Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015364

Physical Location & Seq

Genomic Coordinates Forward (+)

17670760 .. 17675644

Gene Structure 4885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2619 bp

ATGACCGCAAAGCCCGGTCTGAGGAGCCTCGCTGCAGTCTCTTACACAAGCCTCTCTCTCTCCTCTCCCTCCAAACCTCTCTCTCGCTCTCGCTCTCGCTCCCACTCTCTTATCCATTCCCCTCCAAAACGCATCTCCACTCCAAACGCCCACCACCTGTTCGACAAAACTCCCCACAGAGACCCCTTCGAATACACCCGCTTGCTCTTCCACTACACTCGCAATGACCGCAACCATGACGCCATCAGCCTCTTCGTGGCCGCTTCCCGGGCCGGTTTACCCGTCAATGGGCCCGTTCTGTCTTCCGTGGCCAAGGCCTGCGGGAGCTTGCGTGACCAAGTTGTGGGCAGACAGGTGCATTGCCAGTGTGTCAAGTCCGGGCTCGGGGAAGACGTCAGTGTTGGGTCCTCATTAGTGGACATGTATATGAAGAGTAGCGAGGGTGTTGTGGAGGGGAGGAGAGTGTTTGATGAGATGAGGGAGAGAAATGTGGTGTCATGGACTTCGTTAATTTCGGGCTATGCGTGGAACGGGTGGAATGAGCAGGCGTTGGAGCTGTTTACGGAGATGCAGGCGAGTGGGAGCATGGCGAATCCGTTTGCGTATGTGGCTGTGCTTGGAGTTTTGGCCGATGAGGGGTCGGTTGGGAAGGGGGAGCAGGTCCATGGCATGGTTGTGAAGAATGGTTATGTGGCGATCACGTTTGTGTGCAATTCGTTGGTTAATATGTATTTCAAGTCGGGGATGGTTAGTGAGGCTAGAGCTGTTTTTGATGGTATGGAGTGTAGGGATGAGGTTACATGGAATACCTTAATTGCAGGATATGTGGGCAATGGGCTTGAGTTGGAAGCTTTTGAAATGTTTTATCTGATGGGGCTTGCAGGTGTTAAGTTTACACAACCGGTATTTGTTACTGTTATTAAGCTATGTGCTAGCTATGAAGAATTGGGTTTTGCAAGACAGCTACATTGCCGTGTTTTGAAGAGTGGGTTGGAGTCTCATCGTAATATTGAAACAGCACTCCTGGTGGCTTACAGTAAGTGCAGGGAAATGGACGATGCTTTTAATATGTTCTCCATGATGCAGGGTGTTAAAAGTGTAGTAACTTGGACGGCCATGATCAGTGGGTACTTGCAGAATGGTGGAACAGAGAAAGGAGTCAAGTTATTCTGTGAAATGAGCAGAGAAGGTGTTAGACAGAATGATTTTACGTATTCTGTCATCATTATGGCCCATCCTTTTATATCTATATCCCAAGTACAGGCACAAGTCATTAAAACCAATTATGAGAAGTCACCTTCTGTAGGAACTTCACTCATAGACGCTTATGTTAAGACCGGAAGTATTCCTGAAGCTGAAAAAGTTTTCCAAACAATTGACGAGAAGGATATTGTAGCATGGTCTGCAATGCTTGCTGGATATGCTCAAATAGAAGACGCGGTGGGAGCTATTAAAATTTTTCTCCAGTTGACAAGAAAGGGGGTCAGACCTAATGAGTTCACTTTATCTAGTATCATTAATGCTTGCGCTGGACCTTCGGCAACAGTGGAGCAGGGCAAACAATTTCATGCTTGCTCGATCAAACTCAGGTTGAACAATACTCTGTGTCTAAGTAGTGCTCTTGTCACCATGTACGCAAAGATGGGGAATATTGAAAGTGCAAATGAAGTTTTCAAGAGACAAGGAGAGAGAGACTTAGTTTCCTGGAACTCTATGATCTCTGGATATGCACAACATGGTCAGGGTAATAAGGTTCTTGAAGTATTTGAGGAGATGCGTAGGCAAAATTTGGAAATAGATGGGATAACATTCATTCTCATCATCTCTGCCTGTACTCATGCAGGCTTAGTAGATGAAGGTAAAAGGTATTTCAAAATGATGGTTCAAGATTACCATATTGATCCAACAATGGGGCACTATTCTTGTATGGTTGATCTGTACAGCCGAGCCGGAAAGCTTGAAAAAGCGATGAATCTTATAAACAGCATGCCCTGTACTGCAGATGCAAATGTGTGGAGAGCTCTCTTGGGTGCTTGCCGTGTTCACCGCAACTTAGAGCTCGGAAAACTCGCGGCAGAAAAGCTCATTTCACTTCAGCCACAAGACTCTGCTGCTTATGTTCTGTTGTCCAACATTTATGCTGCAGCTGGAAACTGGCAAGAGAGAGATAAAGTGAGGAGGTTGATGAATGAAAGAAAAGTGAAAAAGCAACCTGGGTATAGCTGGATTGAGGTGAAGAACAAGACTTACATATTCTTGGCTGGTGATGTTTCACATCCCTTATCAGACCATATATACTCAAAACTTGACGAGTTAAATAACCGATTGAAGGATATGGGTTATCAGCCTGATACTGACTATGTACTCCATGATGTTGAAGAGGAACACAAAGCAGCCTTTCTTTATCAACACAGTGAGAGGCTAGCCATTGCTTTTGGATTGATTGCCAAACCTCCAAGATCTCCTATCCAGATTTTGAAAAATCTTAGGGTATGTGGAGACTGTCACACTGTTATTAAATTAATTTCGGTGATAGAAGCGAGAGATATTGTTGTCAGAGATTCAAACCGATACCACCACTTCAAGAATGGTTTATGCTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

873

Amino Acids

97.21

Weight (kDa)

8.22

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	162 - 210	2.1e-07	PPR repeat family
PPR	PF01535	165 - 194	2.5e-07	PPR repeat
PPR_2	PF13041	366 - 409	1.4e-12	PPR repeat family
PPR	PF01535	368 - 398	8.5e-08	PPR repeat
PPR_2	PF13041	462 - 510	8e-09	PPR repeat family
PPR_2	PF13041	565 - 612	2.2e-11	PPR repeat family
PPR	PF01535	567 - 596	2e-09	PPR repeat
E_motif	PF20431	682 - 744	4.9e-20	E motif
Eplus_motif	PF20430	749 - 776	6.2e-07	E+ motif
DYW_deaminase	PF14432	780 - 872	8.2e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27610
fragaria_vesca	FvH4_3g24581
prunus_persica	Prupe.6G127000_v2.0.a1
pyrus_communis	pycom11g13360
rosa_chinensis	RchiOBHm_Chr5g0044141
rosa_laevigata	RLG00000034246
rosa_multiflora	Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036910
rosa_rugosa	Rorug05G0210800
rosa_samantha	Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana	Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1979
AarI	CACCTGC	1 cut(s)	872
AatII	GACGTC	1 cut(s)	396
Acc36I	ACCTGC	2 cut(s)	649, 872
AccB7I	CCANNNNNTGG	2 cut(s)	343, 670
AccII	CGCG	2 cut(s)	1439, 2072
AciI	CCGC	8 cut(s)	6, 199, 229, 261, 321, 1439, 2047, 2072
AclWI	GGATC	1 cut(s)	1895
AcoI	YGGCCR	4 cut(s)	258, 309, 627, 1113
AcsI	RAATTY	2 cut(s)	1455, 1786
AcuI	CTGAAG	2 cut(s)	1371, 2078
AcyI	GRCGYC	2 cut(s)	240, 393
AfaI	GTAC	7 cut(s)	1130, 1260, 1634, 1834, 1940, 1996, 2364
AflIII	ACRYGT	1 cut(s)	420
AgeI	ACCGGT	1 cut(s)	901
AjnI	CCWGG	3 cut(s)	1023, 1703, 2212
AjuI	GAANNNNNNNTTGG	2 cut(s)	974, 1006
AleI	CACNNNNGTG	1 cut(s)	704
Alw21I	GWGCWC	3 cut(s)	1621, 2023, 2061
Alw26I	GTCTC	6 cut(s)	43, 174, 1002, 1672, 1686, 2493
AlwI	GGATC	1 cut(s)	1895
Ama87I	CYCGRG	2 cut(s)	267, 383
AoxI	GGCC	8 cut(s)	258, 270, 290, 309, 315, 627, 1113, 1230
ApaI	GGGCCC	1 cut(s)	294
ApeKI	GCWGC	5 cut(s)	32, 2111, 2141, 2144, 2393
ApoI	RAATTY	2 cut(s)	1455, 1786
AseI	ATTAAT	2 cut(s)	1518, 2522
AsiGI	ACCGGT	1 cut(s)	901
AspLEI	GCGC	1 cut(s)	1529
AspS9I	GGNCC	7 cut(s)	270, 290, 291, 405, 661, 1231, 1532
AsuC2I	CCSGG	4 cut(s)	15, 268, 269, 379
AsuHPI	GGTGA	6 cut(s)	1287, 1618, 2036, 2245, 2276, 2542
AsuII	TTCGAA	1 cut(s)	189
AsuNHI	GCTAGC	2 cut(s)	932, 2422
AvaI	CYCGRG	2 cut(s)	267, 383
AvaII	GGWCC	3 cut(s)	405, 661, 1532
BaeGI	GKGCMC	2 cut(s)	294, 1917
BalI	TGGCCA	1 cut(s)	311
BanII	GRGCYC	4 cut(s)	294, 384, 2023, 2061
BbsI	GAAGAC	3 cut(s)	294, 396, 1440
Bbv12I	GWGCWC	3 cut(s)	1621, 2023, 2061
BbvI	GCAGC	5 cut(s)	19, 2098, 2128, 2156, 2405
BccI	CCATC	8 cut(s)	251, 739, 767, 865, 1242, 1636, 1793, 1873
BceAI	ACGGC	3 cut(s)	957, 1128, 2022
BciT130I	CCWGG	3 cut(s)	1025, 1705, 2214
BclI	TGATCA	1 cut(s)	1119
BcnI	CCSGG	4 cut(s)	15, 268, 269, 379
BcoDI	GTCTC	6 cut(s)	43, 174, 1002, 1672, 1686, 2493
BfaI	CTAG	4 cut(s)	759, 933, 1509, 2423
BfmI	CTRYAG	4 cut(s)	33, 1302, 1998, 2142
BfuAI	ACCTGC	2 cut(s)	649, 872
BglII	AGATCT	1 cut(s)	2459
BisI	GCNGC	7 cut(s)	33, 261, 2073, 2112, 2142, 2145, 2394
BlsI	GCNGC	7 cut(s)	34, 262, 2074, 2113, 2143, 2146, 2395
Bme1390I	CCNGG	7 cut(s)	15, 268, 269, 379, 1025, 1705, 2214
Bme18I	GGWCC	3 cut(s)	405, 661, 1532
BmeT110I	CYCGRG	2 cut(s)	267, 383
BmgT120I	GGNCC	7 cut(s)	270, 290, 291, 405, 661, 1231, 1532
BmiI	GGNNCC	3 cut(s)	26, 292, 406
BmrFI	CCNGG	7 cut(s)	15, 268, 269, 379, 1025, 1705, 2214
BmsI	GCATC	6 cut(s)	141, 558, 1048, 1071, 1764, 1993
BmtI	GCTAGC	2 cut(s)	936, 2426
BpiI	GAAGAC	3 cut(s)	294, 396, 1440
BpmI	CTGGAG	1 cut(s)	1448
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	4 cut(s)	15, 268, 269, 379
BsaAI	YACGTR	1 cut(s)	1212
BsaHI	GRCGYC	2 cut(s)	240, 393
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	5 cut(s)	267, 306, 312, 664, 2213
BsaWI	WCCGGW	2 cut(s)	901, 1337
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bse118I	RCCGGY	2 cut(s)	272, 901
Bse1I	ACTGG	3 cut(s)	364, 1465, 2159
Bse3DI	GCAATG	6 cut(s)	229, 358, 838, 967, 1413, 2427
BseBI	CCWGG	3 cut(s)	1025, 1705, 2214
BseDI	CCNNGG	5 cut(s)	267, 306, 312, 664, 2213
BseGI	GGATG	4 cut(s)	750, 796, 1234, 2275
BseMI	GCAATG	6 cut(s)	229, 358, 838, 967, 1413, 2427
BseMII	CTCAG	2 cut(s)	11, 1600
BseNI	ACTGG	3 cut(s)	364, 1465, 2159
BseRI	GAGGAG	5 cut(s)	37, 52, 472, 1784, 2191
BseSI	GKGCMC	2 cut(s)	294, 1917
BseXI	GCAGC	5 cut(s)	19, 2098, 2128, 2156, 2405
BsgI	GTGCAG	1 cut(s)	1063
Bsh1236I	CGCG	2 cut(s)	1439, 2072
BshFI	GGCC	8 cut(s)	260, 272, 292, 311, 317, 629, 1115, 1232
BshTI	ACCGGT	1 cut(s)	901
BsiHKAI	GWGCWC	3 cut(s)	1621, 2023, 2061
BsiHKCI	CYCGRG	2 cut(s)	267, 383
BsiSI	CCGG	7 cut(s)	15, 268, 273, 378, 902, 1338, 1950
BsmAI	GTCTC	6 cut(s)	43, 174, 1002, 1672, 1686, 2493
BsnI	GGCC	8 cut(s)	260, 272, 292, 311, 317, 629, 1115, 1232
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	2 cut(s)	267, 383
Bsp119I	TTCGAA	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	290
Bsp1286I	GDGCHC	6 cut(s)	294, 384, 1621, 1917, 2023, 2061
Bsp1407I	TGTACA	1 cut(s)	1938
Bsp143I	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	8 cut(s)	6, 199, 229, 261, 321, 1439, 2047, 2072
BspANI	GGCC	8 cut(s)	260, 272, 292, 311, 317, 629, 1115, 1232
BspCNI	CTCAG	2 cut(s)	12, 1599
BspFNI	CGCG	2 cut(s)	1439, 2072
BspLI	GGNNCC	3 cut(s)	26, 292, 406
BspMAI	CTGCAG	3 cut(s)	37, 2002, 2146
BspMI	ACCTGC	2 cut(s)	649, 872
BspOI	GCTAGC	2 cut(s)	936, 2426
BspPI	GGATC	1 cut(s)	1895
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	6 cut(s)	229, 358, 838, 967, 1413, 2427
BsrFI	RCCGGY	2 cut(s)	272, 901
BsrGI	TGTACA	1 cut(s)	1938
BsrI	ACTGG	3 cut(s)	364, 1465, 2159
BssAI	RCCGGY	2 cut(s)	272, 901
BssECI	CCNNGG	5 cut(s)	267, 306, 312, 664, 2213
BssMI	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
BssNI	GRCGYC	2 cut(s)	240, 393
BssT1I	CCWWGG	2 cut(s)	312, 664
Bst2UI	CCWGG	3 cut(s)	1025, 1705, 2214
Bst4CI	ACNGT	6 cut(s)	916, 1037, 1546, 2414, 2504, 2512
Bst6I	CTCTTC	5 cut(s)	212, 257, 425, 977, 2373
BstACI	GRCGYC	2 cut(s)	240, 393
BstAPI	GCANNNNNTGC	2 cut(s)	1403, 1412
BstAUI	TGTACA	1 cut(s)	1938
BstBAI	YACGTR	1 cut(s)	1212
BstBI	TTCGAA	1 cut(s)	189
BstDEI	CTNAG	7 cut(s)	20, 1586, 1610, 1696, 1846, 2053, 2486
BstDSI	CCRYGG	2 cut(s)	306, 664
BstENI	CCTNNNNNAGG	1 cut(s)	1302
BstF5I	GGATG	4 cut(s)	750, 796, 1234, 2275
BstFNI	CGCG	2 cut(s)	1439, 2072
BstHHI	GCGC	1 cut(s)	1529
BstKTI	GATC	7 cut(s)	699, 1122, 1581, 1719, 1903, 1936, 2462
BstMAI	GTCTC	6 cut(s)	43, 174, 1002, 1672, 1686, 2493
BstMBI	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
BstMWI	GCNNNNNNNGC	7 cut(s)	228, 269, 608, 1403, 1412, 1421, 1445
BstNI	CCWGG	3 cut(s)	1025, 1705, 2214
BstNSI	RCATGY	2 cut(s)	424, 1990
BstSCI	CCNGG	7 cut(s)	13, 266, 267, 377, 1023, 1703, 2212
BstSFI	CTRYAG	4 cut(s)	33, 1302, 1998, 2142
BstSLI	GKGCMC	2 cut(s)	294, 1917
BstSNI	TACGTA	1 cut(s)	1212
BstUI	CGCG	2 cut(s)	1439, 2072
BstV1I	GCAGC	5 cut(s)	19, 2098, 2128, 2156, 2405
BstV2I	GAAGAC	3 cut(s)	294, 396, 1440
BstX2I	RGATCY	1 cut(s)	2459
BstYI	RGATCY	1 cut(s)	2459
BsuRI	GGCC	8 cut(s)	260, 272, 292, 311, 317, 629, 1115, 1232
BtgI	CCRYGG	2 cut(s)	306, 664
BtgZI	GCGATG	1 cut(s)	1982
BtsCI	GGATG	4 cut(s)	750, 796, 1234, 2275
BtsIMutI	CAGTG	6 cut(s)	371, 403, 1129, 1551, 2419, 2508
BveI	ACCTGC	2 cut(s)	649, 872
CfoI	GCGC	1 cut(s)	1529
Cfr10I	RCCGGY	2 cut(s)	272, 901
Cfr13I	GGNCC	7 cut(s)	270, 290, 291, 405, 661, 1231, 1532
Cfr9I	CCCGGG	1 cut(s)	267
CseI	GACGC	3 cut(s)	248, 1331, 1445
Csp6I	GTAC	7 cut(s)	1129, 1259, 1633, 1833, 1939, 1995, 2363
CspAI	ACCGGT	1 cut(s)	901
CviQI	GTAC	7 cut(s)	1129, 1259, 1633, 1833, 1939, 1995, 2363
DdeI	CTNAG	7 cut(s)	20, 1586, 1610, 1696, 1846, 2053, 2486
DpnI	GATC	7 cut(s)	698, 1121, 1580, 1718, 1902, 1935, 2461
DpnII	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
EaeI	YGGCCR	4 cut(s)	258, 309, 627, 1113
Eam1104I	CTCTTC	5 cut(s)	212, 257, 425, 977, 2373
EarI	CTCTTC	5 cut(s)	212, 257, 425, 977, 2373
Ecl136II	GAGCTC	2 cut(s)	2021, 2059
Eco105I	TACGTA	1 cut(s)	1212
Eco130I	CCWWGG	2 cut(s)	312, 664
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	4 cut(s)	294, 384, 2023, 2061
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	3 cut(s)	405, 661, 1532
Eco53kI	GAGCTC	2 cut(s)	2021, 2059
Eco57I	CTGAAG	2 cut(s)	1371, 2078
Eco88I	CYCGRG	2 cut(s)	267, 383
EcoICRI	GAGCTC	2 cut(s)	2021, 2059
EcoNI	CCTNNNNNAGG	1 cut(s)	1302
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRII	CCWGG	3 cut(s)	1023, 1703, 2212
EcoT14I	CCWWGG	2 cut(s)	312, 664
EcoT38I	GRGCYC	4 cut(s)	294, 384, 2023, 2061
ErhI	CCWWGG	2 cut(s)	312, 664
FauI	CCCGC	2 cut(s)	206, 314
FbaI	TGATCA	1 cut(s)	1119
Fnu4HI	GCNGC	7 cut(s)	33, 261, 2073, 2112, 2142, 2145, 2394
FokI	GGATG	4 cut(s)	757, 803, 1221, 2262
FriOI	GRGCYC	4 cut(s)	294, 384, 2023, 2061
Fsp4HI	GCNGC	7 cut(s)	33, 261, 2073, 2112, 2142, 2145, 2394
FspBI	CTAG	4 cut(s)	759, 933, 1509, 2423
GlaI	GCGC	1 cut(s)	1528
GluI	GCNGC	7 cut(s)	33, 261, 2073, 2112, 2142, 2145, 2394
GsuI	CTGGAG	1 cut(s)	1448
HaeIII	GGCC	8 cut(s)	260, 272, 292, 311, 317, 629, 1115, 1232
HapII	CCGG	7 cut(s)	15, 268, 273, 378, 902, 1338, 1950
HgaI	GACGC	3 cut(s)	248, 1331, 1445
HhaI	GCGC	1 cut(s)	1529
Hin1I	GRCGYC	2 cut(s)	240, 393
Hin6I	GCGC	1 cut(s)	1527
HinP1I	GCGC	1 cut(s)	1527
HincII	GTYRAC	1 cut(s)	1470
HindII	GTYRAC	1 cut(s)	1470
HindIII	AAGCTT	2 cut(s)	849, 1955
HinfI	GANTC	6 cut(s)	592, 995, 1158, 1972, 2105, 2561
HpaII	CCGG	7 cut(s)	15, 268, 273, 378, 902, 1338, 1950
HphI	GGTGA	6 cut(s)	1287, 1618, 2036, 2245, 2276, 2542
Hpy166II	GTNNAC	7 cut(s)	278, 418, 561, 894, 1470, 1500, 2044
Hpy188I	TCNGA	6 cut(s)	21, 870, 1487, 2063, 2287, 2558
Hpy188III	TCNNGA	7 cut(s)	1349, 1675, 1722, 1757, 1886, 2470, 2584
Hpy8I	GTNNAC	7 cut(s)	278, 418, 561, 894, 1470, 1500, 2044
HpyAV	CCTTC	8 cut(s)	196, 643, 1181, 1308, 1378, 1545, 1850, 2323
HpyCH4III	ACNGT	6 cut(s)	916, 1037, 1546, 2414, 2504, 2512
HpyCH4IV	ACGT	3 cut(s)	393, 701, 1211
HpyF10VI	GCNNNNNNNGC	7 cut(s)	228, 269, 608, 1403, 1412, 1421, 1445
HpyF3I	CTNAG	7 cut(s)	20, 1586, 1610, 1696, 1846, 2053, 2486
HpySE526I	ACGT	3 cut(s)	393, 701, 1211
Hsp92I	GRCGYC	2 cut(s)	240, 393
HspAI	GCGC	1 cut(s)	1527
Ksp22I	TGATCA	1 cut(s)	1119
Kzo9I	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	8 cut(s)	24, 104, 324, 553, 582, 655, 1445, 1549
Lsp1109I	GCAGC	5 cut(s)	19, 2098, 2128, 2156, 2405
LweI	GCATC	6 cut(s)	141, 558, 1048, 1071, 1764, 1993
MaeI	CTAG	4 cut(s)	759, 933, 1509, 2423
MaeII	ACGT	3 cut(s)	393, 701, 1211
MaeIII	GTNAC	7 cut(s)	332, 796, 910, 1102, 1293, 1624, 2504
MalI	GATC	7 cut(s)	698, 1121, 1580, 1718, 1902, 1935, 2461
MboI	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
MfeI	CAATTG	1 cut(s)	1374
MflI	RGATCY	1 cut(s)	2459
MhlI	GDGCHC	6 cut(s)	294, 384, 1621, 1917, 2023, 2061
MlsI	TGGCCA	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	3 cut(s)	1004, 1167, 2099
MmeI	TCCRAC	5 cut(s)	531, 825, 972, 1928, 2154
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MslI	CAYNNNNRTG	5 cut(s)	425, 674, 704, 972, 1226
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	2147
MspI	CCGG	7 cut(s)	15, 268, 273, 378, 902, 1338, 1950
MspR9I	CCNGG	7 cut(s)	15, 268, 269, 379, 1025, 1705, 2214
MunI	CAATTG	1 cut(s)	1374
MvaI	CCWGG	3 cut(s)	1025, 1705, 2214
MvnI	CGCG	2 cut(s)	1439, 2072
MwoI	GCNNNNNNNGC	7 cut(s)	228, 269, 608, 1403, 1412, 1421, 1445
NciI	CCSGG	4 cut(s)	15, 268, 269, 379
NcoI	CCATGG	1 cut(s)	664
NdeII	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
NheI	GCTAGC	2 cut(s)	932, 2422
NlaIV	GGNNCC	3 cut(s)	26, 292, 406
NmeAIII	GCCGAG	1 cut(s)	1970
NmuCI	GTSAC	4 cut(s)	332, 1293, 1624, 2504
NspI	RCATGY	2 cut(s)	424, 1990
NspV	TTCGAA	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	704
PaeI	GCATGC	1 cut(s)	1990
PaqCI	CACCTGC	1 cut(s)	872
PceI	AGGCCT	1 cut(s)	317
PciI	ACATGT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 521
PfeI	GAWTC	3 cut(s)	592, 1972, 2561
PflMI	CCANNNNNTGG	2 cut(s)	343, 670
PfoI	TCCNGGA	1 cut(s)	1703
PinAI	ACCGGT	1 cut(s)	901
PkrI	GCNGC	7 cut(s)	34, 262, 2074, 2113, 2143, 2146, 2395
PleI	GAGTC	3 cut(s)	1003, 1166, 2099
PpsI	GAGTC	3 cut(s)	1003, 1166, 2099
Ppu21I	YACGTR	1 cut(s)	1212
PpuMI	RGGWCCY	1 cut(s)	405
PscI	ACATGT	1 cut(s)	420
PshBI	ATTAAT	2 cut(s)	1518, 2522
PsiI	TTATAA	1 cut(s)	1979
Psp124BI	GAGCTC	2 cut(s)	2023, 2061
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	1023, 1703, 2212
PspGI	CCWGG	3 cut(s)	1023, 1703, 2212
PspN4I	GGNNCC	3 cut(s)	26, 292, 406
PspOMI	GGGCCC	1 cut(s)	290
PspPI	GGNCC	7 cut(s)	270, 290, 291, 405, 661, 1231, 1532
PspPPI	RGGWCCY	1 cut(s)	405
PsrI	GAACNNNNNNTAC	2 cut(s)	2231, 2263
PstI	CTGCAG	3 cut(s)	37, 2002, 2146
PsuI	RGATCY	1 cut(s)	2459
PvuII	CAGCTG	1 cut(s)	2147
RsaI	GTAC	7 cut(s)	1130, 1260, 1634, 1834, 1940, 1996, 2364
RsaNI	GTAC	7 cut(s)	1129, 1259, 1633, 1833, 1939, 1995, 2363
RseI	CAYNNNNRTG	5 cut(s)	425, 674, 704, 972, 1226
SacI	GAGCTC	2 cut(s)	2023, 2061
SapI	GCTCTTC	1 cut(s)	212
SatI	GCNGC	7 cut(s)	33, 261, 2073, 2112, 2142, 2145, 2394
Sau3AI	GATC	7 cut(s)	696, 1119, 1578, 1716, 1900, 1933, 2459
Sau96I	GGNCC	7 cut(s)	270, 290, 291, 405, 661, 1231, 1532
SchI	GAGTC	3 cut(s)	1004, 1167, 2099
ScrFI	CCNGG	7 cut(s)	15, 268, 269, 379, 1025, 1705, 2214
SduI	GDGCHC	6 cut(s)	294, 384, 1621, 1917, 2023, 2061
SfaNI	GCATC	6 cut(s)	141, 558, 1048, 1071, 1764, 1993
SfcI	CTRYAG	4 cut(s)	33, 1302, 1998, 2142
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	3 cut(s)	405, 661, 1532
SmaI	CCCGGG	1 cut(s)	269
SmiMI	CAYNNNNRTG	5 cut(s)	425, 674, 704, 972, 1226
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
SnaBI	TACGTA	1 cut(s)	1212
SphI	GCATGC	1 cut(s)	1990
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	8 cut(s)	6, 199, 229, 261, 321, 1439, 2047, 2072
SspI	AATATT	2 cut(s)	1009, 1651
SspMI	CTAG	4 cut(s)	759, 933, 1509, 2423
SstI	GAGCTC	2 cut(s)	2023, 2061
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	7 cut(s)	13, 266, 267, 377, 1023, 1703, 2212
StyI	CCWWGG	2 cut(s)	312, 664
TaaI	ACNGT	6 cut(s)	916, 1037, 1546, 2414, 2504, 2512
TaiI	ACGT	3 cut(s)	396, 704, 1214
TaqI	TCGA	3 cut(s)	162, 189, 1577
TatI	WGTACW	5 cut(s)	1258, 1832, 1938, 1994, 2362
TauI	GCSGC	2 cut(s)	263, 2075
TfiI	GAWTC	3 cut(s)	592, 1972, 2561
TscAI	CASTG	6 cut(s)	371, 403, 1129, 1551, 2419, 2515
TseFI	GTSAC	4 cut(s)	332, 1293, 1624, 2504
TseI	GCWGC	5 cut(s)	32, 2111, 2141, 2144, 2393
Tsp45I	GTSAC	4 cut(s)	332, 1293, 1624, 2504
TspDTI	ATGAA	9 cut(s)	443, 954, 1556, 1680, 1801, 1869, 1985, 2201, 2205
TspGWI	ACGGA	3 cut(s)	295, 578, 585
TspMI	CCCGGG	1 cut(s)	267
TspRI	CASTG	6 cut(s)	371, 403, 1129, 1551, 2419, 2515
Van91I	CCANNNNNTGG	2 cut(s)	343, 670
VpaK11BI	GGWCC	3 cut(s)	405, 661, 1532
VspI	ATTAAT	2 cut(s)	1518, 2522
XagI	CCTNNNNNAGG	1 cut(s)	1302
XapI	RAATTY	2 cut(s)	1455, 1786
XceI	RCATGY	2 cut(s)	424, 1990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2585
XmaI	CCCGGG	1 cut(s)	267
XspI	CTAG	4 cut(s)	759, 933, 1509, 2423
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.