Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

15996564 .. 16000616

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATGCCTTCAGCTCGAGATCCGTTTTATGTTGTGAAAGAGGAGATTCAAGAATCTATCGATAAGCTGCAGTCTTCTTTTCACCAATGGGAACGTATTTCATCTAATGGTGGACAACAAGTACAACTCATGAAGGAACTGCTTGCTACTTGTGAAAGAATTGAGTGGGAGGTAGATGAATTGGGCAAAGCAGTATCTGTAGCAGCTACAAATCCTAATAAATATGGGATTGATGAAGTGGAACTTGAAAAGCGAAAGAGATGGACAAGCACTGCTCATGCTCAGGTAGGTGCAGTAAAAAGAGCAGTGGAGGCTGGAAAGGAGTCTACGGGAACTAGTGCAGCTGGAATGAGGCGAGAACTAATGAGGCTGGCAAATTCTCAGGAGACAGACAGATCCCACCAATATGCTGCACACCATAACGATGATTTCATAACATCAGAATCAGATAGACAGTTGCTTCTCATAAAGCAACAGGATGAGGAGTTGGACGAACTCAGTGCCAGTGTGGAGAGAATTGGAGGTGTCGGACTTACCATACATGAAGAGCTCCTCGCACAGGACAAGATTGTAGAGGAGTTGGGTATGGAAATGGACAGTACTTCAAATCGTCTTGATTTTGTTCAGAAAAAGGTGGCAACAGTAATGAAGAAGGCTGGTGTAAAAGGCCAGATTATGATGATACTCTTTTTGGTGGTTTTGTTCATCATTCTTTTTGTTTTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

246

Amino Acids

27.63

Weight (kDa)

5.19

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	7 - 100	2.6e-25	Syntaxin 6/10/61, N-terminal
SNARE	PF05739	190 - 241	2.1e-07	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	326
AclWI	GGATC	2 cut(s)	14, 390
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	2 cut(s)	123, 601
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	3 cut(s)	50, 248, 606
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	5 cut(s)	14, 67, 206, 344, 550
AluI	AGCT	5 cut(s)	14, 67, 206, 344, 550
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	14, 390
AlwNI	CAGNNNCTG	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	4 cut(s)	67, 203, 341, 410
ApoI	RAATTY	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	74, 724
AvaI	CYCGRG	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	66, 718
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	54, 215, 353, 397
BccI	CCATC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BcoDI	GTCTC	1 cut(s)	380
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	2 cut(s)	336, 736
BfmI	CTRYAG	2 cut(s)	68, 198
BisI	GCNGC	4 cut(s)	68, 204, 342, 411
BlsI	GCNGC	4 cut(s)	69, 205, 343, 412
BmcAI	AGTACT	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	15
BpiI	GAAGAC	2 cut(s)	66, 718
Bpu10I	CCTNAGC	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	60
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	3 cut(s)	296, 395, 511
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	4 cut(s)	56, 497, 542, 590
BseXI	GCAGC	4 cut(s)	54, 215, 353, 397
BsgI	GTGCAG	3 cut(s)	312, 360, 396
BshFI	GGCC	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	669
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	19, 395
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	3 cut(s)	295, 394, 510
BspDI	ATCGAT	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	72
BspPI	GGATC	2 cut(s)	14, 390
BspQI	GCTCTTC	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	19, 395
Bst4CI	ACNGT	3 cut(s)	456, 599, 643
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	144, 372
BstDEI	CTNAG	3 cut(s)	282, 381, 497
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	2 cut(s)	22, 398
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	2 cut(s)	19, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstSFI	CTRYAG	2 cut(s)	68, 198
BstV1I	GCAGC	4 cut(s)	54, 215, 353, 397
BstV2I	GAAGAC	2 cut(s)	66, 718
BstX2I	RGATCY	2 cut(s)	19, 395
BstYI	RGATCY	2 cut(s)	19, 395
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	669
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	2 cut(s)	270, 312
BtsIMutI	CAGTG	4 cut(s)	270, 312, 505, 511
Cac8I	GCNNGC	2 cut(s)	144, 372
CaiI	CAGNNNCTG	1 cut(s)	197
CciI	TCATGA	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	122, 600
CviAII	CATG	3 cut(s)	130, 278, 542
CviJI	RGCY	9 cut(s)	14, 67, 206, 314, 344, 370, 550, 656, 669
CviKI_1	RGCY	9 cut(s)	14, 67, 206, 314, 344, 370, 550, 656, 669
CviQI	GTAC	2 cut(s)	122, 600
DdeI	CTNAG	3 cut(s)	282, 381, 497
DpnI	GATC	2 cut(s)	21, 397
DpnII	GATC	2 cut(s)	19, 395
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	550
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	550
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	3 cut(s)	133, 281, 545
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	3 cut(s)	129, 277, 541
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	4 cut(s)	68, 204, 342, 411
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	4 cut(s)	68, 204, 342, 411
FspBI	CTAG	2 cut(s)	336, 736
GluI	GCNGC	4 cut(s)	68, 204, 342, 411
HaeIII	GGCC	1 cut(s)	669
Hin1II	CATG	3 cut(s)	133, 281, 545
HinfI	GANTC	4 cut(s)	46, 53, 323, 443
HphI	GGTGA	2 cut(s)	74, 724
Hpy166II	GTNNAC	2 cut(s)	113, 327
Hpy188I	TCNGA	4 cut(s)	442, 448, 530, 627
Hpy188III	TCNNGA	5 cut(s)	17, 50, 130, 383, 614
Hpy8I	GTNNAC	2 cut(s)	113, 327
HpyAV	CCTTC	3 cut(s)	18, 127, 646
HpyCH4III	ACNGT	3 cut(s)	456, 599, 643
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	70, 293, 341, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	282, 381, 497
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	133, 281, 545
Kzo9I	GATC	2 cut(s)	19, 395
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	555
Lsp1109I	GCAGC	4 cut(s)	54, 215, 353, 397
MaeI	CTAG	2 cut(s)	336, 736
MaeII	ACGT	1 cut(s)	94
MalI	GATC	2 cut(s)	21, 397
MboI	GATC	2 cut(s)	19, 395
MboII	GAAGA	4 cut(s)	66, 557, 661, 718
MflI	RGATCY	2 cut(s)	19, 395
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	4 cut(s)	159, 179, 376, 516
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	468, 508
MnlI	CCTC	9 cut(s)	34, 163, 304, 345, 360, 475, 515, 563, 568
MslI	CAYNNNNRTG	2 cut(s)	405, 423
MspA1I	CMGCKG	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	19, 395
NlaIII	CATG	3 cut(s)	133, 281, 545
PaeR7I	CTCGAG	1 cut(s)	15
PagI	TCATGA	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	46, 53, 443
PkrI	GCNGC	4 cut(s)	69, 205, 343, 412
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	19, 395
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	123, 601
RsaNI	GTAC	2 cut(s)	122, 600
RseI	CAYNNNNRTG	2 cut(s)	405, 423
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	540
SatI	GCNGC	4 cut(s)	68, 204, 342, 411
Sau3AI	GATC	2 cut(s)	19, 395
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	552
SfcI	CTRYAG	2 cut(s)	68, 198
Sfr274I	CTCGAG	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	405, 423
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	4 cut(s)	159, 179, 376, 516
SspMI	CTAG	2 cut(s)	336, 736
SstI	GAGCTC	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	456, 599, 643
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	16, 60
TasI	AATT	4 cut(s)	159, 179, 376, 516
TatI	WGTACW	2 cut(s)	121, 599
TfiI	GAWTC	3 cut(s)	46, 53, 443
TscAI	CASTG	4 cut(s)	277, 312, 505, 511
TseI	GCWGC	4 cut(s)	67, 203, 341, 410
TspDTI	ATGAA	8 cut(s)	90, 146, 192, 249, 421, 558, 662, 694
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	4 cut(s)	277, 312, 505, 511
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	2 cut(s)	336, 736
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.