FvH4_3g23040

Encoded by

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
16151545 .. 16152601
1057 bp
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UTR
Exon/CDS
Intron
FvH4_3g23040.t1

Sequence Viewer

Length: 528 bp
ATGGGTACTGCTACTGCTACTTCGAGTTCTAAGTTGCTGCTTCTTGTGCTTTTTGGTGCTTTCATTTTCACAACTGGTGCAAGCAGGAAGCTTGGAAGTGCTGAAAAGGGTTCCTTTGGTGATGAGAAAACTATCTATCGCCACCCACGTCTTGGTGGAGGCGGTGGTGGACTTGGAGGGGGAGGAGGGCTAGGCGGTGGTGGCGGAGCCGGTGCTGGAGGAGGAGCTGGATTCGGAGGTGGTGCTGGAGCGGGAGCTGGTGGCGGTCTTGGCGGAGGTGGTGGACTCGGTGGAGGCGGTGGGGGAGGCTTTGGAGGTGGTGGTGGAGGAGGAGTAGGTGGTGGATCTGGTTTTGGAGGAGGAGCTGGTGGAGGGTTTGGAGCGGGAGGTGGTGCTGGTGGTGGAGCTGGGGGAGGAGGTGGTGGAGGCTTTGGAGGCGGTGGTGGTGGAGGACTTGGGGGTGGAGCAGGCGGAGGCTTCGGTGGAGGAGCTGGTGCCGGTGGTGGGTTTGGAGGTGGATTGCCTTGA

Protein Analysis

176

Amino Acids

13.77

Weight (kDa)

10.16

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20470
fragaria_vesca FvH4_3g23040
prunus_persica Prupe.4G216800_v2.0.a1
pyrus_communis pycom11g18870
rosa_chinensis RchiOBHm_Chr5g0040571
rosa_laevigata RLG00000033988
rosa_multiflora Rmu_sc0010369.1_g000003 Rmu_sc0031031.1_g000001
rosa_roxburghii Rroxscaffold_1G00040100 Rroxscaffold_1G00040830
rosa_rugosa Rorug05G0185700.1
rosa_samantha Rh5DG285100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 152
AccBSI CCGCTC 2 cut(s) 251, 383
AclWI GGATC 1 cut(s) 352
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 152, 504
AjiI CACGTC 1 cut(s) 149
AluBI AGCT 6 cut(s) 91, 227, 257, 365, 407, 491
AluI AGCT 6 cut(s) 91, 227, 257, 365, 407, 491
AlwI GGATC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 494
BbvI GCAGC 1 cut(s) 24
BfaI CTAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmgBI CACGTC 1 cut(s) 149
BmiI GGNNCC 3 cut(s) 112, 208, 496
BpmI CTGGAG 2 cut(s) 237, 267
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 504
Bse118I RCCGGY 2 cut(s) 209, 497
Bse1I ACTGG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 152, 504
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 9 cut(s) 198, 234, 237, 342, 345, 372, 375, 429, 501
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 494
BsiSI CCGG 2 cut(s) 210, 498
BslI CCNNNNNNNGG 2 cut(s) 152, 504
Bsp143I GATC 1 cut(s) 344
BspLI GGNNCC 3 cut(s) 112, 208, 496
BspPI GGATC 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 494
BsrBI CCGCTC 2 cut(s) 251, 383
BsrFI RCCGGY 2 cut(s) 209, 497
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 2 cut(s) 209, 497
BssMI GATC 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 82, 469
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 4 cut(s) 46, 201, 270, 435
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BtrI CACGTC 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 82, 469
Cfr10I RCCGGY 2 cut(s) 209, 497
Csp6I GTAC 1 cut(s) 6
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
EciI GGCGGA 3 cut(s) 219, 288, 486
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FauI CCCGC 2 cut(s) 244, 376
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 191
GluI GCNGC 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 2 cut(s) 237, 267
HapII CCGG 2 cut(s) 210, 498
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 2 cut(s) 231, 285
HpaII CCGG 2 cut(s) 210, 498
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 170, 284
Hpy188I TCNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 170, 284
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 201, 270, 435
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 148
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 9 cut(s) 206, 224, 248, 254, 362, 380, 404, 464, 488
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 148
MalI GATC 1 cut(s) 346
MbiI CCGCTC 2 cut(s) 251, 383
MboI GATC 1 cut(s) 344
MflI RGATCY 1 cut(s) 344
MlyI GAGTC 1 cut(s) 279
MspI CCGG 2 cut(s) 210, 498
MwoI GCNNNNNNNGC 4 cut(s) 46, 201, 270, 435
NdeII GATC 1 cut(s) 344
NlaIV GGNNCC 3 cut(s) 112, 208, 496
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PfeI GAWTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 112, 208, 496
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 344
SchI GAGTC 1 cut(s) 279
SspMI CTAG 1 cut(s) 191
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 23
TfiI GAWTC 1 cut(s) 231
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.