Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015019

Physical Location & Seq

Genomic Coordinates Forward (+)

28802251 .. 28807412

Gene Structure 5162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGATCTGCTCTGTGAAGCAATACACCGGCGTGACAAATGGGTCCGACATCTTTTTACGGCGGAGCACACGACCGCCGCCGGTGCAACGATCGCTGTTTCTGCCCTCTCTTCCGGCGCACCAGCCTCAGAGATCAGGAATCTCGGTGCAAAAGGCCTTGCACGTATCTGCGATCGCCACCCTCGGAGCTTTGCCGAAGCCGACTCGAATGAGTGTGGTTAAATGTCAGGCGTTCGAGGCTGACCGATCGCAGCCGATCGAGTCCAGCGTCGAGCTTCCCAAAGTCGATGCTAAACTGGAGGCGGCGAAGAAGCTGAAGATCGGCGTGTATTTTGCTATGTGGTGGGCGCTGAACGTGGTGTTCAATATATACAACAAGAAGGTGTTGAATGCTTACCCTTTCCCATGGCTGACCTCCACCCTGTCTCTGGCATGTGGGTCTTTGATCATGCTGGTATCTTGGGCCACCAGGATTGCTGAGGCCCCCAAAGTTGATATGGAGTTCTGGAAAGCTCTGTTTCCTGTTGCTGTGGCGCATACGATTGGGCATGTAGCAGCTACTGTTAGTATGTCTAAGGTTGCAGTTTCTTTCACCCATATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTATTGGTTTCGAGGTTCTTGCTGGGCGAGTCCTTCCCTACATCGGTCTACCTGTCCCTCCTTCCAATCATCGGTGGTTGCGGTCTTGCTGCCTTGACAGAGCTTAACTTTAACATGATAGGATTCATGGGGGCCATGATATCAAACTTGGCATTTGTATTTCGGAACATATTTTCAAAGAAGGGAATGAAGGGGAAGTCTGTTAGCGGAATGAACTATTATGCTCTTCTATCCATTATGTCTCTAGTAATTCTCACACCATTTGCGATTGCGGTGGAGGGACCACAGATGTGGAAAGCTGGATTTGATTCAGCATTTGCTCAAATTGGACCCAACTTGATATGGTGGATGGCGGCCCAGAGTGTCTTCTATCATCTCTACAACCAAGTGTCATACATGTCCTTGGACGAGATTTCTCCCTTGACATTTAGCATAGGAAACACCATGAAACGTATATCCGTCATAGTATCCTCCATCATCATATTCCGCACACCTGTCCAGCCCGTCAATGCCCTTGGAGCTGCTATTGCAATTTTCGGAACCTTCTTGTATTCCCAGGCGAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

399

Amino Acids

43.54

Weight (kDa)

9.78

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	105 - 394	2.7e-116	Triose-phosphate Transporter family
EamA	PF00892	112 - 238	1.9e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54800
fragaria_vesca	FvH4_3g22090 FvH4_3g22090
malus_domestica	MD03G1208900.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1 Prupe.4G207800_v2.0.a1
pyrus_communis	pycom03g15790 pycom11g19730
rosa_chinensis	RchiOBHm_Chr5g0037901
rosa_laevigata	RLG00000033821
rosa_multiflora	Rmu_sc0005416.1_g000038
rosa_roxburghii	Rroxscaffold_1G00043000
rosa_rugosa	Rorug05G0168800
rosa_samantha	Rh5AG257500 Rh5BG260100
rosa_wichuraiana	Rw5G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	9 cut(s)	61, 74, 77, 302, 708, 834, 899, 980, 1114
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	427, 670, 698
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	3 cut(s)	364, 388, 804
AjnI	CCWGG	2 cut(s)	467, 1182
AleI	CACNNNNGTG	2 cut(s)	29, 916
AluBI	AGCT	9 cut(s)	188, 274, 313, 512, 557, 620, 730, 926, 1148
AluI	AGCT	9 cut(s)	188, 274, 313, 512, 557, 620, 730, 926, 1148
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	429, 873
AlwNI	CAGNNNCTG	1 cut(s)	560
AoxI	GGCC	5 cut(s)	153, 462, 480, 759, 981
ApeKI	GCWGC	4 cut(s)	250, 554, 716, 1148
AsiSI	GCGATCGC	1 cut(s)	174
AspLEI	GCGC	3 cut(s)	118, 349, 535
AspS9I	GGNCC	7 cut(s)	42, 462, 481, 759, 908, 956, 982
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	3 cut(s)	42, 908, 956
BbsI	GAAGAC	1 cut(s)	985
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	4 cut(s)	262, 566, 703, 1135
BccI	CCATC	2 cut(s)	970, 1109
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciT130I	CCWGG	2 cut(s)	469, 1184
BciVI	GTATCC	1 cut(s)	1105
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	429, 873
BfaI	CTAG	1 cut(s)	872
BfoI	RGCGCY	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	1105
BisI	GCNGC	7 cut(s)	77, 251, 303, 555, 717, 981, 1149
BlsI	GCNGC	7 cut(s)	78, 252, 304, 556, 718, 982, 1150
Bme1390I	CCNGG	2 cut(s)	469, 1184
Bme18I	GGWCC	3 cut(s)	42, 908, 956
BmgT120I	GGNCC	7 cut(s)	42, 462, 481, 759, 908, 956, 982
BmiI	GGNNCC	6 cut(s)	43, 483, 760, 909, 958, 1168
BmrFI	CCNGG	2 cut(s)	469, 1184
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	985
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	163
BsaJI	CCNNGG	5 cut(s)	181, 404, 1029, 1141, 1182
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 670, 698
Bse118I	RCCGGY	2 cut(s)	26, 79
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	469, 1184
BseDI	CCNNGG	5 cut(s)	181, 404, 1029, 1141, 1182
BseGI	GGATG	1 cut(s)	981
BseLI	CCNNNNNNNGG	3 cut(s)	427, 670, 698
BseMII	CTCAG	2 cut(s)	140, 468
BseNI	ACTGG	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	262, 566, 703, 1135
BseYI	CCCAGC	1 cut(s)	649
Bsh1285I	CGRYCG	5 cut(s)	74, 92, 174, 248, 258
BshFI	GGCC	5 cut(s)	155, 464, 482, 761, 983
BsiEI	CGRYCG	5 cut(s)	74, 92, 174, 248, 258
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	27, 80, 113
BslFI	GGGAC	2 cut(s)	667, 921
BslI	CCNNNNNNNGG	3 cut(s)	427, 670, 698
BsmAI	GTCTC	2 cut(s)	429, 873
BsmFI	GGGAC	2 cut(s)	667, 921
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	5 cut(s)	155, 464, 482, 761, 983
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	9 cut(s)	61, 74, 77, 302, 708, 834, 899, 980, 1114
BspANI	GGCC	5 cut(s)	155, 464, 482, 761, 983
BspCNI	CTCAG	2 cut(s)	139, 469
BspLI	GGNNCC	6 cut(s)	43, 483, 760, 909, 958, 1168
BspQI	GCTCTTC	1 cut(s)	858
BsrFI	RCCGGY	2 cut(s)	26, 79
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	2 cut(s)	26, 79
BssECI	CCNNGG	5 cut(s)	181, 404, 1029, 1141, 1182
BssMI	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
BssT1I	CCWWGG	3 cut(s)	404, 1029, 1141
Bst2UI	CCWGG	2 cut(s)	469, 1184
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	2 cut(s)	114, 858
BstBAI	YACGTR	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	126, 477, 573
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	981
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	3 cut(s)	118, 349, 535
BstKTI	GATC	8 cut(s)	6, 92, 134, 174, 248, 258, 321, 447
BstMAI	GTCTC	2 cut(s)	429, 873
BstMBI	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
BstMCI	CGRYCG	5 cut(s)	74, 92, 174, 248, 258
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 91, 100, 236, 1145, 1154
BstNI	CCWGG	2 cut(s)	469, 1184
BstNSI	RCATGY	3 cut(s)	435, 551, 1027
BstSCI	CCNGG	2 cut(s)	467, 1182
BstV1I	GCAGC	4 cut(s)	262, 566, 703, 1135
BstV2I	GAAGAC	1 cut(s)	985
BstXI	CCANNNNNNTGG	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	1105
BsuRI	GGCC	5 cut(s)	155, 464, 482, 761, 983
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	981
BtsIMutI	CAGTG	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	3 cut(s)	118, 349, 535
Cfr10I	RCCGGY	2 cut(s)	26, 79
Cfr13I	GGNCC	7 cut(s)	42, 462, 481, 759, 908, 956, 982
CseI	GACGC	1 cut(s)	256
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	9 cut(s)	405, 432, 448, 548, 742, 754, 763, 1024, 1072
DdeI	CTNAG	3 cut(s)	126, 477, 573
DpnI	GATC	8 cut(s)	5, 91, 133, 173, 247, 257, 320, 446
DpnII	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	114, 858
EarI	CTCTTC	2 cut(s)	114, 858
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	3 cut(s)	404, 1029, 1141
Eco147I	AGGCCT	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	3 cut(s)	42, 908, 956
Eco57I	CTGAAG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	467, 1182
EcoRV	GATATC	1 cut(s)	768
EcoT14I	CCWWGG	3 cut(s)	404, 1029, 1141
ErhI	CCWWGG	3 cut(s)	404, 1029, 1141
FaeI	CATG	9 cut(s)	408, 435, 451, 551, 745, 757, 766, 1027, 1075
FaqI	GGGAC	2 cut(s)	667, 921
FatI	CATG	9 cut(s)	404, 431, 447, 547, 741, 753, 762, 1023, 1071
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	7 cut(s)	77, 251, 303, 555, 717, 981, 1149
FokI	GGATG	1 cut(s)	988
Fsp4HI	GCNGC	7 cut(s)	77, 251, 303, 555, 717, 981, 1149
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	3 cut(s)	117, 348, 534
GluI	GCNGC	7 cut(s)	77, 251, 303, 555, 717, 981, 1149
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	5 cut(s)	155, 464, 482, 761, 983
HapII	CCGG	3 cut(s)	27, 80, 113
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	3 cut(s)	118, 349, 535
Hin1II	CATG	9 cut(s)	408, 435, 451, 551, 745, 757, 766, 1027, 1075
Hin6I	GCGC	3 cut(s)	116, 347, 533
HinP1I	GCGC	3 cut(s)	116, 347, 533
HinfI	GANTC	6 cut(s)	138, 202, 260, 656, 750, 935
HpaII	CCGG	3 cut(s)	27, 80, 113
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	5 cut(s)	46, 129, 185, 792, 1166
Hpy188III	TCNNGA	3 cut(s)	135, 505, 604
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	6 cut(s)	373, 670, 698, 802, 811, 1180
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	3 cut(s)	162, 354, 1078
HpyCH4V	TGCA	5 cut(s)	85, 148, 160, 581, 1157
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 91, 100, 236, 1145, 1154
HpyF3I	CTNAG	3 cut(s)	126, 477, 573
HpySE526I	ACGT	3 cut(s)	162, 354, 1078
Hsp92II	CATG	9 cut(s)	408, 435, 451, 551, 745, 757, 766, 1027, 1075
HspAI	GCGC	3 cut(s)	116, 347, 533
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	3 cut(s)	63, 185, 1145
Lsp1109I	GCAGC	4 cut(s)	262, 566, 703, 1135
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	3 cut(s)	162, 354, 1078
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	8 cut(s)	5, 91, 133, 173, 247, 257, 320, 446
MboI	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
MboII	GAAGA	5 cut(s)	101, 319, 328, 845, 985
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	3 cut(s)	876, 951, 1158
MlyI	GAGTC	3 cut(s)	196, 269, 665
MmeI	TCCRAC	1 cut(s)	69
MseI	TTAA	3 cut(s)	219, 732, 738
MslI	CAYNNNNRTG	2 cut(s)	29, 916
MspI	CCGG	3 cut(s)	27, 80, 113
MspR9I	CCNGG	2 cut(s)	469, 1184
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	469, 1184
MwoI	GCNNNNNNNGC	6 cut(s)	82, 91, 100, 236, 1145, 1154
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
NlaIII	CATG	9 cut(s)	408, 435, 451, 551, 745, 757, 766, 1027, 1075
NlaIV	GGNNCC	6 cut(s)	43, 483, 760, 909, 958, 1168
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	3 cut(s)	435, 551, 1027
OliI	CACNNNNGTG	2 cut(s)	29, 916
PceI	AGGCCT	1 cut(s)	155
PciI	ACATGT	1 cut(s)	1023
PciSI	GCTCTTC	1 cut(s)	858
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	138, 750, 935
PkrI	GCNGC	7 cut(s)	78, 252, 304, 556, 718, 982, 1150
Ple19I	CGATCG	4 cut(s)	92, 174, 248, 258
PleI	GAGTC	3 cut(s)	196, 268, 664
PpsI	GAGTC	3 cut(s)	196, 268, 664
Ppu21I	YACGTR	1 cut(s)	163
PscI	ACATGT	1 cut(s)	1023
Psp6I	CCWGG	2 cut(s)	467, 1182
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	467, 1182
PspN4I	GGNNCC	6 cut(s)	43, 483, 760, 909, 958, 1168
PspPI	GGNCC	7 cut(s)	42, 462, 481, 759, 908, 956, 982
PstNI	CAGNNNCTG	1 cut(s)	560
PvuI	CGATCG	4 cut(s)	92, 174, 248, 258
RgaI	GCGATCGC	1 cut(s)	174
RseI	CAYNNNNRTG	2 cut(s)	29, 916
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	219, 732, 738
SatI	GCNGC	7 cut(s)	77, 251, 303, 555, 717, 981, 1149
Sau3AI	GATC	8 cut(s)	3, 89, 131, 171, 245, 255, 318, 444
Sau96I	GGNCC	7 cut(s)	42, 462, 481, 759, 908, 956, 982
SchI	GAGTC	3 cut(s)	196, 269, 665
ScrFI	CCNGG	2 cut(s)	469, 1184
SduI	GDGCHC	1 cut(s)	68
SfaAI	GCGATCGC	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	277
SgfI	GCGATCGC	1 cut(s)	174
SgrAI	CRCCGGYG	2 cut(s)	26, 79
SinI	GGWCC	3 cut(s)	42, 908, 956
SmiMI	CAYNNNNRTG	2 cut(s)	29, 916
Sse9I	AATT	3 cut(s)	876, 951, 1158
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	9 cut(s)	61, 74, 77, 302, 708, 834, 899, 980, 1114
SspMI	CTAG	1 cut(s)	872
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	467, 1182
StyI	CCWWGG	3 cut(s)	404, 1029, 1141
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	3 cut(s)	165, 357, 1081
TaqI	TCGA	6 cut(s)	205, 234, 258, 270, 285, 638
TaqII	GACCGA	2 cut(s)	258, 661
TasI	AATT	3 cut(s)	876, 951, 1158
TauI	GCSGC	3 cut(s)	79, 305, 983
TfiI	GAWTC	3 cut(s)	138, 750, 935
Tru1I	TTAA	3 cut(s)	219, 732, 738
Tru9I	TTAA	3 cut(s)	219, 732, 738
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	4 cut(s)	250, 554, 716, 1148
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	742, 830, 854, 1088
TspGWI	ACGGA	1 cut(s)	1075
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	3 cut(s)	42, 908, 956
XceI	RCATGY	3 cut(s)	435, 551, 1027
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 493
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.