Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008487

Physical Location & Seq

Genomic Coordinates Reverse (-)

17718574 .. 17720355

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGCGACGAGACCGCAAACCAAGCAATCATGGAGCCGAAAATCGCTCACCCACTTCACCAAATCGCCTCCACACCAAGCCACAAGCTCCTCCTCAAGCAATGGCTCAAAGAAGAGGAGCTAATCCTCAACCGTCTCTCCCTCAAGGAAACCCAAATCGACTCCGTCCGCAAAGAAATCACAACCCTCTTCATCTTCTTCTTCCTCTTCCACTCCATTTCCCTCATCCTCCTCTTCAACTCCTCCTCCACTGATCGACACGCGCTTGCTTGCCGCCGATCTTGGATCCCCTCTCTCTGTTCTCTCTGTTTCTCTCTGGGGATCATTTGGGCGATACGGTACAAGACCGACACGGAGGGGCACCTGGAGAAGCTGATGGAGCGAGAGAAGGAGGACCGGAAGCTTCTCGGGAAGTGTATCGAGGAGTTGAAGAAGAAGGGGCTGGAGTTTGATCTGTTGAAGGAGGTGGATGCGCTTAGGAGGGCCAAGAGTATGAGGGTTGAGGCCAAAGTGGTGAAGAAATGGTCTGCTAGGGACTTTGTGACTCTGTTTTTCTTTGCTGTTTCTTGCTTTGTGCTTGCTATTACAAGGAACTTTCTGATAGAGCTCCCATCCGATACATCATTTTGCTACTTGACGGGAGGTTGCCAGCAGGCAGCAGGTCCAGTTTGGTGGATGTGGCAGGGTGAAGACTGGCAGGAAGGCAGACAAGGGTGCGGTTGTATTTCGGAACTGAATGATGGGTCATGCACAGGAAACTTGCAGGTGATTGTGGAAGCAGACGAGGCTGACCTTGGGAAGCTTGTTCCAACTGATACTTGTGTGCATGTACACGTGGATGGTGTACTTAAGCTGTCACCGGCTCGGGCCAAGCAGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0005802 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-6_N

Protein Analysis

294

Amino Acids

33.39

Weight (kDa)

7.06

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28490 AT1G28490 AT1G28490
fragaria_vesca	FvH4_3g22850 FvH4_3g22850 FvH4_3g22850
malus_domestica	MD03G1200000.v1.1 MD11G1217000.v1.1
prunus_persica	Prupe.4G214600_v2.0.a1 Prupe.4G214600_v2.0.a1
pyrus_communis	pycom03g15170 pycom11g19090
rosa_chinensis	RchiOBHm_Chr5g0040091
rosa_laevigata	RLG00000033954
rosa_multiflora	Rmu_sc0000103.1_g000061
rosa_roxburghii	Rroxscaffold_1G00041200
rosa_rugosa	Rorug05G0183500 Rorug05G0183600
rosa_samantha	Rh5AG270000 Rh5BG273500 Rh5CG306500 Rh5DG281600
rosa_wichuraiana	Rw5G025240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	754
Acc36I	ACCTGC	2 cut(s)	650, 754
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	1 cut(s)	263
AciI	CCGC	4 cut(s)	15, 169, 274, 717
AclWI	GGATC	3 cut(s)	280, 293, 329
AcvI	CACGTG	1 cut(s)	835
AfaI	GTAC	3 cut(s)	341, 831, 846
AflII	CTTAAG	1 cut(s)	848
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	3 cut(s)	238, 430, 460
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	7 cut(s)	88, 121, 373, 403, 607, 802, 853
AluI	AGCT	7 cut(s)	88, 121, 373, 403, 607, 802, 853
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	5, 140
AlwI	GGATC	3 cut(s)	280, 293, 329
Ama87I	CYCGRG	2 cut(s)	407, 864
AoxI	GGCC	3 cut(s)	483, 504, 867
ApeKI	GCWGC	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	265, 475
AspS9I	GGNCC	4 cut(s)	394, 483, 662, 867
AsuHPI	GGTGA	6 cut(s)	41, 50, 526, 698, 778, 849
AvaI	CYCGRG	2 cut(s)	407, 864
AvaII	GGWCC	2 cut(s)	394, 662
BaeGI	GKGCMC	1 cut(s)	363
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BamHI	GGATCC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	609
BbrPI	CACGTG	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	4 cut(s)	370, 619, 734, 833
BciT130I	CCWGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	5, 140
BfaI	CTAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	848
BfuAI	ACCTGC	2 cut(s)	650, 754
BisI	GCNGC	2 cut(s)	274, 657
BlsI	GCNGC	2 cut(s)	275, 658
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	2 cut(s)	394, 662
BmeT110I	CYCGRG	2 cut(s)	407, 864
BmgT120I	GGNCC	4 cut(s)	394, 483, 662, 867
BmiI	GGNNCC	3 cut(s)	36, 287, 362
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	696
BpmI	CTGGAG	2 cut(s)	386, 464
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	80, 128
BsaAI	YACGTR	1 cut(s)	835
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	793
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 230, 260
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	665, 698
Bse3DI	GCAATG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	793
BseGI	GGATG	5 cut(s)	225, 475, 611, 681, 844
BseMI	GCAATG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	665, 698
BseRI	GAGGAG	7 cut(s)	80, 83, 131, 221, 232, 235, 437
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	3 cut(s)	485, 506, 869
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	2 cut(s)	407, 864
BsiSI	CCGG	2 cut(s)	397, 860
BslFI	GGGAC	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	5, 140
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	485, 506, 869
Bso31I	GGTCTC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	407, 864
Bsp1286I	GDGCHC	2 cut(s)	363, 609
Bsp1407I	TGTACA	1 cut(s)	829
Bsp143I	GATC	5 cut(s)	253, 278, 285, 321, 451
BspACI	CCGC	4 cut(s)	15, 169, 274, 717
BspANI	GGCC	3 cut(s)	485, 506, 869
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	36, 287, 362
BspMI	ACCTGC	2 cut(s)	650, 754
BspPI	GGATC	3 cut(s)	280, 293, 329
BspT107I	GGYRCC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	665, 698
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	1 cut(s)	793
BssMI	GATC	5 cut(s)	253, 278, 285, 321, 451
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	134, 339
Bst6I	CTCTTC	4 cut(s)	108, 194, 212, 239
BstAFI	CTTAAG	1 cut(s)	848
BstAUI	TGTACA	1 cut(s)	829
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	5 cut(s)	267, 271, 579, 650, 654
BstDEI	CTNAG	2 cut(s)	476, 882
BstF5I	GGATG	5 cut(s)	225, 475, 611, 681, 844
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	265, 475
BstKTI	GATC	5 cut(s)	256, 281, 288, 324, 454
BstMAI	GTCTC	2 cut(s)	5, 140
BstMBI	GATC	5 cut(s)	253, 278, 285, 321, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 379, 785
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	668
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	485, 506, 869
BtsCI	GGATG	5 cut(s)	225, 475, 611, 681, 844
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	2 cut(s)	650, 754
Cac8I	GCNNGC	5 cut(s)	267, 271, 579, 650, 654
CfoI	GCGC	2 cut(s)	265, 475
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	4 cut(s)	394, 483, 662, 867
Csp6I	GTAC	3 cut(s)	340, 830, 845
CviAII	CATG	3 cut(s)	31, 747, 827
CviQI	GTAC	3 cut(s)	340, 830, 845
DdeI	CTNAG	2 cut(s)	476, 882
DpnI	GATC	5 cut(s)	255, 280, 287, 323, 453
DpnII	GATC	5 cut(s)	253, 278, 285, 321, 451
Eam1104I	CTCTTC	4 cut(s)	108, 194, 212, 239
EarI	CTCTTC	4 cut(s)	108, 194, 212, 239
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	2 cut(s)	394, 662
Eco53kI	GAGCTC	1 cut(s)	607
Eco72I	CACGTG	1 cut(s)	835
Eco88I	CYCGRG	2 cut(s)	407, 864
EcoICRI	GAGCTC	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	793
EcoT38I	GRGCYC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	793
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	34, 750, 830
FaiI	YATR	4 cut(s)	32, 494, 748, 828
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	3 cut(s)	30, 746, 826
Fnu4HI	GCNGC	2 cut(s)	274, 657
FokI	GGATG	5 cut(s)	212, 482, 598, 688, 851
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	2 cut(s)	274, 657
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	2 cut(s)	264, 474
GluI	GCNGC	2 cut(s)	274, 657
GsuI	CTGGAG	2 cut(s)	386, 464
HaeIII	GGCC	3 cut(s)	485, 506, 869
HapII	CCGG	2 cut(s)	397, 860
HhaI	GCGC	2 cut(s)	265, 475
Hin1II	CATG	3 cut(s)	34, 750, 830
Hin6I	GCGC	2 cut(s)	263, 473
HinP1I	GCGC	2 cut(s)	263, 473
HindIII	AAGCTT	2 cut(s)	401, 800
HinfI	GANTC	2 cut(s)	161, 544
HpaII	CCGG	2 cut(s)	397, 860
HphI	GGTGA	6 cut(s)	41, 50, 526, 698, 778, 849
Hpy166II	GTNNAC	2 cut(s)	832, 845
Hpy188I	TCNGA	3 cut(s)	600, 616, 730
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	832, 845
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	5 cut(s)	382, 430, 454, 695, 871
HpyCH4III	ACNGT	2 cut(s)	134, 339
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	3 cut(s)	750, 763, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 379, 785
HpyF3I	CTNAG	2 cut(s)	476, 882
HpySE526I	ACGT	1 cut(s)	834
Hsp92II	CATG	3 cut(s)	34, 750, 830
HspAI	GCGC	2 cut(s)	263, 473
Kzo9I	GATC	5 cut(s)	253, 278, 285, 321, 451
LmnI	GCTCC	5 cut(s)	34, 93, 118, 379, 612
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	2 cut(s)	541, 855
MalI	GATC	5 cut(s)	255, 280, 287, 323, 453
MboI	GATC	5 cut(s)	253, 278, 285, 321, 451
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	363, 609
MlyI	GAGTC	2 cut(s)	155, 538
MmeI	TCCRAC	1 cut(s)	833
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	837
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	2 cut(s)	397, 860
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	23, 379, 785
NdeII	GATC	5 cut(s)	253, 278, 285, 321, 451
NlaIII	CATG	3 cut(s)	34, 750, 830
NlaIV	GGNNCC	3 cut(s)	36, 287, 362
NmuCI	GTSAC	2 cut(s)	541, 855
NspI	RCATGY	1 cut(s)	830
PaqCI	CACCTGC	1 cut(s)	754
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	275, 658
PleI	GAGTC	2 cut(s)	155, 538
PmaCI	CACGTG	1 cut(s)	835
PmlI	CACGTG	1 cut(s)	835
PpsI	GAGTC	2 cut(s)	155, 538
Ppu21I	YACGTR	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	363
PspCI	CACGTG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	36, 287, 362
PspPI	GGNCC	4 cut(s)	394, 483, 662, 867
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	3 cut(s)	341, 831, 846
RsaNI	GTAC	3 cut(s)	340, 830, 845
RseI	CAYNNNNRTG	1 cut(s)	837
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	2 cut(s)	274, 657
Sau3AI	GATC	5 cut(s)	253, 278, 285, 321, 451
Sau96I	GGNCC	4 cut(s)	394, 483, 662, 867
SchI	GAGTC	2 cut(s)	155, 538
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	363, 609
SfaNI	GCATC	1 cut(s)	460
SinI	GGWCC	2 cut(s)	394, 662
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	3 cut(s)	95, 143, 848
SmoI	CTYRAG	3 cut(s)	95, 143, 848
SsiI	CCGC	4 cut(s)	15, 169, 274, 717
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	2 cut(s)	134, 339
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	3 cut(s)	159, 256, 420
TaqII	GACCGA	1 cut(s)	362
TatI	WGTACW	2 cut(s)	829, 844
TauI	GCSGC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	541, 855
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	2 cut(s)	541, 855
TspDTI	ATGAA	1 cut(s)	181
TspGWI	ACGGA	2 cut(s)	154, 368
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	164
Vha464I	CTTAAG	1 cut(s)	848
VpaK11BI	GGWCC	2 cut(s)	394, 662
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.