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54800
fragaria_vesca FvH4_3g22090 FvH4_3g22090
malus_domestica MD03G1208900.v1.1
prunus_persica Prupe.4G207800_v2.0.a1 Prupe.4G207800_v2.0.a1
pyrus_communis pycom03g15790 pycom11g19730
rosa_chinensis RchiOBHm_Chr5g0037901
rosa_laevigata RLG00000033821
rosa_multiflora Rmu_sc0005416.1_g000038
rosa_roxburghii Rroxscaffold_1G00043000
rosa_rugosa Rorug05G0168800
rosa_samantha Rh5AG257500 Rh5BG260100
rosa_wichuraiana Rw5G023860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccB7I CCANNNNNTGG 2 cut(s) 677, 897
AccI GTMKAC 1 cut(s) 654
AciI CCGC 3 cut(s) 281, 813, 984
AclWI GGATC 2 cut(s) 94, 190
AcoI YGGCCR 3 cut(s) 59, 71, 282
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 2 cut(s) 144, 374
AfiI CCNNNNNNNGG 2 cut(s) 677, 897
AflIII ACRYGT 2 cut(s) 526, 1083
AgsI TTSAA 9 cut(s) 115, 125, 295, 343, 367, 783, 914, 997, 1019
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 3 cut(s) 446, 1071, 1242
AluBI AGCT 7 cut(s) 68, 120, 253, 533, 709, 905, 1208
AluI AGCT 7 cut(s) 68, 120, 253, 533, 709, 905, 1208
Alw26I GTCTC 4 cut(s) 108, 166, 167, 852
AlwI GGATC 2 cut(s) 94, 190
AoxI GGCC 4 cut(s) 59, 71, 282, 738
ApeKI GCWGC 5 cut(s) 533, 695, 902, 1040, 1208
AspLEI GCGC 2 cut(s) 463, 928
AspS9I GGNCC 3 cut(s) 738, 887, 935
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 562
AvaII GGWCC 2 cut(s) 887, 935
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 757, 1045
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 520, 682, 914, 1052, 1195
BccI CCATC 2 cut(s) 1030, 1169
BceAI ACGGC 2 cut(s) 58, 85
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 3 cut(s) 448, 1073, 1244
BciVI GTATCC 2 cut(s) 259, 1165
BclI TGATCA 2 cut(s) 207, 423
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 4 cut(s) 108, 166, 167, 852
BfaI CTAG 2 cut(s) 165, 1091
BfoI RGCGCY 1 cut(s) 464
BfuI GTATCC 2 cut(s) 259, 1165
BglII AGATCT 1 cut(s) 1098
BisI GCNGC 6 cut(s) 282, 534, 696, 903, 1041, 1209
BlsI GCNGC 6 cut(s) 283, 535, 697, 904, 1042, 1210
Bme1390I CCNGG 4 cut(s) 26, 448, 1073, 1244
Bme18I GGWCC 2 cut(s) 887, 935
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 3 cut(s) 738, 887, 935
BmiI GGNNCC 8 cut(s) 462, 623, 739, 888, 889, 937, 966, 1228
BmrFI CCNGG 4 cut(s) 26, 448, 1073, 1244
BpiI GAAGAC 2 cut(s) 757, 1045
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 5 cut(s) 24, 74, 383, 921, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 677, 897
BseBI CCWGG 3 cut(s) 448, 1073, 1244
BseDI CCNNGG 5 cut(s) 24, 74, 383, 921, 1242
BseGI GGATG 1 cut(s) 1041
BseLI CCNNNNNNNGG 2 cut(s) 677, 897
BseMII CTCAG 1 cut(s) 447
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 520, 682, 914, 1052, 1195
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 140
Bsh1285I CGRYCG 2 cut(s) 74, 249
BshFI GGCC 4 cut(s) 61, 73, 284, 740
BshNI GGYRCC 1 cut(s) 460
BsiEI CGRYCG 2 cut(s) 74, 249
BsiSI CCGG 2 cut(s) 26, 58
BslFI GGGAC 2 cut(s) 900, 921
BslI CCNNNNNNNGG 2 cut(s) 677, 897
BsmAI GTCTC 4 cut(s) 108, 166, 167, 852
BsmBI CGTCTC 2 cut(s) 108, 166
BsmFI GGGAC 2 cut(s) 900, 921
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 4 cut(s) 61, 73, 284, 740
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 921
BspACI CCGC 3 cut(s) 281, 813, 984
BspANI GGCC 4 cut(s) 61, 73, 284, 740
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 8 cut(s) 462, 623, 739, 888, 889, 937, 966, 1228
BspPI GGATC 2 cut(s) 94, 190
BspQI GCTCTTC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 5 cut(s) 24, 74, 383, 921, 1242
BssNI GRCGYC 1 cut(s) 461
BssT1I CCWWGG 2 cut(s) 383, 921
Bst2UI CCWGG 3 cut(s) 448, 1073, 1244
Bst4CI ACNGT 1 cut(s) 541
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 456, 552
BstDSI CCRYGG 2 cut(s) 74, 921
BstF5I GGATG 1 cut(s) 1041
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 2 cut(s) 463, 928
BstMAI GTCTC 4 cut(s) 108, 166, 167, 852
BstMCI CGRYCG 2 cut(s) 74, 249
BstMWI GCNNNNNNNGC 6 cut(s) 79, 106, 227, 250, 1205, 1214
BstNI CCWGG 3 cut(s) 448, 1073, 1244
BstNSI RCATGY 3 cut(s) 414, 530, 1087
BstSCI CCNGG 4 cut(s) 24, 446, 1071, 1242
BstV1I GCAGC 5 cut(s) 520, 682, 914, 1052, 1195
BstV2I GAAGAC 2 cut(s) 757, 1045
BstX2I RGATCY 2 cut(s) 86, 1098
BstYI RGATCY 2 cut(s) 86, 1098
BstZI CGGCCG 1 cut(s) 71
BsuI GTATCC 2 cut(s) 259, 1165
BsuRI GGCC 4 cut(s) 61, 73, 284, 740
BtgI CCRYGG 2 cut(s) 74, 921
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 1041
Cac8I GCNNGC 1 cut(s) 597
CciI TCATGA 1 cut(s) 1003
CfoI GCGC 2 cut(s) 463, 928
Cfr13I GGNCC 3 cut(s) 738, 887, 935
CsiI ACCWGGT 1 cut(s) 1071
Csp6I GTAC 2 cut(s) 143, 373
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviQI GTAC 2 cut(s) 143, 373
DdeI CTNAG 2 cut(s) 456, 552
DinI GGCGCC 1 cut(s) 462
EaeI YGGCCR 3 cut(s) 59, 71, 282
EagI CGGCCG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EclXI CGGCCG 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 383, 921
Eco24I GRGCYC 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 887, 935
Eco52I CGGCCG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 887
EcoRII CCWGG 3 cut(s) 446, 1071, 1242
EcoRV GATATC 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 383, 921
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 328
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 383, 921
Esp3I CGTCTC 2 cut(s) 108, 166
FaqI GGGAC 2 cut(s) 900, 921
FauI CCCGC 1 cut(s) 991
FbaI TGATCA 2 cut(s) 207, 423
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 6 cut(s) 282, 534, 696, 903, 1041, 1209
FokI GGATG 1 cut(s) 1048
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 6 cut(s) 282, 534, 696, 903, 1041, 1209
FspBI CTAG 2 cut(s) 165, 1091
GlaI GCGC 2 cut(s) 462, 927
GluI GCNGC 6 cut(s) 282, 534, 696, 903, 1041, 1209
GsaI CCCAGC 1 cut(s) 632
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 4 cut(s) 61, 73, 284, 740
HapII CCGG 2 cut(s) 26, 58
HhaI GCGC 2 cut(s) 463, 928
Hin1I GRCGYC 1 cut(s) 461
Hin6I GCGC 2 cut(s) 461, 926
HinP1I GCGC 2 cut(s) 461, 926
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 2 cut(s) 635, 729
HpaII CCGG 2 cut(s) 26, 58
HphI GGTGA 1 cut(s) 562
Hpy166II GTNNAC 2 cut(s) 390, 655
Hpy188I TCNGA 7 cut(s) 241, 277, 330, 702, 728, 770, 1226
Hpy188III TCNNGA 3 cut(s) 583, 1004, 1019
Hpy8I GTNNAC 2 cut(s) 390, 655
HpyAV CCTTC 6 cut(s) 352, 481, 649, 781, 790, 1240
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4IV ACGT 2 cut(s) 159, 1138
HpyCH4V TGCA 8 cut(s) 82, 94, 157, 536, 560, 872, 1028, 1217
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 106, 227, 250, 1205, 1214
HpyF3I CTNAG 2 cut(s) 456, 552
HpySE526I ACGT 2 cut(s) 159, 1138
Hsp92I GRCGYC 1 cut(s) 461
HspAI GCGC 2 cut(s) 461, 926
KasI GGCGCC 1 cut(s) 460
KflI GGGWCCC 1 cut(s) 887
Ksp22I TGATCA 2 cut(s) 207, 423
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 1205
Lsp1109I GCAGC 5 cut(s) 520, 682, 914, 1052, 1195
MabI ACCWGGT 1 cut(s) 1071
MaeI CTAG 2 cut(s) 165, 1091
MaeII ACGT 2 cut(s) 159, 1138
MboII GAAGA 4 cut(s) 127, 307, 757, 1045
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 2 cut(s) 86, 1098
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 7 cut(s) 519, 712, 820, 855, 873, 930, 1218
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 1 cut(s) 644
MnlI CCTC 9 cut(s) 162, 220, 271, 403, 451, 612, 668, 877, 1168
Mph1103I ATGCAT 1 cut(s) 1030
MseI TTAA 2 cut(s) 711, 717
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 905
MspI CCGG 2 cut(s) 26, 58
MspR9I CCNGG 4 cut(s) 26, 448, 1073, 1244
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 3 cut(s) 448, 1073, 1244
MwoI GCNNNNNNNGC 6 cut(s) 79, 106, 227, 250, 1205, 1214
NarI GGCGCC 1 cut(s) 461
NciI CCSGG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 921
NlaIV GGNNCC 8 cut(s) 462, 623, 739, 888, 889, 937, 966, 1228
NmeAIII GCCGAG 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 1030
NspI RCATGY 3 cut(s) 414, 530, 1087
PagI TCATGA 1 cut(s) 1003
PciI ACATGT 2 cut(s) 526, 1083
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 729
PflMI CCANNNNNTGG 2 cut(s) 677, 897
PkrI GCNGC 6 cut(s) 283, 535, 697, 904, 1042, 1210
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 643
PluTI GGCGCC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 643
PpuMI RGGWCCY 1 cut(s) 887
PscI ACATGT 2 cut(s) 526, 1083
Psp5II RGGWCCY 1 cut(s) 887
Psp6I CCWGG 3 cut(s) 446, 1071, 1242
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 3 cut(s) 446, 1071, 1242
PspN4I GGNNCC 8 cut(s) 462, 623, 739, 888, 889, 937, 966, 1228
PspPI GGNCC 3 cut(s) 738, 887, 935
PspPPI RGGWCCY 1 cut(s) 887
PsuI RGATCY 2 cut(s) 86, 1098
PvuI CGATCG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 2 cut(s) 144, 374
RsaNI GTAC 2 cut(s) 143, 373
RseI CAYNNNNRTG 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 711, 717
SatI GCNGC 6 cut(s) 282, 534, 696, 903, 1041, 1209
Sau96I GGNCC 3 cut(s) 738, 887, 935
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 4 cut(s) 26, 448, 1073, 1244
SduI GDGCHC 1 cut(s) 328
SexAI ACCWGGT 1 cut(s) 1071
SfoI GGCGCC 1 cut(s) 462
SinI GGWCC 2 cut(s) 887, 935
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 7 cut(s) 519, 712, 820, 855, 873, 930, 1218
SsiI CCGC 3 cut(s) 281, 813, 984
SspDI GGCGCC 1 cut(s) 460
SspI AATATT 1 cut(s) 346
SspMI CTAG 2 cut(s) 165, 1091
StyD4I CCNGG 4 cut(s) 24, 446, 1071, 1242
StyI CCWWGG 2 cut(s) 383, 921
TaaI ACNGT 1 cut(s) 541
TaiI ACGT 2 cut(s) 162, 1141
TaqI TCGA 4 cut(s) 196, 249, 271, 617
TasI AATT 7 cut(s) 519, 712, 820, 855, 873, 930, 1218
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 729
Tru1I TTAA 2 cut(s) 711, 717
Tru9I TTAA 2 cut(s) 711, 717
TseI GCWGC 5 cut(s) 533, 695, 902, 1040, 1208
TspDTI ATGAA 5 cut(s) 721, 809, 833, 1020, 1148
TspGWI ACGGA 1 cut(s) 957
Van91I CCANNNNNTGG 2 cut(s) 677, 897
VpaK11BI GGWCC 2 cut(s) 887, 935
XceI RCATGY 3 cut(s) 414, 530, 1087
XcmI CCANNNNNNNNNTGG 2 cut(s) 403, 472
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 165, 1091
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.