Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

16495967 .. 16499505

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCTTCAGCTCAAGATCCATTCTATGTTGTGAAAGAGGAGATTCAAGAATCTATTGATAAGTTACAGTCTTCTTTTCACCAATGGGAGCGTATTTCATCTGATAATGGAGAGCAAGTACGTCTCACAAAGGAGCTGCTTGCTTCTTGTGGAAGCATTGAATGGCAGGTAGATGAGTTGGACAAAGCGATTTCCGTAGCAGCTAGAGATCCTACATGGTATGGCATTGATGAAGTAGAACTAGAAAAACGAAGGAGATGGACAAGCACTGCTCGTGCCCAGGTGGGCTCTTTAAAGAAAGCAGTCGAAGCTGGAAAGGAGTCTTCTGGAACTAGTGTGAATGGGATGCGTCGAGAACTAATGAGGGTGGCAAATTCTCAGGAGACAGAAAGGTCCAGCCCGTATGATGCGCACCATAACGACGACTTCATAACCTCAGAATCAGATAGACAATTGCTTCTCATAAAGCAACAAGATGAGGAGTTGGACGAACTTAGTGCAAGTGTGGAGAGAATTGGCGGTGTTGGACTTACTATTCATGAAGAGCTTCTCGCACAGGAGAAGATTATAGAAGAATTGGGCACGGAAATGGATGGTACATCAAATCGTCTTGATTTTGTTCAGAAGAAGGTGGCTGCAGTGATGAAGAAGGCTGGTGTGAAAGGCCAGTTGATGATGATACTATTTTTGCTGGTTCTGTTCATCATCCTTTTTATATTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

245

Amino Acids

27.57

Weight (kDa)

4.88

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	6 - 98	4.6e-28	Syntaxin 6/10/61, N-terminal
SNARE	PF05739	189 - 240	1.8e-07	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
Acc16I	TGCGCA	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	157
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	2 cut(s)	11, 203
AcsI	RAATTY	1 cut(s)	373
AfaI	GTAC	2 cut(s)	120, 598
AgsI	TTSAA	2 cut(s)	47, 161
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	5 cut(s)	11, 136, 203, 311, 547
AluI	AGCT	5 cut(s)	11, 136, 203, 311, 547
Alw26I	GTCTC	2 cut(s)	128, 377
AlwI	GGATC	2 cut(s)	11, 203
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	3 cut(s)	136, 200, 635
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	71, 721
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	2 cut(s)	280, 584
BanII	GRGCYC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	3 cut(s)	63, 315, 715
BbvI	GCAGC	3 cut(s)	123, 212, 622
BccI	CCATC	2 cut(s)	252, 587
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	128, 377
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	4 cut(s)	204, 242, 333, 733
BfmI	CTRYAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	3 cut(s)	137, 201, 636
BlsI	GCNGC	3 cut(s)	138, 202, 637
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	336, 397
BpiI	GAAGAC	3 cut(s)	63, 315, 715
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bse1I	ACTGG	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	351, 598, 705
BseMII	CTCAG	2 cut(s)	392, 450
BseNI	ACTGG	1 cut(s)	667
BseRI	GAGGAG	2 cut(s)	53, 494
BseSI	GKGCMC	2 cut(s)	280, 584
BseXI	GCAGC	3 cut(s)	123, 212, 622
BshFI	GGCC	1 cut(s)	666
BsmAI	GTCTC	2 cut(s)	128, 377
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	666
Bsp1286I	GDGCHC	3 cut(s)	280, 290, 584
Bsp143I	GATC	2 cut(s)	16, 208
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	2 cut(s)	391, 449
BspHI	TCATGA	1 cut(s)	538
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	11, 203
BspQI	GCTCTTC	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	16, 208
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	378, 436, 494
BstF5I	GGATG	3 cut(s)	351, 598, 705
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	19, 211
BstMAI	GTCTC	2 cut(s)	128, 377
BstMBI	GATC	2 cut(s)	16, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	2 cut(s)	280, 584
BstV1I	GCAGC	3 cut(s)	123, 212, 622
BstV2I	GAAGAC	3 cut(s)	63, 315, 715
BstX2I	RGATCY	2 cut(s)	16, 208
BstYI	RGATCY	2 cut(s)	16, 208
BsuRI	GGCC	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	351, 598, 705
BtsI	GCAGTG	2 cut(s)	267, 645
BtsIMutI	CAGTG	2 cut(s)	267, 645
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	119, 597
CviAII	CATG	2 cut(s)	216, 539
CviQI	GTAC	2 cut(s)	119, 597
DdeI	CTNAG	3 cut(s)	378, 436, 494
DpnI	GATC	2 cut(s)	18, 210
DpnII	GATC	2 cut(s)	16, 208
DraI	TTTAAA	1 cut(s)	294
DrdI	GACNNNNNNGTC	1 cut(s)	391
DseDI	GACNNNNNNGTC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	2 cut(s)	219, 542
FatI	CATG	2 cut(s)	215, 538
Fnu4HI	GCNGC	3 cut(s)	137, 201, 636
FokI	GGATG	3 cut(s)	358, 605, 692
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	137, 201, 636
FspAI	RTGCGCAY	1 cut(s)	411
FspBI	CTAG	4 cut(s)	204, 242, 333, 733
FspI	TGCGCA	1 cut(s)	411
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	3 cut(s)	137, 201, 636
HaeIII	GGCC	1 cut(s)	666
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	219, 542
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	4 cut(s)	43, 50, 320, 440
HphI	GGTGA	2 cut(s)	71, 721
Hpy188I	TCNGA	4 cut(s)	103, 439, 445, 624
Hpy188III	TCNNGA	7 cut(s)	14, 47, 327, 353, 380, 539, 611
Hpy99I	CGWCG	2 cut(s)	354, 425
HpyAV	CCTTC	4 cut(s)	15, 246, 622, 643
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	500, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	3 cut(s)	378, 436, 494
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	2 cut(s)	219, 542
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	2 cut(s)	16, 208
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	88, 133
Lsp1109I	GCAGC	3 cut(s)	123, 212, 622
LweI	GCATC	2 cut(s)	336, 397
MaeI	CTAG	4 cut(s)	204, 242, 333, 733
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	2 cut(s)	18, 210
MboI	GATC	2 cut(s)	16, 208
MboII	GAAGA	8 cut(s)	63, 315, 554, 574, 584, 637, 658, 715
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	2 cut(s)	16, 208
MhlI	GDGCHC	3 cut(s)	280, 290, 584
MluCI	AATT	4 cut(s)	373, 452, 513, 575
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	3 cut(s)	159, 465, 505
MnlI	CCTC	4 cut(s)	31, 357, 445, 472
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	16, 208
NlaIII	CATG	2 cut(s)	219, 542
NsbI	TGCGCA	1 cut(s)	411
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	3 cut(s)	43, 50, 440
PkrI	GCNGC	3 cut(s)	138, 202, 637
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	16, 208
RsaI	GTAC	2 cut(s)	120, 598
RsaNI	GTAC	2 cut(s)	119, 597
RseI	CAYNNNNRTG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	3 cut(s)	137, 201, 636
Sau3AI	GATC	2 cut(s)	16, 208
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	280, 290, 584
SfaNI	GCATC	2 cut(s)	336, 397
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	4 cut(s)	373, 452, 513, 575
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	4 cut(s)	204, 242, 333, 733
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	306, 352
TasI	AATT	4 cut(s)	373, 452, 513, 575
TfiI	GAWTC	3 cut(s)	43, 50, 440
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	2 cut(s)	274, 645
TseI	GCWGC	3 cut(s)	136, 200, 635
TspDTI	ATGAA	7 cut(s)	87, 246, 418, 527, 555, 659, 691
TspGWI	ACGGA	2 cut(s)	184, 599
TspRI	CASTG	2 cut(s)	274, 645
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	4 cut(s)	204, 242, 333, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.