Prupe.4G209200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012532
Physical Location & Seq
Reverse (-)
13036219 .. 13039104
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G209200.3

Sequence Viewer

Length: 519 bp
ATGGAGACTAGAACAAACATGGTTCAGACACTGGAAGCTATAAAGGGTGGTGGAGGATCCATCAGGGTTGGGACCACTGGGACGGTCAGTTCCCTAATGACAAGAGAATTAGAGTCCATCAAAGTTGCACCTCCGACGCCTGCATCTTCCAGAAGTAAACATCAAACAGCTTCTGTTTCTGTTCCCTGTGGTGCTACTACTCCGAAAAAGCTACAACCAAAAAAATCATGTGATGAAGCTAGCAGCAGTGGAACCAGCAACTACATTAATCAGAGACGCCCTGAAATTTCACAGAAAACAAAAACTCATGCTAAAAAGACTAGTCAGATCCCGATATTGAGCTCTGATAATGTTGGCCTGGATAGAACTCCTGGTAGGCAGAAAACTAGTAAAAAAGGACCTAACATTGTTGAAGTTGTGGACTTAAAATGTGGGAACTCAGATAGAGCATGGGCTGGCAATATAACGAATCGACTGAAGAAGCTGGGCTTCTCAAAGCTCTCTGAGAGCATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.36

Weight (kDa)

10.14

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54850
fragaria_vesca FvH4_3g22210
malus_domestica MD11G1222100.v1.1
prunus_persica Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis pycom11g19590
rosa_chinensis RchiOBHm_Chr5g0038281
rosa_laevigata RLG00000033842
rosa_multiflora Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii Rroxscaffold_1G00042770
rosa_rugosa Rorug05G0171600
rosa_samantha Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana Rw5G024240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 51, 64, 322
AcsI RAATTY 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 2 cut(s) 137, 277
AgsI TTSAA 1 cut(s) 413
AhlI ACTAGT 2 cut(s) 320, 386
AjnI CCWGG 2 cut(s) 357, 370
AloI GAACNNNNNNTCC 2 cut(s) 73, 105
AluBI AGCT 7 cut(s) 38, 170, 211, 239, 342, 484, 499
AluI AGCT 7 cut(s) 38, 170, 211, 239, 342, 484, 499
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 3 cut(s) 51, 64, 322
AlwNI CAGNNNCTG 2 cut(s) 31, 173
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 285
AseI ATTAAT 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 72, 398
AsuNHI GCTAGC 1 cut(s) 239
AvaII GGWCC 2 cut(s) 72, 398
BamHI GGATCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 68, 125
BciT130I CCWGG 2 cut(s) 359, 372
BcoDI GTCTC 1 cut(s) 268
BcuI ACTAGT 2 cut(s) 320, 386
BfaI CTAG 4 cut(s) 9, 240, 321, 387
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 359, 372
Bme18I GGWCC 2 cut(s) 72, 398
BmgT120I GGNCC 2 cut(s) 72, 398
BmiI GGNNCC 3 cut(s) 58, 73, 253
BmrFI CCNGG 2 cut(s) 359, 372
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 152
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 137, 277
Bse1I ACTGG 2 cut(s) 36, 82
BseBI CCWGG 2 cut(s) 359, 372
BseMII CTCAG 2 cut(s) 453, 495
BseNI ACTGG 2 cut(s) 36, 82
BseXI GCAGC 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 344
BslFI GGGAC 2 cut(s) 85, 94
BsmAI GTCTC 1 cut(s) 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 2 cut(s) 85, 94
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 56, 327
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 2 cut(s) 452, 496
BspLI GGNNCC 3 cut(s) 58, 73, 253
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 3 cut(s) 51, 64, 322
BsrI ACTGG 2 cut(s) 36, 82
BssMI GATC 2 cut(s) 56, 327
BssNI GRCGYC 2 cut(s) 137, 277
Bst2UI CCWGG 2 cut(s) 359, 372
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 2 cut(s) 137, 277
BstC8I GCNNGC 3 cut(s) 141, 241, 457
BstDEI CTNAG 2 cut(s) 439, 504
BstKTI GATC 2 cut(s) 59, 330
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 56, 327
BstNI CCWGG 2 cut(s) 359, 372
BstSCI CCNGG 2 cut(s) 357, 370
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 56, 327
BstYI RGATCY 2 cut(s) 56, 327
BsuRI GGCC 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 3 cut(s) 29, 75, 253
Cac8I GCNNGC 3 cut(s) 141, 241, 457
CaiI CAGNNNCTG 2 cut(s) 31, 173
Cfr13I GGNCC 2 cut(s) 72, 398
CseI GACGC 2 cut(s) 145, 285
CviAII CATG 4 cut(s) 19, 228, 308, 450
DdeI CTNAG 2 cut(s) 439, 504
DpnI GATC 2 cut(s) 58, 329
DpnII GATC 2 cut(s) 56, 327
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 72, 398
Eco53kI GAGCTC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 357, 370
EcoT38I GRGCYC 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 4 cut(s) 22, 231, 311, 453
FaiI YATR 6 cut(s) 20, 41, 229, 309, 451, 464
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 2 cut(s) 85, 94
FatI CATG 4 cut(s) 18, 227, 307, 449
Fnu4HI GCNGC 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 4 cut(s) 9, 240, 321, 387
GluI GCNGC 1 cut(s) 244
GsaI CCCAGC 1 cut(s) 488
HaeIII GGCC 1 cut(s) 357
HgaI GACGC 2 cut(s) 145, 285
Hin1I GRCGYC 2 cut(s) 137, 277
Hin1II CATG 4 cut(s) 22, 231, 311, 453
HinfI GANTC 2 cut(s) 113, 469
Hpy166II GTNNAC 2 cut(s) 158, 421
Hpy188I TCNGA 8 cut(s) 27, 135, 204, 273, 327, 346, 442, 505
Hpy188III TCNNGA 2 cut(s) 150, 331
Hpy8I GTNNAC 2 cut(s) 158, 421
Hpy99I CGWCG 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 128, 143
HpyF3I CTNAG 2 cut(s) 439, 504
Hsp92I GRCGYC 2 cut(s) 137, 277
Hsp92II CATG 4 cut(s) 22, 231, 311, 453
Kzo9I GATC 2 cut(s) 56, 327
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 152
MaeI CTAG 4 cut(s) 9, 240, 321, 387
MalI GATC 2 cut(s) 58, 329
MboI GATC 2 cut(s) 56, 327
MboII GAAGA 2 cut(s) 138, 490
MflI RGATCY 2 cut(s) 56, 327
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 2 cut(s) 107, 285
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 2 cut(s) 47, 141
MseI TTAA 2 cut(s) 267, 425
MspR9I CCNGG 2 cut(s) 359, 372
MvaI CCWGG 2 cut(s) 359, 372
NdeII GATC 2 cut(s) 56, 327
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 4 cut(s) 22, 231, 311, 453
NlaIV GGNNCC 3 cut(s) 58, 73, 253
PfeI GAWTC 1 cut(s) 469
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 357, 370
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 357, 370
PspN4I GGNNCC 3 cut(s) 58, 73, 253
PspPI GGNCC 2 cut(s) 72, 398
PspPPI RGGWCCY 1 cut(s) 398
PstNI CAGNNNCTG 2 cut(s) 31, 173
PsuI RGATCY 2 cut(s) 56, 327
SacI GAGCTC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 267, 425
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 56, 327
Sau96I GGNCC 2 cut(s) 72, 398
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 359, 372
SduI GDGCHC 1 cut(s) 344
SetI ASST 9 cut(s) 40, 133, 172, 213, 241, 344, 403, 486, 501
SfaNI GCATC 1 cut(s) 152
SinI GGWCC 2 cut(s) 72, 398
SpeI ACTAGT 2 cut(s) 320, 386
Sse9I AATT 2 cut(s) 107, 285
SspMI CTAG 4 cut(s) 9, 240, 321, 387
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 357, 370
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 472
TasI AATT 2 cut(s) 107, 285
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 2 cut(s) 267, 425
Tru9I TTAA 2 cut(s) 267, 425
TscAI CASTG 3 cut(s) 36, 82, 253
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 3 cut(s) 36, 82, 253
VpaK11BI GGWCC 2 cut(s) 72, 398
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 1 cut(s) 285
XspI CTAG 4 cut(s) 9, 240, 321, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.