Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012148.1

Orthogroup ID

OG0012532

Physical Location & Seq

Genomic Coordinates Forward (+)

9301 .. 9801

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012148.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggttcagaagcttgaagctataaagggtggtggaggatccatcagggtaggggccactgggacagtcagttccctaatgacaagagaactagactccatcaaggttgaacctccgatgcctatagcttcttcccgaattaaacatcaaacagctcctgtttctgttccatgtggtgttcctactccaaaaaagctaccaaggaagtcatctgacgaagccagcagcagtggaagcagcaaccacatgaatcagagacaccctgacattccccagaaaccgaaaactcatctgaaaactactagtcaaatcccgatgctcgactctcataatattggtatggataaaactcctattaggcagaaagctaacaagaaaggacctaatatcgttgaagttgtggacatcaaatgtgggggctcgggtagagcgtgggctggccctgtaacgaatcggctcaagaagctgagcttctcaaagctctctgagagtgttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

17.72

Weight (kDa)

10.2

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54850
fragaria_vesca	FvH4_3g22210
malus_domestica	MD11G1222100.v1.1
prunus_persica	Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis	pycom11g19590
rosa_chinensis	RchiOBHm_Chr5g0038281
rosa_laevigata	RLG00000033842
rosa_multiflora	Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042770
rosa_rugosa	Rorug05G0171600
rosa_samantha	Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana	Rw5G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	33, 46
AgsI	TTSAA	3 cut(s)	17, 110, 395
AhlI	ACTAGT	1 cut(s)	302
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	9 cut(s)	13, 20, 128, 155, 196, 368, 466, 471, 481
AluI	AGCT	9 cut(s)	13, 20, 128, 155, 196, 368, 466, 471, 481
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	33, 46
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	2 cut(s)	54, 439
ApeKI	GCWGC	2 cut(s)	225, 237
AspS9I	GGNCC	3 cut(s)	54, 380, 440
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	380
BamHI	GGATCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	237, 249
BccI	CCATC	2 cut(s)	50, 107
BcoDI	GTCTC	1 cut(s)	250
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	2 cut(s)	92, 303
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	226, 238
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	227, 239
Bme18I	GGWCC	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	54, 380, 440
BmiI	GGNNCC	2 cut(s)	40, 55
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	108, 306
BmuI	ACTGGG	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	458, 477
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	237, 249
BshFI	GGCC	2 cut(s)	56, 441
BsiHKCI	CYCGRG	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	56, 441
BsoBI	CYCGRG	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	1 cut(s)	38
Bsp1720I	GCTNAGC	1 cut(s)	467
BspANI	GGCC	2 cut(s)	56, 441
BspCNI	CTCAG	2 cut(s)	459, 478
BspLI	GGNNCC	2 cut(s)	40, 55
BspPI	GGATC	2 cut(s)	33, 46
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	223, 439
BstDEI	CTNAG	2 cut(s)	467, 486
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 463
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	237, 249
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	56, 441
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	57, 235
Cac8I	GCNNGC	2 cut(s)	223, 439
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	54, 380, 440
CviAII	CATG	2 cut(s)	171, 247
DdeI	CTNAG	2 cut(s)	467, 486
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	174, 250
FaiI	YATR	6 cut(s)	23, 125, 172, 248, 330, 341
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	170, 246
Fnu4HI	GCNGC	2 cut(s)	226, 238
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	226, 238
FspBI	CTAG	2 cut(s)	92, 303
GluI	GCNGC	2 cut(s)	226, 238
HaeIII	GGCC	2 cut(s)	56, 441
Hin1II	CATG	2 cut(s)	174, 250
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	4 cut(s)	95, 250, 323, 451
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	6 cut(s)	9, 117, 214, 255, 294, 487
Hpy188III	TCNNGA	3 cut(s)	135, 313, 460
Hpy8I	GTNNAC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 463
HpyF3I	CTNAG	2 cut(s)	467, 486
Hsp92II	CATG	2 cut(s)	174, 250
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	31, 45, 171, 235, 276, 287, 423, 456
Lsp1109I	GCAGC	2 cut(s)	237, 249
LweI	GCATC	2 cut(s)	108, 306
MaeI	CTAG	2 cut(s)	92, 303
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	123
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	89, 317
MnlI	CCTC	2 cut(s)	29, 123
MseI	TTAA	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	234, 463
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	174, 250
NlaIV	GGNNCC	2 cut(s)	40, 55
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	250, 451
PkrI	GCNGC	2 cut(s)	227, 239
PleI	GAGTC	2 cut(s)	89, 317
PpsI	GAGTC	2 cut(s)	89, 317
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	40, 55
PspPI	GGNCC	3 cut(s)	54, 380, 440
PspPPI	RGGWCCY	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	226, 238
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	3 cut(s)	54, 380, 440
SchI	GAGTC	2 cut(s)	89, 317
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	108, 306
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	1 cut(s)	138
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	92, 303
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	250, 451
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	64, 235
TseI	GCWGC	2 cut(s)	225, 237
TspDTI	ATGAA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	64, 235
VpaK11BI	GGWCC	1 cut(s)	380
XspI	CTAG	2 cut(s)	92, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.