RchiOBHm_Chr5g0040571

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
35226270 .. 35227294
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31907

Sequence Viewer

Length: 528 bp
ATGAGTACTACTGCTACTTCTAGTTTTAGGCTTCTTCTTCTTGTGCTTTTTGGTGCTTTCATTTTCACCACTGGTGAAAGCAGGAAGCTTGGAAGTGATCAAAAAGGTACCTTTGGCGATGAGAAAAATTTATATCGCCACCCAGGTCTTGGAGGAGGCGGTGGGGGTCTGGGTGGTGGAGGCGGTGGTGGGCTTGGAGGAGGAGGAGGGCTAGGCGGTGGTGGCGGAGCTGGTGCAGGAGGAGGAGCTGGCTTCGGAGGTGGTGCTGGAGCGGGAGCTGGTGGGGTCTTGGTGGAGGCGGTGGGGGAGGCTTTGGTGGTGGAGGTGGCGGAGGAGTGGGCGGTGGATCTGGTTTTGGAGGAGGAGCTGGTGGAGGCTTTGGAGCGGGGGTGGTGCCGGTGGTGGAGCTGGAGGTGGTGGCGGAGGAGGGTTCGGAGGTGGTGGCGGTGGAGGACTTGGGGCGGAGCAGGAGGAGGCTTCGGTGGAGGAGCTGGTGCCGGTGGTGGGTTTGGAGGTGGATTGCCTTGA

Protein Analysis

175

Amino Acids

17.44

Weight (kDa)

7.94

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20470
fragaria_vesca FvH4_3g23040
prunus_persica Prupe.4G216800_v2.0.a1
pyrus_communis pycom11g18870
rosa_chinensis RchiOBHm_Chr5g0040571
rosa_laevigata RLG00000033988
rosa_multiflora Rmu_sc0010369.1_g000003 Rmu_sc0031031.1_g000001
rosa_roxburghii Rroxscaffold_1G00040100 Rroxscaffold_1G00040830
rosa_rugosa Rorug05G0185700.1
rosa_samantha Rh5DG285100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 3 cut(s) 107, 393, 494
AccB7I CCANNNNNTGG 1 cut(s) 149
AccBSI CCGCTC 2 cut(s) 272, 385
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 2 cut(s) 7, 109
AfiI CCNNNNNNNGG 2 cut(s) 149, 504
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 7 cut(s) 88, 230, 248, 278, 367, 408, 491
AluI AGCT 7 cut(s) 88, 230, 248, 278, 367, 408, 491
AlwI GGATC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 127
Asp718I GGTACC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 58, 86
BanI GGYRCC 3 cut(s) 107, 393, 494
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 97
BfaI CTAG 2 cut(s) 21, 212
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 109, 395, 496
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 288, 430
BsaJI CCNNGG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 504
Bse118I RCCGGY 2 cut(s) 396, 497
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 149, 504
BseNI ACTGG 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 255
BshNI GGYRCC 3 cut(s) 107, 393, 494
BsiSI CCGG 2 cut(s) 397, 498
BslI CCNNNNNNNGG 2 cut(s) 149, 504
Bsp143I GATC 2 cut(s) 97, 346
BspLI GGNNCC 3 cut(s) 109, 395, 496
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 3 cut(s) 107, 393, 494
BsrBI CCGCTC 2 cut(s) 272, 385
BsrFI RCCGGY 2 cut(s) 396, 497
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 2 cut(s) 396, 497
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 97, 346
Bst2UI CCWGG 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 100, 349
BstMBI GATC 2 cut(s) 97, 346
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 250
Cfr10I RCCGGY 2 cut(s) 396, 497
Csp6I GTAC 2 cut(s) 6, 108
CviQI GTAC 2 cut(s) 6, 108
DpnI GATC 2 cut(s) 99, 348
DpnII GATC 2 cut(s) 97, 346
EciI GGCGGA 4 cut(s) 240, 344, 436, 477
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 1 cut(s) 133
FauI CCCGC 2 cut(s) 265, 378
FbaI TGATCA 1 cut(s) 97
FspBI CTAG 2 cut(s) 21, 212
GsuI CTGGAG 2 cut(s) 288, 430
HapII CCGG 2 cut(s) 397, 498
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 2 cut(s) 397, 498
HphI GGTGA 2 cut(s) 58, 86
Hpy188I TCNGA 2 cut(s) 257, 435
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
KpnI GGTACC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 97, 346
LmnI GCTCC 9 cut(s) 227, 245, 269, 275, 364, 382, 405, 464, 488
MaeI CTAG 2 cut(s) 21, 212
MalI GATC 2 cut(s) 99, 348
MbiI CCGCTC 2 cut(s) 272, 385
MboI GATC 2 cut(s) 97, 346
MboII GAAGA 2 cut(s) 26, 29
MflI RGATCY 1 cut(s) 346
MluCI AATT 1 cut(s) 127
MspI CCGG 2 cut(s) 397, 498
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 2 cut(s) 97, 346
NlaIV GGNNCC 3 cut(s) 109, 395, 496
PflMI CCANNNNNTGG 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 109, 395, 496
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 2 cut(s) 7, 109
RsaNI GTAC 2 cut(s) 6, 108
Sau3AI GATC 2 cut(s) 97, 346
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 144
Sse9I AATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 21, 212
StyD4I CCNGG 1 cut(s) 142
TasI AATT 1 cut(s) 127
TatI WGTACW 1 cut(s) 5
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 2 cut(s) 21, 212
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.