Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

27377401 .. 27383034

Gene Structure 5634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1200000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTATTCCATGTCCAAATCCGAAGCCCATATAGTTTCTCTCTCAACTCTCTCTCAACTTCGTCTTCTCAAACTTCTTCGTCTGCTTCCGTGCATTACTCCAGACGAGGATCTCACAGATCAGGTCCCTCTGCCTCTCCGTTCAGTCCGTACAGATTAGTTTCGTTCACAATGCCTTCAGCCCAAGATCCGTTCTATGTTGTGAAAGAGGAGATTCAAGAATCTATTGAAAAGTTACAGTCTTCTTTTCACCAATGGGAGCGTCTTTCATCTGATAATGGAGAGCAAGTACGTCTCACAAAGGAGCTGCTTGCTTCTTGTGGAAGCATTGAATGGCAGGTAGATGAGTTGGACAAAGCGATTTCCGTAGCAGCTAGAGATCCTACATGGTATGGCATTGATGAAGTAGAACTTGAAAAACGAAGGAGATGGACAAGCACTGCTCGTGCTCAGGTGGGCTCTTTAAAGAAAGCAGTCGAAGCTGGAAAGGATTCTTCTGGAACTAGTGTAAATGGGATGCGTCGAGAACTAATGAGGGTGGCGAATTCTCAGGAGACAGAAAGATCCAACCCGTATGGTGCGCACCATAACGACGACTTCATAACCTCAGAATCAGATAGACAATTGCTTCTCATAAAGCAACAGGATGAGGAGTTGGACGAACTTAGTGCAAGTGTGGAGAGAATTGGCGGTGTTGGACTTACTATTCATGAAGAGCTCCTTGCACAGGAGAAGATTATAGAAGAATTGGGCACAGAAATGGACGGTACATCAAATCGTCTTGATTTTGTTCAGAAGAAGGTGGCTGCAGTGATGAAGAAGGCTGGTGTGAAAGGCCAGTTCATGATGATACTATTTTTGCTGGTTCTGTTCATCATCCTTTTTGTATTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

302

Amino Acids

33.8

Weight (kDa)

5.61

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	63 - 155	1.6e-27	Syntaxin 6/10/61, N-terminal
SNARE	PF05739	246 - 297	5.1e-07	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	328
AciI	CCGC	1 cut(s)	690
AclWI	GGATC	4 cut(s)	118, 182, 374, 558
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	152, 291, 769
AfiI	CCNNNNNNNGG	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	218, 230, 332, 416
AhlI	ACTAGT	1 cut(s)	503
AluBI	AGCT	4 cut(s)	307, 374, 482, 718
AluI	AGCT	4 cut(s)	307, 374, 482, 718
Alw21I	GWGCWC	2 cut(s)	451, 720
Alw26I	GTCTC	2 cut(s)	299, 548
AlwI	GGATC	4 cut(s)	118, 182, 374, 558
AoxI	GGCC	1 cut(s)	835
ApeKI	GCWGC	3 cut(s)	307, 371, 806
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	242, 892
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	755
BanII	GRGCYC	2 cut(s)	461, 720
BauI	CACGAG	1 cut(s)	444
BbsI	GAAGAC	3 cut(s)	57, 234, 886
Bbv12I	GWGCWC	2 cut(s)	451, 720
BbvI	GCAGC	3 cut(s)	294, 383, 793
BccI	CCATC	1 cut(s)	423
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BcoDI	GTCTC	2 cut(s)	299, 548
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	3 cut(s)	375, 504, 904
BfmI	CTRYAG	1 cut(s)	807
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	308, 372, 807
BlsI	GCNGC	3 cut(s)	309, 373, 808
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	507
BpiI	GAAGAC	3 cut(s)	57, 234, 886
BpmI	CTGGAG	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse1I	ACTGG	1 cut(s)	838
BseGI	GGATG	3 cut(s)	522, 652, 876
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMII	CTCAG	3 cut(s)	464, 563, 621
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	2 cut(s)	224, 665
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	3 cut(s)	294, 383, 793
BshFI	GGCC	1 cut(s)	837
BsiHKAI	GWGCWC	2 cut(s)	451, 720
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	2 cut(s)	299, 548
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	837
Bsp1286I	GDGCHC	4 cut(s)	451, 461, 720, 755
Bsp143I	GATC	5 cut(s)	110, 119, 187, 379, 563
BspACI	CCGC	1 cut(s)	690
BspANI	GGCC	1 cut(s)	837
BspCNI	CTCAG	3 cut(s)	463, 562, 620
BspHI	TCATGA	2 cut(s)	709, 843
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	4 cut(s)	118, 182, 374, 558
BspQI	GCTCTTC	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	838
BssMI	GATC	5 cut(s)	110, 119, 187, 379, 563
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	240, 767
Bst6I	CTCTTC	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	450, 549, 607, 665
BstENI	CCTNNNNNAGG	1 cut(s)	725
BstF5I	GGATG	3 cut(s)	522, 652, 876
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	5 cut(s)	113, 122, 190, 382, 566
BstMAI	GTCTC	2 cut(s)	299, 548
BstMBI	GATC	5 cut(s)	110, 119, 187, 379, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	755
BstV1I	GCAGC	3 cut(s)	294, 383, 793
BstV2I	GAAGAC	3 cut(s)	57, 234, 886
BstX2I	RGATCY	4 cut(s)	110, 187, 379, 563
BstYI	RGATCY	4 cut(s)	110, 187, 379, 563
BsuRI	GGCC	1 cut(s)	837
BtsCI	GGATG	3 cut(s)	522, 652, 876
BtsI	GCAGTG	2 cut(s)	438, 816
BtsIMutI	CAGTG	2 cut(s)	438, 816
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	312
CciI	TCATGA	2 cut(s)	709, 843
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	2 cut(s)	251, 509
Csp6I	GTAC	3 cut(s)	151, 290, 768
CviAII	CATG	4 cut(s)	11, 387, 710, 844
CviQI	GTAC	3 cut(s)	151, 290, 768
DdeI	CTNAG	4 cut(s)	450, 549, 607, 665
DpnI	GATC	5 cut(s)	112, 121, 189, 381, 565
DpnII	GATC	5 cut(s)	110, 119, 187, 379, 563
DraI	TTTAAA	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	718
Eco24I	GRGCYC	2 cut(s)	461, 720
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	544
EcoT38I	GRGCYC	2 cut(s)	461, 720
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	4 cut(s)	14, 390, 713, 847
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 705, 737
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	4 cut(s)	10, 386, 709, 843
Fnu4HI	GCNGC	3 cut(s)	308, 372, 807
FokI	GGATG	3 cut(s)	529, 659, 863
FriOI	GRGCYC	2 cut(s)	461, 720
Fsp4HI	GCNGC	3 cut(s)	308, 372, 807
FspAI	RTGCGCAY	1 cut(s)	582
FspBI	CTAG	3 cut(s)	375, 504, 904
FspI	TGCGCA	1 cut(s)	582
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	3 cut(s)	308, 372, 807
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	837
HgaI	GACGC	2 cut(s)	251, 509
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	4 cut(s)	14, 390, 713, 847
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	4 cut(s)	214, 221, 491, 611
HphI	GGTGA	2 cut(s)	242, 892
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	5 cut(s)	23, 274, 610, 616, 795
Hpy188III	TCNNGA	8 cut(s)	102, 218, 498, 524, 551, 710, 782, 844
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	2 cut(s)	525, 596
HpyAV	CCTTC	4 cut(s)	186, 417, 793, 814
HpyCH4III	ACNGT	2 cut(s)	240, 767
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	94, 671, 725, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	4 cut(s)	450, 549, 607, 665
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	14, 390, 713, 847
HspAI	GCGC	1 cut(s)	581
Kzo9I	GATC	5 cut(s)	110, 119, 187, 379, 563
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	259, 304, 723
Lsp1109I	GCAGC	3 cut(s)	294, 383, 793
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	3 cut(s)	375, 504, 904
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	5 cut(s)	112, 121, 189, 381, 565
MboI	GATC	5 cut(s)	110, 119, 187, 379, 563
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	4 cut(s)	110, 187, 379, 563
MhlI	GDGCHC	4 cut(s)	451, 461, 720, 755
MluCI	AATT	4 cut(s)	544, 623, 684, 746
MmeI	TCCRAC	4 cut(s)	330, 591, 636, 676
MnlI	CCTC	7 cut(s)	101, 139, 145, 202, 528, 616, 643
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	758
MunI	CAATTG	1 cut(s)	623
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	5 cut(s)	110, 119, 187, 379, 563
NlaIII	CATG	4 cut(s)	14, 390, 713, 847
NlaIV	GGNNCC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	582
PagI	TCATGA	2 cut(s)	709, 843
PciSI	GCTCTTC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	4 cut(s)	214, 221, 491, 611
PkrI	GCNGC	3 cut(s)	309, 373, 808
PpuMI	RGGWCCY	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	811
PsuI	RGATCY	4 cut(s)	110, 187, 379, 563
RsaI	GTAC	3 cut(s)	152, 291, 769
RsaNI	GTAC	3 cut(s)	151, 290, 768
RseI	CAYNNNNRTG	1 cut(s)	758
SacI	GAGCTC	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	3 cut(s)	308, 372, 807
Sau3AI	GATC	5 cut(s)	110, 119, 187, 379, 563
Sau96I	GGNCC	1 cut(s)	125
SduI	GDGCHC	4 cut(s)	451, 461, 720, 755
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	758
SpeI	ACTAGT	1 cut(s)	503
Sse9I	AATT	4 cut(s)	544, 623, 684, 746
SsiI	CCGC	1 cut(s)	690
SspMI	CTAG	3 cut(s)	375, 504, 904
SstI	GAGCTC	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	240, 767
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	477, 523
TasI	AATT	4 cut(s)	544, 623, 684, 746
TfiI	GAWTC	4 cut(s)	214, 221, 491, 611
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	2 cut(s)	445, 816
TseI	GCWGC	3 cut(s)	307, 371, 806
TspDTI	ATGAA	8 cut(s)	258, 417, 589, 698, 726, 830, 832, 862
TspGWI	ACGGA	5 cut(s)	79, 129, 138, 180, 355
TspRI	CASTG	2 cut(s)	445, 816
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	725
XapI	RAATTY	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	3 cut(s)	375, 504, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.