Rh5CG295100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012532
Physical Location & Seq
Reverse (-)
32476751 .. 32477222
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG295100.1

Sequence Viewer

Length: 423 bp
ATGGTTCAGAAGCTTGAAGCTATAAAGGGTGGTGGAGGATCCATCAGGGTAGGGGCCACCGGGACAGTCAGTTCCCTAATGACAAGAGAACTAGACTCCATCAAGCTCCTGTTTCTGTTCCATGTGGTGTTCCTACTCCAAAAAAACTACCAAGGAAGTCATCTGACGAAGAATCAGAGACACCCTGACATTCCCCAGAAACCAAAAACTCATCTGAAAACTACTAGTCAAATCCCGATGCTCGACTCTCATAATATTGGTATGGATAAAACTCCTATTAGGCAGAAAGCTAACAAGAAAGGACCTAATATCGTTGAAGTTGTGGACATCAAATGTGGGGGCTCGGGTAGAGCGTGGGCTGGCCCTGTAACGAATCGGCTCAAGAAGCTGAGCTTCTCAAAGCTCTCTGAGAGTGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

10.26

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54850
fragaria_vesca FvH4_3g22210
malus_domestica MD11G1222100.v1.1
prunus_persica Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis pycom11g19590
rosa_chinensis RchiOBHm_Chr5g0038281
rosa_laevigata RLG00000033842
rosa_multiflora Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii Rroxscaffold_1G00042770
rosa_rugosa Rorug05G0171600
rosa_samantha Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana Rw5G024240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 33, 46
AgsI TTSAA 2 cut(s) 17, 317
AhlI ACTAGT 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 7 cut(s) 13, 20, 106, 290, 388, 393, 403
AluI AGCT 7 cut(s) 13, 20, 106, 290, 388, 393, 403
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 2 cut(s) 33, 46
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 2 cut(s) 54, 361
AspS9I GGNCC 3 cut(s) 54, 302, 362
AsuC2I CCSGG 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 302
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 344
BccI CCATC 2 cut(s) 50, 107
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 2 cut(s) 92, 225
BlpI GCTNAGC 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 54, 302, 362
BmiI GGNNCC 2 cut(s) 40, 55
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 380, 399
BshFI GGCC 2 cut(s) 56, 363
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 56, 363
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 56, 363
BspCNI CTCAG 2 cut(s) 381, 400
BspLI GGNNCC 2 cut(s) 40, 55
BspPI GGATC 2 cut(s) 33, 46
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 389, 408
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 2 cut(s) 56, 363
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 54, 302, 362
CviAII CATG 1 cut(s) 122
DdeI CTNAG 2 cut(s) 389, 408
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 125
FaiI YATR 4 cut(s) 23, 123, 252, 263
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 344
FspBI CTAG 2 cut(s) 92, 225
HaeIII GGCC 2 cut(s) 56, 363
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 4 cut(s) 95, 172, 245, 373
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 5 cut(s) 9, 165, 177, 216, 409
Hpy188III TCNNGA 2 cut(s) 235, 382
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 389, 408
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 7 cut(s) 31, 73, 122, 198, 209, 345, 378
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 92, 225
MaeIII GTNAC 1 cut(s) 367
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 89, 239
MnlI CCTC 1 cut(s) 29
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 40, 55
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfeI GAWTC 2 cut(s) 172, 373
PleI GAGTC 2 cut(s) 89, 239
PpsI GAGTC 2 cut(s) 89, 239
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 40, 55
PspPI GGNCC 3 cut(s) 54, 302, 362
PspPPI RGGWCCY 1 cut(s) 302
PsuI RGATCY 1 cut(s) 38
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 3 cut(s) 54, 302, 362
SchI GAGTC 2 cut(s) 89, 239
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 344
SetI ASST 8 cut(s) 15, 22, 108, 292, 307, 390, 395, 405
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 224
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 92, 225
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 243
TfiI GAWTC 2 cut(s) 172, 373
VpaK11BI GGWCC 1 cut(s) 302
XspI CTAG 2 cut(s) 92, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.