Rroxscaffold_1G00042770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012532
Physical Location & Seq
Forward (+)
61091634 .. 61092131
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042770.1

Sequence Viewer

Length: 498 bp
ATGGTTCAGAAGCTTGAAGCTATAAAGGGTGGTGGAGGATCCATCAGAGTAGGGGCCACTGGGACAGTCAGTTCCCTAATGACAAGAGAACTAGACTCCATCAAGGTTGAACCTCCGATGCCTACAGCTTCTTCCCGAATTAAACATCAAAAAGCTCCTGTTTCTGTTCCATGTGGTGTTCCTACTCCAAAAAAGCTACCAAGGAAATCATCTGACGAAGCCAGCAGCAGTGGAAGCAGCAACTACATGAATCAGAGACACCCTGACATTCCCCAGAAACCGAAAACTCATCTGAAAACTACTAGTCAAATCCCGATGCTCGACTCTCATAATGTTGGTATGGATAAAACTCCTATTAGGCAGAAAGCTAACAAGAAAGGACCTAATATCGTTGAAGTTGTGGACATCAAATGTGGGGGCTCGGGTAGAGCGTGGGGCCCTGTAACGAATCGGCTCAAGAAGCTGAGCTTCTCAAAGCTCTCTGAGAGTGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.68

Weight (kDa)

10.18

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54850
fragaria_vesca FvH4_3g22210
malus_domestica MD11G1222100.v1.1
prunus_persica Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis pycom11g19590
rosa_chinensis RchiOBHm_Chr5g0038281
rosa_laevigata RLG00000033842
rosa_multiflora Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii Rroxscaffold_1G00042770
rosa_rugosa Rorug05G0171600
rosa_samantha Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana Rw5G024240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 33, 46
AgsI TTSAA 3 cut(s) 17, 110, 395
AhlI ACTAGT 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 9 cut(s) 13, 20, 128, 155, 196, 368, 463, 468, 478
AluI AGCT 9 cut(s) 13, 20, 128, 155, 196, 368, 463, 468, 478
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 33, 46
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 2 cut(s) 54, 436
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 225, 237
AspS9I GGNCC 4 cut(s) 54, 380, 436, 437
AvaI CYCGRG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 440
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 2 cut(s) 422, 440
BbvI GCAGC 2 cut(s) 237, 249
BccI CCATC 2 cut(s) 50, 107
BcoDI GTCTC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 92, 303
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 226, 238
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 2 cut(s) 227, 239
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 4 cut(s) 54, 380, 436, 437
BmiI GGNNCC 4 cut(s) 40, 55, 437, 438
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 108, 306
BmuI ACTGGG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 455, 474
BseNI ACTGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 440
BseXI GCAGC 2 cut(s) 237, 249
BshFI GGCC 2 cut(s) 56, 438
BsiHKCI CYCGRG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 56, 438
BsoBI CYCGRG 1 cut(s) 421
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 422, 440
Bsp143I GATC 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 464
BspANI GGCC 2 cut(s) 56, 438
BspCNI CTCAG 2 cut(s) 456, 475
BspLI GGNNCC 4 cut(s) 40, 55, 437, 438
BspPI GGATC 2 cut(s) 33, 46
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 464, 483
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 234, 460
BstSFI CTRYAG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 237, 249
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 2 cut(s) 56, 438
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 57, 235
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 4 cut(s) 54, 380, 436, 437
CviAII CATG 2 cut(s) 171, 247
DdeI CTNAG 2 cut(s) 464, 483
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 422, 440
Eco47I GGWCC 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 421
EcoO109I RGGNCCY 3 cut(s) 380, 436, 437
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 422, 440
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 174, 250
FaiI YATR 5 cut(s) 23, 172, 248, 330, 341
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 170, 246
Fnu4HI GCNGC 2 cut(s) 226, 238
FriOI GRGCYC 2 cut(s) 422, 440
Fsp4HI GCNGC 2 cut(s) 226, 238
FspBI CTAG 2 cut(s) 92, 303
GluI GCNGC 2 cut(s) 226, 238
HaeIII GGCC 2 cut(s) 56, 438
Hin1II CATG 2 cut(s) 174, 250
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 4 cut(s) 95, 250, 323, 448
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 7 cut(s) 9, 47, 117, 214, 255, 294, 484
Hpy188III TCNNGA 3 cut(s) 135, 313, 457
Hpy8I GTNNAC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 460
HpyF3I CTNAG 2 cut(s) 464, 483
Hsp92II CATG 2 cut(s) 174, 250
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 45, 171, 235, 276, 287, 453
Lsp1109I GCAGC 2 cut(s) 237, 249
LweI GCATC 2 cut(s) 108, 306
MaeI CTAG 2 cut(s) 92, 303
MaeIII GTNAC 1 cut(s) 442
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 123
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 422, 440
MluCI AATT 1 cut(s) 138
MlyI GAGTC 2 cut(s) 89, 317
MnlI CCTC 2 cut(s) 29, 123
MseI TTAA 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 234, 460
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 174, 250
NlaIV GGNNCC 4 cut(s) 40, 55, 437, 438
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 2 cut(s) 250, 448
PkrI GCNGC 2 cut(s) 227, 239
PleI GAGTC 2 cut(s) 89, 317
PpsI GAGTC 2 cut(s) 89, 317
PpuMI RGGWCCY 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 40, 55, 437, 438
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 4 cut(s) 54, 380, 436, 437
PspPPI RGGWCCY 1 cut(s) 380
PsuI RGATCY 1 cut(s) 38
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 226, 238
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 4 cut(s) 54, 380, 436, 437
SchI GAGTC 2 cut(s) 89, 317
SduI GDGCHC 2 cut(s) 422, 440
SfaNI GCATC 2 cut(s) 108, 306
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 1 cut(s) 138
SspMI CTAG 2 cut(s) 92, 303
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 138
TfiI GAWTC 2 cut(s) 250, 448
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 2 cut(s) 64, 235
TseI GCWGC 2 cut(s) 225, 237
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 2 cut(s) 64, 235
VpaK11BI GGWCC 1 cut(s) 380
XspI CTAG 2 cut(s) 92, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.