Rorug05G0171600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012532
Physical Location & Seq
Reverse (-)
16022693 .. 16023140
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0171600.1

Sequence Viewer

Length: 348 bp
ATGGGAAGAATCAGGTTCATGGACCTCATGTTTTTGCCCTTCATTATCTTGCTGCCATCAGAGATGCAGGTGCAAGTTGGAGCTGATGAATGTGAGTATCGAAGCGCACATTTCAGGGGGCCCTGCTTCGGACGCAATCACGAGTGCTACATCTGTTGCCAGGAGGAAGGTTTTGATCGGGGCTCATGCAAAGGGTTTCTCAACCGTCATTGTATCTGCACTAAGCCTTGTGGATCACCTGGAGGTCCTCCTACCTACGAACCTCCTCCTCCTCCAGAAGAAGATGTTCCTCCTCCTCCCGAAGAAGATGTTCCTCCTACTCCTGAAGAAGAAGCTCCCATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.88

Weight (kDa)

4.59

Isoelectric Point (pI)

77.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 31 - 77 1.8e-09 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54850
fragaria_vesca FvH4_3g22210
malus_domestica MD11G1222100.v1.1
prunus_persica Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis pycom11g19590
rosa_chinensis RchiOBHm_Chr5g0038281
rosa_laevigata RLG00000033842
rosa_multiflora Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii Rroxscaffold_1G00042770
rosa_rugosa Rorug05G0171600
rosa_samantha Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana Rw5G024240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 241
AcuI CTGAAG 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 128
AjnI CCWGG 2 cut(s) 159, 238
AluBI AGCT 2 cut(s) 83, 335
AluI AGCT 2 cut(s) 83, 335
AlwI GGATC 1 cut(s) 241
AoxI GGCC 1 cut(s) 119
ApaI GGGCCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 52
AseI ATTAAT 1 cut(s) 342
Asp700I GAANNNNTTC 2 cut(s) 285, 309
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 4 cut(s) 22, 119, 120, 245
AsuHPI GGTGA 1 cut(s) 228
AvaII GGWCC 2 cut(s) 22, 245
BaeGI GKGCMC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 123, 185
BauI CACGAG 1 cut(s) 140
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 161, 240
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 161, 240
Bme18I GGWCC 2 cut(s) 22, 245
BmgT120I GGNCC 4 cut(s) 22, 119, 120, 245
BmiI GGNNCC 2 cut(s) 120, 121
BmrFI CCNGG 2 cut(s) 161, 240
BmsI GCATC 1 cut(s) 54
BpmI CTGGAG 2 cut(s) 258, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 161, 240
BseLI CCNNNNNNNGG 1 cut(s) 128
BseRI GAGGAG 5 cut(s) 255, 258, 261, 282, 285
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 202
BshFI GGCC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 1 cut(s) 121
Bsp120I GGGCCC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 123, 185
Bsp143I GATC 2 cut(s) 175, 233
BspANI GGCC 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 120, 121
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 1 cut(s) 241
BssMI GATC 2 cut(s) 175, 233
BssSI CACGAG 1 cut(s) 140
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 161, 240
Bst4CI ACNGT 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 178, 236
BstMBI GATC 2 cut(s) 175, 233
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 161, 240
BstSCI CCNGG 2 cut(s) 159, 238
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 121
BveI ACCTGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 4 cut(s) 22, 119, 120, 245
CseI GACGC 1 cut(s) 141
CviAII CATG 3 cut(s) 19, 28, 186
CviJI RGCY 5 cut(s) 83, 121, 183, 226, 335
CviKI_1 RGCY 5 cut(s) 83, 121, 183, 226, 335
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 177, 235
DpnII GATC 2 cut(s) 175, 233
Eco24I GRGCYC 2 cut(s) 123, 185
Eco47I GGWCC 2 cut(s) 22, 245
Eco57I CTGAAG 1 cut(s) 345
EcoO109I RGGNCCY 3 cut(s) 119, 120, 245
EcoRII CCWGG 2 cut(s) 159, 238
EcoT38I GRGCYC 2 cut(s) 123, 185
FaeI CATG 3 cut(s) 22, 31, 189
FaiI YATR 3 cut(s) 20, 29, 187
FatI CATG 3 cut(s) 18, 27, 185
Fnu4HI GCNGC 1 cut(s) 53
FriOI GRGCYC 2 cut(s) 123, 185
Fsp4HI GCNGC 1 cut(s) 53
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 2 cut(s) 258, 261
HaeIII GGCC 1 cut(s) 121
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 107
Hin1II CATG 3 cut(s) 22, 31, 189
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 61, 131
Hpy188III TCNNGA 4 cut(s) 140, 275, 299, 323
HpyAV CCTTC 2 cut(s) 49, 161
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 4 cut(s) 67, 73, 189, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 3 cut(s) 22, 31, 189
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 175, 233
LmnI GCTCC 2 cut(s) 80, 340
LpnPI CCDG 9 cut(s) 53, 100, 136, 146, 173, 225, 252, 288, 336
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 54
MalI GATC 2 cut(s) 177, 235
MboI GATC 2 cut(s) 175, 233
MboII GAAGA 7 cut(s) 18, 290, 293, 314, 317, 338, 341
MhlI GDGCHC 2 cut(s) 123, 185
MluCI AATT 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 285, 309
MseI TTAA 1 cut(s) 342
MspR9I CCNGG 2 cut(s) 161, 240
MvaI CCWGG 2 cut(s) 161, 240
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 175, 233
NlaIII CATG 3 cut(s) 22, 31, 189
NlaIV GGNNCC 2 cut(s) 120, 121
PaqCI CACCTGC 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 285, 309
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 245
PshBI ATTAAT 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 159, 238
PspGI CCWGG 2 cut(s) 159, 238
PspN4I GGNNCC 2 cut(s) 120, 121
PspOMI GGGCCC 1 cut(s) 119
PspPI GGNCC 4 cut(s) 22, 119, 120, 245
PspPPI RGGWCCY 1 cut(s) 245
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 175, 233
Sau96I GGNCC 4 cut(s) 22, 119, 120, 245
ScrFI CCNGG 2 cut(s) 161, 240
SduI GDGCHC 2 cut(s) 123, 185
SfaNI GCATC 1 cut(s) 54
SinI GGWCC 2 cut(s) 22, 245
Sse9I AATT 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 159, 238
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 100
TasI AATT 1 cut(s) 343
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 7, 31, 102
VpaK11BI GGWCC 2 cut(s) 22, 245
VspI ATTAAT 1 cut(s) 342
XmnI GAANNNNTTC 2 cut(s) 285, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.