Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017554

Physical Location & Seq

Genomic Coordinates Forward (+)

35072513 .. 35073079

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGTACGACTACTGCTTCTAGTTCTAGGCTTCTTCTTCTTGTACTTTTTGGTGCTTTCGTTTTCACTACTGGTGCAAGCAGGAAGCTTGGAAGTGATCAAAAAGGTTCCTTTGGCGATGGGAAAAATTTATATCGCCACCCACGTCTTGGAGGAGGCGGTGGGGGTCTGGGTGGAGGAGGCGGTGGTGGGCTTGGAGGAGGAGGAGGGCTAGGTGGTGGTGGCGGAGCTGGTGCGGGAGGAGGAGCTGGCTTCGGAGGTGGTGCTGGAGCGGGAGCTGGTGGGGGTCTTGGCGGAGCTGGTGGTCTTGGTGGTCTTGGTGGTCTTGGTGGAGGCGGTGGGGGAGGCTTTGGTGGTGGAGGTGGCGGAGGAGTGGGCGGTGGATCTGGTTTTGGAGGAGGAGCAGGTGGAGGCTTTGGAGCGGGGGGTGGTGCTGGTGGTGGAGCTGGAGGCGGTGGCGGAGGAGGGTTCGGAGGTGGTGGCGGTGGAGGACTTGGGGGCGGAGCAGGAGGAGGTTTCGGTGGAGGAGCTGGTTCCGGTGGTGGGTTTGGAGGTGGATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0001558 GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0008150 GO:0009413 GO:0009415 GO:0009505 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0010033 GO:0010035 GO:0014070 GO:0030307 GO:0030312 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0046620 GO:0046622 GO:0046677 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051239 GO:0051240 GO:0065007 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

14.72

Weight (kDa)

11.0

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017554)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20470
fragaria_vesca	FvH4_3g23040
prunus_persica	Prupe.4G216800_v2.0.a1
pyrus_communis	pycom11g18870
rosa_chinensis	RchiOBHm_Chr5g0040571
rosa_laevigata	RLG00000033988
rosa_multiflora	Rmu_sc0010369.1_g000003 Rmu_sc0031031.1_g000001
rosa_roxburghii	Rroxscaffold_1G00040100 Rroxscaffold_1G00040830
rosa_rugosa	Rorug05G0185700.1
rosa_samantha	Rh5DG285100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccBSI	CCGCTC	2 cut(s)	272, 422
AclWI	GGATC	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	2 cut(s)	7, 45
AfiI	CCNNNNNNNGG	2 cut(s)	149, 543
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	7 cut(s)	88, 230, 248, 278, 299, 446, 530
AluI	AGCT	7 cut(s)	88, 230, 248, 278, 299, 446, 530
AlwI	GGATC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	127
BccI	CCATC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	3 cut(s)	21, 27, 212
BfuAI	ACCTGC	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	109, 535
BpmI	CTGGAG	2 cut(s)	288, 468
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 543
Bse1I	ACTGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	149, 543
BseNI	ACTGG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	149, 543
Bsp143I	GATC	2 cut(s)	97, 383
BspLI	GGNNCC	2 cut(s)	109, 535
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	391
BsrBI	CCGCTC	2 cut(s)	272, 422
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	97, 383
BstC8I	GCNNGC	2 cut(s)	79, 250
BstKTI	GATC	2 cut(s)	100, 386
BstMBI	GATC	2 cut(s)	97, 383
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	132
BtrI	CACGTC	1 cut(s)	146
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	79, 250
Csp6I	GTAC	2 cut(s)	6, 44
CviQI	GTAC	2 cut(s)	6, 44
DpnI	GATC	2 cut(s)	99, 385
DpnII	GATC	2 cut(s)	97, 383
EciI	GGCGGA	5 cut(s)	240, 309, 381, 474, 516
FaiI	YATR	1 cut(s)	133
FauI	CCCGC	3 cut(s)	229, 265, 415
FbaI	TGATCA	1 cut(s)	97
FspBI	CTAG	3 cut(s)	21, 27, 212
GsuI	CTGGAG	2 cut(s)	288, 468
HapII	CCGG	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	1 cut(s)	537
Hpy188I	TCNGA	2 cut(s)	257, 473
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	97, 383
MaeI	CTAG	3 cut(s)	21, 27, 212
MaeII	ACGT	1 cut(s)	145
MalI	GATC	2 cut(s)	99, 385
MbiI	CCGCTC	2 cut(s)	272, 422
MboI	GATC	2 cut(s)	97, 383
MboII	GAAGA	2 cut(s)	26, 29
MflI	RGATCY	1 cut(s)	383
MluCI	AATT	1 cut(s)	127
MspI	CCGG	1 cut(s)	537
NdeII	GATC	2 cut(s)	97, 383
NlaIV	GGNNCC	2 cut(s)	109, 535
PaqCI	CACCTGC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	109, 535
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	2 cut(s)	7, 45
RsaNI	GTAC	2 cut(s)	6, 44
Sau3AI	GATC	2 cut(s)	97, 383
Sse9I	AATT	1 cut(s)	127
SspMI	CTAG	3 cut(s)	21, 27, 212
TaiI	ACGT	1 cut(s)	148
TasI	AATT	1 cut(s)	127
TatI	WGTACW	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XspI	CTAG	3 cut(s)	21, 27, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.