Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

35907974 .. 35910613

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G025240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCTTCGGCTCAAGATCCGTTCTATGTTGTGAAAGAGGAGATTCAAGAATCTATCGATAAGCTGCAGTCTTCTTTTCACCAATGGGAACGTATTTCATCTAACGGTGGACAACAACTACAACTCACGAAGGAGCTGCTTGCCACTTGTGGAAGCATCGAGTGGCAGGTAGATGAACTGGACAAAGCAATATCTGTAGCGGCTAGAGATCCCAGTTTTTATGGTATTGATGAAGTGGAACTTGAAAAGCGAAGGAGATGGACAAGCACTGCTCGTGCTCAGGTAGGTGCGGTAAAAAAAGCAGTGGAAGCTGGAAAGGAGTCCACCGGAACTAGCGCAGCTGGAATGCGGCGGGAACTAATGAGGCTGGCAAATTCTCAGGAGACAGACAGATCCAATCAATATGCTGCACACCATCATGATGATTTCATAACATCAGAATCAGATAGACAGTTGCTTCTCATAAAGCAACAAGATGAGGAGTTGGACGAACTCAGTGCCAGTGTGGAGAGAATTGGAGGTGTCGGACTTACCATACATGAAGAGCTCCTGGCACAGGACAAAATTGTAGAGGAGTTGGGTATGGAAATGGACAGTACATCAAACCGGCTTGATTTTGTTCAGAAAAAGGTGGCAACAGTGATGAAGAAGGCTGGTGTAAAAGGCCAGATTATGATGATACTCTTTTTGGTGGTTTTGTTCATCATTCTTTTTGTTTTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

244

Amino Acids

27.45

Weight (kDa)

5.03

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	6 - 99	7.3e-27	Syntaxin 6/10/61, N-terminal
SNARE	PF05739	189 - 240	2.1e-07	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AciI	CCGC	4 cut(s)	200, 290, 349, 352
AclWI	GGATC	3 cut(s)	11, 203, 387
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	2 cut(s)	47, 245
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	5 cut(s)	64, 136, 311, 341, 547
AluI	AGCT	5 cut(s)	64, 136, 311, 341, 547
Alw21I	GWGCWC	2 cut(s)	280, 549
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	11, 203, 387
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	4 cut(s)	64, 136, 338, 407
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	71, 721
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	63, 715
Bbv12I	GWGCWC	2 cut(s)	280, 549
BbvI	GCAGC	4 cut(s)	51, 123, 350, 394
BccI	CCATC	2 cut(s)	252, 423
BcgI	CGANNNNNNTGC	4 cut(s)	118, 152, 479, 513
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	3 cut(s)	204, 333, 733
BfmI	CTRYAG	2 cut(s)	65, 195
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	6 cut(s)	65, 137, 201, 339, 350, 408
BlsI	GCNGC	6 cut(s)	66, 138, 202, 340, 351, 409
Bme1390I	CCNGG	1 cut(s)	551
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	63, 715
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	3 cut(s)	183, 213, 501
BseBI	CCWGG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	3 cut(s)	293, 392, 508
BseNI	ACTGG	3 cut(s)	183, 213, 501
BseRI	GAGGAG	3 cut(s)	53, 494, 587
BseXI	GCAGC	4 cut(s)	51, 123, 350, 394
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	666
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	280, 549
BsiSI	CCGG	2 cut(s)	327, 607
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	280, 549
Bsp143I	GATC	3 cut(s)	16, 208, 392
BspACI	CCGC	4 cut(s)	200, 290, 349, 352
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	3 cut(s)	292, 391, 507
BspDI	ATCGAT	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	3 cut(s)	11, 203, 387
BspQI	GCTCTTC	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	183, 213, 501
BssAI	RCCGGY	1 cut(s)	606
BssMI	GATC	3 cut(s)	16, 208, 392
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	4 cut(s)	107, 453, 596, 640
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	141, 369
BstDEI	CTNAG	3 cut(s)	279, 378, 494
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	3 cut(s)	19, 211, 395
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	16, 208, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	65, 195
BstV1I	GCAGC	4 cut(s)	51, 123, 350, 394
BstV2I	GAAGAC	2 cut(s)	63, 715
BstX2I	RGATCY	3 cut(s)	16, 208, 392
BstYI	RGATCY	3 cut(s)	16, 208, 392
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	666
BsuTUI	ATCGAT	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	267, 309
BtsIMutI	CAGTG	5 cut(s)	267, 309, 502, 508, 645
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	141, 369
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	606
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	2 cut(s)	419, 539
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	3 cut(s)	279, 378, 494
DpnI	GATC	3 cut(s)	18, 210, 394
DpnII	GATC	3 cut(s)	16, 208, 392
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco53kI	GAGCTC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	2 cut(s)	422, 542
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	2 cut(s)	418, 538
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	65, 137, 201, 339, 350, 408
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	6 cut(s)	65, 137, 201, 339, 350, 408
FspBI	CTAG	3 cut(s)	204, 333, 733
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	6 cut(s)	65, 137, 201, 339, 350, 408
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	2 cut(s)	327, 607
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	422, 542
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	4 cut(s)	43, 50, 320, 440
HpaII	CCGG	2 cut(s)	327, 607
HphI	GGTGA	2 cut(s)	71, 721
Hpy166II	GTNNAC	2 cut(s)	110, 324
Hpy188I	TCNGA	4 cut(s)	439, 445, 527, 624
Hpy188III	TCNNGA	5 cut(s)	14, 47, 127, 380, 419
Hpy8I	GTNNAC	2 cut(s)	110, 324
HpyAV	CCTTC	4 cut(s)	15, 124, 246, 643
HpyCH4III	ACNGT	4 cut(s)	107, 453, 596, 640
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	67, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	279, 378, 494
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	422, 542
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	16, 208, 392
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	133, 552
Lsp1109I	GCAGC	4 cut(s)	51, 123, 350, 394
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	3 cut(s)	204, 333, 733
MaeII	ACGT	1 cut(s)	91
MalI	GATC	3 cut(s)	18, 210, 394
MboI	GATC	3 cut(s)	16, 208, 392
MboII	GAAGA	4 cut(s)	63, 554, 658, 715
MflI	RGATCY	3 cut(s)	16, 208, 392
MhlI	GDGCHC	2 cut(s)	280, 549
MluCI	AATT	3 cut(s)	373, 513, 564
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	465, 505
MnlI	CCTC	5 cut(s)	31, 357, 472, 512, 565
MslI	CAYNNNNRTG	2 cut(s)	417, 420
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	327, 607
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	16, 208, 392
NlaIII	CATG	2 cut(s)	422, 542
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	537
PctI	GAATGC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	43, 50, 440
PkrI	GCNGC	6 cut(s)	66, 138, 202, 340, 351, 409
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	3 cut(s)	16, 208, 392
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	2 cut(s)	417, 420
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	537
SatI	GCNGC	6 cut(s)	65, 137, 201, 339, 350, 408
Sau3AI	GATC	3 cut(s)	16, 208, 392
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	2 cut(s)	280, 549
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	2 cut(s)	65, 195
SmiMI	CAYNNNNRTG	2 cut(s)	417, 420
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	373, 513, 564
SsiI	CCGC	4 cut(s)	200, 290, 349, 352
SspMI	CTAG	3 cut(s)	204, 333, 733
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	4 cut(s)	107, 453, 596, 640
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	57, 159
TasI	AATT	3 cut(s)	373, 513, 564
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	2 cut(s)	203, 352
TfiI	GAWTC	3 cut(s)	43, 50, 440
TscAI	CASTG	5 cut(s)	274, 309, 502, 508, 645
TseI	GCWGC	4 cut(s)	64, 136, 338, 407
TspDTI	ATGAA	7 cut(s)	87, 189, 246, 418, 555, 659, 691
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	5 cut(s)	274, 309, 502, 508, 645
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	3 cut(s)	204, 333, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.