FvH4_3g22210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012532
Physical Location & Seq
Reverse (-)
15224953 .. 15225453
501 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22210.t1

Sequence Viewer

Length: 501 bp
ATGGTTCAGAAGCTTGAAGCTATAAAGGGTGGTGGAGGATCCATCAGGGTAGGGGCCACCGGGACTGTCAGTTCCCTAATGACAAGAGAACTAGAATCCAGCAAGGTTGAACCTCCGACGTCTACAGCTTCTTCCCGAAATAAACATCAAACAGCTCCTGTTTCTATTCCATGTGGTGTTCCTACTCCAAAAAAGCTACCAAGGAAGTCATCTGATGAAGCCAGCAGCAGTGGAACCAGCACCTACATTAATCAGAGACACCCTGACATTCCCCAGAAACCGAAAACTCATCTGAAAACTACTAGTCAAATCCCAATGCTCGACCCTCACAATTTTGGGATGGATAAAACTCCAATTAGGCAGAAAGCTAACAAGAAAGGACCTAACATTGTTGAAGTTGTGGACATCAAATGTGGGGGATCAGGTAGAGCTTGGGCTGGCCCTGTAACGAACCGGCTCAAGAAGCTGGGCTTCTCAAAGCTCTCTGAGAGTGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.7

Weight (kDa)

10.14

Isoelectric Point (pI)

28.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54850
fragaria_vesca FvH4_3g22210
malus_domestica MD11G1222100.v1.1
prunus_persica Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis pycom11g19590
rosa_chinensis RchiOBHm_Chr5g0038281
rosa_laevigata RLG00000033842
rosa_multiflora Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii Rroxscaffold_1G00042770
rosa_rugosa Rorug05G0171600
rosa_samantha Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana Rw5G024240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 122
AclWI GGATC 3 cut(s) 33, 46, 427
AcyI GRCGYC 1 cut(s) 119
AgsI TTSAA 3 cut(s) 17, 110, 395
AhlI ACTAGT 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 9 cut(s) 13, 20, 128, 155, 196, 368, 431, 466, 481
AluI AGCT 9 cut(s) 13, 20, 128, 155, 196, 368, 431, 466, 481
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 3 cut(s) 33, 46, 427
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 54, 439
ApeKI GCWGC 1 cut(s) 225
AseI ATTAAT 1 cut(s) 249
AspS9I GGNCC 3 cut(s) 54, 380, 440
AsuC2I CCSGG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 380
BamHI GGATCC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 50, 334
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 92, 303
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 3 cut(s) 54, 380, 440
BmiI GGNNCC 3 cut(s) 40, 55, 235
BmrFI CCNGG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 345
BseMII CTCAG 1 cut(s) 477
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 466
BshFI GGCC 2 cut(s) 56, 441
BsiSI CCGG 2 cut(s) 60, 454
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 56, 441
Bsp143I GATC 2 cut(s) 38, 419
BspANI GGCC 2 cut(s) 56, 441
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 40, 55, 235
BspPI GGATC 3 cut(s) 33, 46, 427
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 38, 419
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 223, 439
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 2 cut(s) 41, 422
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 38, 419
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 2 cut(s) 56, 441
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 223, 439
CaiI CAGNNNCTG 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 54, 380, 440
CviAII CATG 1 cut(s) 171
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 40, 421
DpnII GATC 2 cut(s) 38, 419
Eco130I CCWWGG 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 1 cut(s) 174
FaiI YATR 2 cut(s) 23, 172
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 170
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 2 cut(s) 92, 303
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 470
HaeIII GGCC 2 cut(s) 56, 441
HapII CCGG 2 cut(s) 60, 454
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 95
HpaII CCGG 2 cut(s) 60, 454
Hpy166II GTNNAC 2 cut(s) 123, 403
Hpy188I TCNGA 6 cut(s) 9, 117, 214, 255, 294, 487
Hpy188III TCNNGA 2 cut(s) 135, 460
Hpy8I GTNNAC 2 cut(s) 123, 403
Hpy99I CGWCG 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 174
Kzo9I GATC 2 cut(s) 38, 419
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 237
MaeI CTAG 2 cut(s) 92, 303
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 445
MalI GATC 2 cut(s) 40, 421
MboI GATC 2 cut(s) 38, 419
MboII GAAGA 1 cut(s) 123
MflI RGATCY 1 cut(s) 38
MluCI AATT 2 cut(s) 331, 354
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 3 cut(s) 29, 123, 336
MseI TTAA 1 cut(s) 249
MspI CCGG 2 cut(s) 60, 454
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 61
NdeII GATC 2 cut(s) 38, 419
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 3 cut(s) 40, 55, 235
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 40, 55, 235
PspPI GGNCC 3 cut(s) 54, 380, 440
PspPPI RGGWCCY 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 38
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 38, 419
Sau96I GGNCC 3 cut(s) 54, 380, 440
ScrFI CCNGG 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 2 cut(s) 331, 354
SspMI CTAG 2 cut(s) 92, 303
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 321
TasI AATT 2 cut(s) 331, 354
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 380
VspI ATTAAT 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 2 cut(s) 92, 303
ZraI GACGTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.