Rh5DG285100

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
35285334 .. 35287786
2453 bp
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UTR
Exon/CDS
Intron
Rh5DG285100.1

Sequence Viewer

Length: 531 bp
ATGAGTACTACTGCTACTTCTAGTTTTAGGCTTCTTCTTCTTGTGCTTTTTGGTGCTTTCATTTTCACCACTGGTGAAAGCAGGAAGCTTGGAAGTGATCAAAAAGGTACCTTTGGCGATGAGAAAAATTTATATCGCCACCCAGGTCTTGGGGGAGGCGGTGGGGGTCTGGGTGGTGGGGGCGGTGGTGGGCTTGGAGGAGGAGGAGGGCTAGGCGGTGGTGGCGGAGCTGGTGCAGGAGGAGGTGCTGGCTTCGGAGGTGGTGCTGGAGCGGGAGCTGGTGGGGGTCTTGGTGGAGGCGGTGGGGGAGGCTTTGGTGGTGGAGGTGGCGGAGGAGTGGGCGGTGGATCTGGTTTTGGAGGAGGAGCTGGTGGAGGCTTTGGAGCGGGGGGTGGTGCCGGTGGTGGAGCTGGAGGCGGTGGCGGAGGAGGGTTCGGAGGTGGTGGCGGTGGAGGACTTGGGGGCGGAGCAGGAGGAGGTTTCGGTGGAGGAGCTGGTGCCGGTGGTGGGTTTGGAGGTGGATTGCCTTGA

Protein Analysis

176

Amino Acids

13.96

Weight (kDa)

9.52

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20470
fragaria_vesca FvH4_3g23040
prunus_persica Prupe.4G216800_v2.0.a1
pyrus_communis pycom11g18870
rosa_chinensis RchiOBHm_Chr5g0040571
rosa_laevigata RLG00000033988
rosa_multiflora Rmu_sc0010369.1_g000003 Rmu_sc0031031.1_g000001
rosa_roxburghii Rroxscaffold_1G00040100 Rroxscaffold_1G00040830
rosa_rugosa Rorug05G0185700.1
rosa_samantha Rh5DG285100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 3 cut(s) 107, 395, 497
AccB7I CCANNNNNTGG 1 cut(s) 149
AccBSI CCGCTC 2 cut(s) 272, 386
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 2 cut(s) 7, 109
AfiI CCNNNNNNNGG 2 cut(s) 149, 507
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 6 cut(s) 88, 230, 278, 368, 410, 494
AluI AGCT 6 cut(s) 88, 230, 278, 368, 410, 494
AlwI GGATC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 127
Asp718I GGTACC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 58, 86
BanI GGYRCC 3 cut(s) 107, 395, 497
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 97
BfaI CTAG 2 cut(s) 21, 212
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 3 cut(s) 109, 397, 499
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 288, 432
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 507
Bse118I RCCGGY 2 cut(s) 398, 500
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 149, 507
BseNI ACTGG 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 255
BshNI GGYRCC 3 cut(s) 107, 395, 497
BsiSI CCGG 2 cut(s) 399, 501
BslI CCNNNNNNNGG 2 cut(s) 149, 507
Bsp143I GATC 2 cut(s) 97, 347
BspLI GGNNCC 3 cut(s) 109, 397, 499
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 3 cut(s) 107, 395, 497
BsrBI CCGCTC 2 cut(s) 272, 386
BsrFI RCCGGY 2 cut(s) 398, 500
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 2 cut(s) 398, 500
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 97, 347
Bst2UI CCWGG 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 100, 350
BstMBI GATC 2 cut(s) 97, 347
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BtgZI GCGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 250
Cfr10I RCCGGY 2 cut(s) 398, 500
Csp6I GTAC 2 cut(s) 6, 108
CviQI GTAC 2 cut(s) 6, 108
DpnI GATC 2 cut(s) 99, 349
DpnII GATC 2 cut(s) 97, 347
EciI GGCGGA 4 cut(s) 240, 345, 438, 480
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 1 cut(s) 133
FauI CCCGC 2 cut(s) 265, 379
FbaI TGATCA 1 cut(s) 97
FspBI CTAG 2 cut(s) 21, 212
GsuI CTGGAG 2 cut(s) 288, 432
HapII CCGG 2 cut(s) 399, 501
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 2 cut(s) 399, 501
HphI GGTGA 2 cut(s) 58, 86
Hpy188I TCNGA 2 cut(s) 257, 437
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
KpnI GGTACC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 97, 347
LmnI GCTCC 8 cut(s) 227, 269, 275, 365, 383, 407, 467, 491
MaeI CTAG 2 cut(s) 21, 212
MalI GATC 2 cut(s) 99, 349
MbiI CCGCTC 2 cut(s) 272, 386
MboI GATC 2 cut(s) 97, 347
MboII GAAGA 2 cut(s) 26, 29
MflI RGATCY 1 cut(s) 347
MluCI AATT 1 cut(s) 127
MspI CCGG 2 cut(s) 399, 501
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 2 cut(s) 97, 347
NlaIV GGNNCC 3 cut(s) 109, 397, 499
PflMI CCANNNNNTGG 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 3 cut(s) 109, 397, 499
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 2 cut(s) 7, 109
RsaNI GTAC 2 cut(s) 6, 108
Sau3AI GATC 2 cut(s) 97, 347
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 144
Sse9I AATT 1 cut(s) 127
SspMI CTAG 2 cut(s) 21, 212
StyD4I CCNGG 1 cut(s) 142
TasI AATT 1 cut(s) 127
TatI WGTACW 1 cut(s) 5
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 2 cut(s) 21, 212
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.