Rroxscaffold_1G00040830

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
58611666 .. 58613245
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040830.1

Sequence Viewer

Length: 564 bp
ATGAGTACTACTGCTACTTCTAGTTGTAGGCTTCTTCTTCTTGTGCTTTTTGGTGCTTTCATTTTCACCACTGGTGCAAGCAGGAAGCTTGGAAGTGATCAAAAAGGTTCCTTTGGCGATGAGAAAAATTTATATCGCCACCCAGGTCTTGGAGGAGGCGGTGGGGGTCTGGGTGGTGGAGGCGGTGGTGGGCTTGGAGGAGGAGGAGGGCTAGGCGGTGGTGGCGGAGCTGGTGCCGGAGGAGGAGCTGGCTTCGGAGGTGGTGCTGGAGCGGGAGCTGGTGGGGGTCTTGGTGGAGGCGGTGGGGGAGGCTTTGGTGGTGGAGGTGGCGGAGGAGTGGGCGGTGGATCTGGTTTTGGAGGAGGAGCTGGTGGAGGCTTTGGAGCGGGGGGTGGTGCTGGTGGTGGAGCTGGAGGCGGTGGCGGAGGAGGGTTCGGAGGTGGTGGCGGTGGAGGACTTGGGGGCGGAGCAGGAGGAGGCTTCGGTGGAGGAGCTGGTGCTGGTGGTGGGATTAAAGCTGATGAGTTGTCAAATGATCTCAGCCGCGGAGCCACCACCACCTAG

Protein Analysis

187

Amino Acids

15.09

Weight (kDa)

9.03

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20470
fragaria_vesca FvH4_3g23040
prunus_persica Prupe.4G216800_v2.0.a1
pyrus_communis pycom11g18870
rosa_chinensis RchiOBHm_Chr5g0040571
rosa_laevigata RLG00000033988
rosa_multiflora Rmu_sc0010369.1_g000003 Rmu_sc0031031.1_g000001
rosa_roxburghii Rroxscaffold_1G00040100 Rroxscaffold_1G00040830
rosa_rugosa Rorug05G0185700.1
rosa_samantha Rh5DG285100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 149
AccBSI CCGCTC 2 cut(s) 272, 386
AccII CGCG 1 cut(s) 546
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 149
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 8 cut(s) 88, 230, 248, 278, 368, 410, 494, 518
AluI AGCT 8 cut(s) 88, 230, 248, 278, 368, 410, 494, 518
AlwI GGATC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 97
BfaI CTAG 3 cut(s) 21, 212, 562
BisI GCNGC 1 cut(s) 544
BlsI GCNGC 1 cut(s) 545
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 109, 235, 550
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 288, 432
BsaJI CCNNGG 2 cut(s) 142, 544
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 142, 544
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 546
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 149
Bsp143I GATC 3 cut(s) 97, 347, 535
BspCNI CTCAG 1 cut(s) 552
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 109, 235, 550
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 233
BsrBI CCGCTC 2 cut(s) 272, 386
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 142, 544
BssMI GATC 3 cut(s) 97, 347, 535
Bst2UI CCWGG 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 79, 250
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 3 cut(s) 100, 350, 538
BstMBI GATC 3 cut(s) 97, 347, 535
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstUI CGCG 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 79, 250
Cfr42I CCGCGG 1 cut(s) 547
Csp6I GTAC 1 cut(s) 6
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 539
DpnI GATC 3 cut(s) 99, 349, 537
DpnII GATC 3 cut(s) 97, 347, 535
EciI GGCGGA 4 cut(s) 240, 345, 438, 480
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 1 cut(s) 133
FauI CCCGC 2 cut(s) 265, 379
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 544
Fsp4HI GCNGC 1 cut(s) 544
FspBI CTAG 3 cut(s) 21, 212, 562
GluI GCNGC 1 cut(s) 544
GsuI CTGGAG 2 cut(s) 288, 432
HapII CCGG 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 257, 437
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 539
Ksp22I TGATCA 1 cut(s) 97
KspI CCGCGG 1 cut(s) 547
Kzo9I GATC 3 cut(s) 97, 347, 535
MaeI CTAG 3 cut(s) 21, 212, 562
MalI GATC 3 cut(s) 99, 349, 537
MbiI CCGCTC 2 cut(s) 272, 386
MboI GATC 3 cut(s) 97, 347, 535
MboII GAAGA 2 cut(s) 26, 29
MflI RGATCY 1 cut(s) 347
MluCI AATT 1 cut(s) 127
MseI TTAA 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 546
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 3 cut(s) 97, 347, 535
NlaIV GGNNCC 3 cut(s) 109, 235, 550
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 109, 235, 550
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SacII CCGCGG 1 cut(s) 547
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 1 cut(s) 544
Sau3AI GATC 3 cut(s) 97, 347, 535
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 144
Sfr303I CCGCGG 1 cut(s) 547
SgrBI CCGCGG 1 cut(s) 547
Sse9I AATT 1 cut(s) 127
SspMI CTAG 3 cut(s) 21, 212, 562
StyD4I CCNGG 1 cut(s) 142
TasI AATT 1 cut(s) 127
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 546
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 3 cut(s) 21, 212, 562
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.