Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

31649149 .. 31654425

Gene Structure 5277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1217000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCCATCAGCACAAGATCCGTTCTATGTTGTGAAAGAGGAGATTCAAGAATCTATTGATAAGTTGCAGTCTTCTTTTCACCAATGGGAGCGTATTTCATCTGATAATGGAGAGCAAGCACATCTCACAAAGGAGCTGCTTGCTTCTTGTGGTAGCATTGAATGGCAGGTAGATGAGTTGAACAAAGCAATTTCTGTAGCAGCTAGAGATCCGACATGGTATGGCATTGATGAAGTAGAACTTGAAAAACGAAGAAGATGGACAAGCACTGCTTGTGCCCAGGTGGGTTCTGTAAAGAAAGCAGTGGAAGCTGGAAAGGAGTCTTCTGGAACTAGCGTGAATGGGATGCGTCGAGAACTAATGAGGCTGACGAATTCTCAGGAGACCAATAGATCCAACCAGTATGCTGCACAACATAACGACGACTTCATAACTTCAGAATCAGATAGACAATTGCTTCTCATAAAGCAACAGGATGAGGAGTTGGACCAACTTAGTGCAAGTGTGGAGAGAATTGGAGGTGTTGGACTTACTATTCATGAAGAGCTCCTCGCACAGGAGAAGATTATAGATGAATTGGGCACGGAAATGGACGGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTGGCTACAGTGATGAAGAAGGCAGGTGTAAAGGGCCAGTTAATGATGATTCTATTTTTACTCGTCCTGTTCATCATCCTTTTTGTATTGGTCTTCCTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

245

Amino Acids

27.49

Weight (kDa)

4.95

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STX6_10_61_N	PF09177	6 - 99	6.6e-27	Syntaxin 6/10/61, N-terminal
SNARE	PF05739	189 - 240	6.8e-09	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	644
Acc36I	ACCTGC	2 cut(s)	157, 644
AclWI	GGATC	3 cut(s)	11, 203, 387
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	47, 161, 181, 245
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	4 cut(s)	136, 203, 311, 547
AluI	AGCT	4 cut(s)	136, 203, 311, 547
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	11, 203, 387
AoxI	GGCC	1 cut(s)	664
ApeKI	GCWGC	3 cut(s)	136, 200, 407
ApoI	RAATTY	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	487, 664
AsuHPI	GGTGA	2 cut(s)	71, 721
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	2 cut(s)	280, 584
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	3 cut(s)	63, 315, 715
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	123, 212, 394
BccI	CCATC	2 cut(s)	13, 252
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	3 cut(s)	204, 333, 733
BfmI	CTRYAG	2 cut(s)	195, 636
BfuAI	ACCTGC	2 cut(s)	157, 644
BisI	GCNGC	3 cut(s)	137, 201, 408
BlsI	GCNGC	3 cut(s)	138, 202, 409
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	487, 664
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	3 cut(s)	63, 315, 715
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	400, 667
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	351, 481, 705
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	400, 667
BseRI	GAGGAG	3 cut(s)	53, 494, 539
BseSI	GKGCMC	2 cut(s)	280, 584
BseXI	GCAGC	3 cut(s)	123, 212, 394
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	666
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	280, 549, 584
Bsp143I	GATC	3 cut(s)	16, 208, 392
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	538
BspMI	ACCTGC	2 cut(s)	157, 644
BspPI	GGATC	3 cut(s)	11, 203, 387
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	400, 667
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	3 cut(s)	16, 208, 392
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	596, 640
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	117, 141
BstDEI	CTNAG	2 cut(s)	378, 494
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	3 cut(s)	351, 481, 705
BstKTI	GATC	3 cut(s)	19, 211, 395
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	3 cut(s)	16, 208, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	2 cut(s)	195, 636
BstSLI	GKGCMC	2 cut(s)	280, 584
BstV1I	GCAGC	3 cut(s)	123, 212, 394
BstV2I	GAAGAC	3 cut(s)	63, 315, 715
BstX2I	RGATCY	3 cut(s)	16, 208, 392
BstYI	RGATCY	3 cut(s)	16, 208, 392
BsuRI	GGCC	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	351, 481, 705
BtsI	GCAGTG	2 cut(s)	267, 309
BtsIMutI	CAGTG	3 cut(s)	267, 309, 645
BveI	ACCTGC	2 cut(s)	157, 644
Cac8I	GCNNGC	2 cut(s)	117, 141
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	487, 664
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	2 cut(s)	216, 539
CviJI	RGCY	7 cut(s)	136, 203, 311, 367, 547, 635, 666
CviKI_1	RGCY	7 cut(s)	136, 203, 311, 367, 547, 635, 666
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	2 cut(s)	378, 494
DpnI	GATC	3 cut(s)	18, 210, 394
DpnII	GATC	3 cut(s)	16, 208, 392
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	2 cut(s)	219, 542
FaiI	YATR	9 cut(s)	27, 217, 222, 405, 417, 431, 464, 540, 569
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 256, 288
FatI	CATG	2 cut(s)	215, 538
Fnu4HI	GCNGC	3 cut(s)	137, 201, 408
FokI	GGATG	3 cut(s)	358, 488, 692
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	137, 201, 408
FspBI	CTAG	3 cut(s)	204, 333, 733
GluI	GCNGC	3 cut(s)	137, 201, 408
HaeIII	GGCC	1 cut(s)	666
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	219, 542
HinfI	GANTC	5 cut(s)	43, 50, 320, 440, 679
HphI	GGTGA	2 cut(s)	71, 721
Hpy188I	TCNGA	5 cut(s)	103, 213, 439, 445, 624
Hpy188III	TCNNGA	6 cut(s)	47, 327, 353, 380, 539, 611
Hpy99I	CGWCG	2 cut(s)	354, 425
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	2 cut(s)	596, 640
HpyCH4V	TGCA	3 cut(s)	67, 410, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	378, 494
Hsp92II	CATG	2 cut(s)	219, 542
Kzo9I	GATC	3 cut(s)	16, 208, 392
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	3 cut(s)	88, 133, 552
Lsp1109I	GCAGC	3 cut(s)	123, 212, 394
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	3 cut(s)	204, 333, 733
MalI	GATC	3 cut(s)	18, 210, 394
MboI	GATC	3 cut(s)	16, 208, 392
MboII	GAAGA	8 cut(s)	63, 264, 267, 315, 554, 574, 658, 715
MfeI	CAATTG	1 cut(s)	452
MflI	RGATCY	3 cut(s)	16, 208, 392
MhlI	GDGCHC	3 cut(s)	280, 549, 584
MluCI	AATT	5 cut(s)	189, 373, 452, 513, 575
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	4 cut(s)	236, 420, 465, 505
MnlI	CCTC	5 cut(s)	31, 357, 472, 512, 560
MseI	TTAA	1 cut(s)	671
MslI	CAYNNNNRTG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	16, 208, 392
NlaIII	CATG	2 cut(s)	219, 542
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	537
PfeI	GAWTC	4 cut(s)	43, 50, 440, 679
PkrI	GCNGC	3 cut(s)	138, 202, 409
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	487, 664
PsuI	RGATCY	3 cut(s)	16, 208, 392
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	549
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	3 cut(s)	137, 201, 408
Sau3AI	GATC	3 cut(s)	16, 208, 392
Sau96I	GGNCC	2 cut(s)	487, 664
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	3 cut(s)	280, 549, 584
SetI	ASST	9 cut(s)	138, 171, 205, 285, 313, 523, 549, 658, 734
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	195, 636
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	587
Sse9I	AATT	5 cut(s)	189, 373, 452, 513, 575
SspMI	CTAG	3 cut(s)	204, 333, 733
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	596, 640
TaqI	TCGA	1 cut(s)	352
TasI	AATT	5 cut(s)	189, 373, 452, 513, 575
TfiI	GAWTC	4 cut(s)	43, 50, 440, 679
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	3 cut(s)	274, 309, 645
TseI	GCWGC	3 cut(s)	136, 200, 407
TspDTI	ATGAA	8 cut(s)	87, 246, 418, 527, 555, 588, 659, 691
TspGWI	ACGGA	2 cut(s)	9, 599
TspRI	CASTG	3 cut(s)	274, 309, 645
VpaK11BI	GGWCC	1 cut(s)	487
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	3 cut(s)	204, 333, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.