Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

13401146 .. 13406098

Gene Structure 4953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G214600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCCTCAGCTCAAGATCCATTCTATGTTGTCAAAGAGGAGATTCAAGAATCTATTGATAAGTTGCAATCTTCTTTTCATCAATGGGAACGCATTTCATCTGATACTGGAGAGCAATTACACCTCACAAAAGAACTGATTGCTACTTGTGGAAGCATTGACTGGCAGGTGGATGAGTTGGACAAAGCAATTTCCGTAGCAGCTAGAGATCCTACTTGGTATGGCATTGATGAAGTGGAACTTGAAAAAAGAAGGAGATGGACGAGCACTGCTCGTGCTCAGGTGGGTGCTGTAAAAAAAGCAGTGGAAGCTGGAAAGGATTCTACTGGCACTAGTGTGAATGGGATGCGCCGAGAACTAATGAGGCTGGCTAATTCTCAGGAGACAGATAGATCTAACCAGTATGCTGCACAACATAACGATGATTTCATAACATCTGAATCAGATAGACAGTTGCTTCTCATAAAGCAACAGGATGAGGAGTTGGATGAACTTAGTGCAAGTGTGGAGAGAATTGGGGGTGTTGGGCTTACCATTCATGAAGAGCTCCTTGCACAGGAGAAGATTGTAGATGAATTGGGTATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTGGCTACAGTTATGAAGAAGGCTGGTGTAAAAGGCCAGTGTATGATGATTGTATTTTTGCTGGTCCTGTTCATCATCCTTTTTGTTTTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

245

Amino Acids

27.56

Weight (kDa)

4.84

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	11, 203
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	2 cut(s)	47, 245
AhlI	ACTAGT	1 cut(s)	332
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	11, 203, 311, 547
AluI	AGCT	4 cut(s)	11, 203, 311, 547
Alw21I	GWGCWC	3 cut(s)	269, 280, 549
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	2 cut(s)	11, 203
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	2 cut(s)	200, 407
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	694
BanII	GRGCYC	1 cut(s)	549
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	3 cut(s)	269, 280, 549
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	212, 394
BccI	CCATC	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	377
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	3 cut(s)	204, 333, 733
BfmI	CTRYAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	2 cut(s)	201, 408
BlsI	GCNGC	2 cut(s)	202, 409
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	1 cut(s)	715
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	2 cut(s)	7, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	5 cut(s)	112, 167, 331, 400, 667
BseGI	GGATG	5 cut(s)	178, 351, 481, 493, 705
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	3 cut(s)	21, 293, 392
BseNI	ACTGG	5 cut(s)	112, 167, 331, 400, 667
BseRI	GAGGAG	2 cut(s)	53, 494
BseXI	GCAGC	2 cut(s)	212, 394
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	666
BsiHKAI	GWGCWC	3 cut(s)	269, 280, 549
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	666
Bsp1286I	GDGCHC	3 cut(s)	269, 280, 549
Bsp143I	GATC	3 cut(s)	16, 208, 392
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	3 cut(s)	20, 292, 391
BspHI	TCATGA	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	11, 203
BspQI	GCTCTTC	1 cut(s)	537
BsrI	ACTGG	5 cut(s)	112, 167, 331, 400, 667
BssMI	GATC	3 cut(s)	16, 208, 392
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	453, 596, 640
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	7, 279, 378, 494
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	5 cut(s)	178, 351, 481, 493, 705
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	3 cut(s)	19, 211, 395
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	16, 208, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	212, 394
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	3 cut(s)	16, 208, 392
BstYI	RGATCY	3 cut(s)	16, 208, 392
BsuRI	GGCC	1 cut(s)	666
BtsCI	GGATG	5 cut(s)	178, 351, 481, 493, 705
BtsI	GCAGTG	2 cut(s)	267, 309
BtsIMutI	CAGTG	3 cut(s)	267, 309, 674
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	4 cut(s)	7, 279, 378, 494
DpnI	GATC	3 cut(s)	18, 210, 394
DpnII	GATC	3 cut(s)	16, 208, 392
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	1 cut(s)	542
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 534, 566
FatI	CATG	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	201, 408
FokI	GGATG	5 cut(s)	185, 358, 488, 500, 692
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	2 cut(s)	201, 408
FspBI	CTAG	3 cut(s)	204, 333, 733
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	201, 408
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	666
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	542
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	43, 50, 320, 440
HphI	GGTGA	1 cut(s)	721
Hpy188I	TCNGA	4 cut(s)	103, 439, 445, 624
Hpy188III	TCNNGA	5 cut(s)	14, 47, 380, 539, 611
HpyAV	CCTTC	2 cut(s)	246, 643
HpyCH4III	ACNGT	3 cut(s)	453, 596, 640
HpyCH4V	TGCA	4 cut(s)	67, 410, 500, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	7, 279, 378, 494
Hsp92II	CATG	1 cut(s)	542
HspAI	GCGC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	16, 208, 392
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	2 cut(s)	212, 394
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	3 cut(s)	204, 333, 733
MalI	GATC	3 cut(s)	18, 210, 394
MboI	GATC	3 cut(s)	16, 208, 392
MboII	GAAGA	5 cut(s)	63, 554, 574, 658, 715
MflI	RGATCY	3 cut(s)	16, 208, 392
MhlI	GDGCHC	3 cut(s)	269, 280, 549
MluCI	AATT	5 cut(s)	116, 189, 373, 513, 575
MmeI	TCCRAC	2 cut(s)	159, 465
MnlI	CCTC	5 cut(s)	16, 31, 134, 357, 472
MroXI	GAANNNNTTC	1 cut(s)	319
MslI	CAYNNNNRTG	2 cut(s)	335, 420
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	16, 208, 392
NlaIII	CATG	1 cut(s)	542
NmeAIII	GCCGAG	1 cut(s)	377
OliI	CACNNNNGTG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	4 cut(s)	43, 50, 320, 440
PkrI	GCNGC	2 cut(s)	202, 409
Psp124BI	GAGCTC	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	694
PsuI	RGATCY	3 cut(s)	16, 208, 392
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	2 cut(s)	335, 420
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	537
SatI	GCNGC	2 cut(s)	201, 408
Sau3AI	GATC	3 cut(s)	16, 208, 392
Sau96I	GGNCC	1 cut(s)	694
SduI	GDGCHC	3 cut(s)	269, 280, 549
SetI	ASST	8 cut(s)	13, 126, 171, 205, 285, 313, 549, 734
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	2 cut(s)	335, 420
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	5 cut(s)	116, 189, 373, 513, 575
SspMI	CTAG	3 cut(s)	204, 333, 733
SstI	GAGCTC	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	453, 596, 640
TasI	AATT	5 cut(s)	116, 189, 373, 513, 575
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	4 cut(s)	43, 50, 320, 440
TscAI	CASTG	3 cut(s)	274, 309, 674
TseI	GCWGC	2 cut(s)	200, 407
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	3 cut(s)	274, 309, 674
VpaK11BI	GGWCC	1 cut(s)	694
XagI	CCTNNNNNAGG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	3 cut(s)	204, 333, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.