Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015364

Physical Location & Seq

Genomic Coordinates Reverse (-)

53876212 .. 53879163

Gene Structure 2952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00036910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGACCGCAAAGCCCGGTTTGAGGAGCCTTGCAATCTCTTACACAAAGCGAGCTCTCACTCAAACCGACCTTTCCTCTCATACCAAACGTCTCTCTCACTCTCACCCCATTCCCTTCACTCCCAAACCCAGCAACACTATAAATGCGCACCACCTGTTCGATACAACTCCCCACAGAGACCCCTTAGAATACACCCACTTACTCTTCGAGTACACTCGCAGTGACCGCAACCATGAAGCCATCAACCTCTTTCTGGGTGCTTCCCGGGCTGGTCTACCGGTCAATGGGTCGGTTCTGTCTTCTGTGGTCAAGGCTTGTGGAAGCTTGTGTGATCAAGTTGTGGGTAGACAAGTGCACTGTCAGTGTGTCAAGTCCGGGCTTGGGGAAGATGTTAGTGTTGGGACCTCTCTTGTCGATATGTATATGAAAACCGAGGGTGTTGTGGAGGGGAGGAGAGTCTTTGATGAGATGAGGGAGACGAATGTAGTGTCATGGACTTCATTAATTTCAGGTTACGCAAGAAACGGATTGAATGACCAGGCGTTGGAGTTGTTTTCGCAGATGCAAATGGAAGGAAATAAGCCGAACCCGTTTACGTATGTGGCTGTGCTTGGAGTTTTGGCAGATGACGGGTTGGTTGAGAAGGGAAAGCAGGTTCATGCCATGGTTGTAAAGAACGGTTATGTAGCGATTACATTCTTGTGCAATTCATTGATTAACATGTATCTAAAGTCAGGGATGGTTAGTGAGGCTAGAGCTGTTTTTGATAGTATGGCAAGTAGAGATGAGGTTACGTGGAATAGCTTGGTTGCAGGTTATGTTACGAATGGGCTTGAGTTGGAAGCTTTTGAAATGTTTAATCAGATGGGGCTTGCGGGTATTAAGTTCACACAACCGATATTTGTTACTGTTATCAAGTTATGTGCTAACTATGAAGAATTGGGTTTTGCAAGACAGCTACATTGCCGTGTTTTGAAGAGTGGTTTGGCATCCCATCGCAATATTGAAACAGCACTCCTGGTGGCTTACAGTAAGTGCAGTGAAATGGACGATGCTTATAATATGTTCTCCATGATGCAAGGTGTTCAAAGTGTAGTAACTTGGACGGCCATGATCAGTGGGTACCTGCAGAATCGTGGAACAGAGAAAGGAGTGAAGTTATTCTGTAAAATGAGCAGAGAAGGTGTTAGACCAAATGATTTCACTTATTCTGCCATCATTATGGCCCACCCTTCTATATCTATATTCCAAGTACATGCACAAGTTATAAAAACTAATTATGAGAAGTCACCTTCTGTAGGAACTTCACTCATAGACGCTTATGTTAAGATGGGAAATGTTCCTGAAGCTGAAAAAGTTTTCCAAACGATTGACGAGAAGGACGTTGTAGCATGGTCAGCAATGCTTGCTGGATATTCTCAAATAGAAGACACCGTGGGAGCTATTAAAATTTTCCTCCAGTTGACAAGAAAAGGAGTCAAACCTAACGAGTTTACTTTGTCTAGTATCATTAATGCTTGCGCTGGACCTTCAGCAACAGTGGAGCAGGGGAAACAATTTCATGCTTGCTCAATTAAACTCAGGTTGAACAATACTTTGTGTCTAAGTAGTGCTCTTGTTACCATGTATGCAAAGATGGGGAATATTGAAAGTGCAAATGAAGTTTTCAAGAGACAAGGTGAGAGAGACTTAGTTTCGTGGAACTCTATGATCTCTGGATATGCACAACATGGTCAGGGGAATAAGGTTCTTGAAGTATTTGAGGAGATGCGTAGACAAAATTTGGAAATTGATGGGATAACATTCATTCTCATAATCTCTGCCTGTACTCATGCAGGCTTAGTAGATGAAGGTAAAAGATTTTTCAATATTATGGTCCAAGATTACAATATTGATCCTACAACGGAGCACTATTCTTGTATGGTTGATCTGTACAGCAGAGCCGGAAAGCTTGAAAAAGCGTTGAATCTTATAAACAGCATGCCCTTCACTGCAGATGCAAATGTGTGGCGAGCTCTCTTGGGTGCTTGCCGTGTTCACCGCAACTTAGAGCTGGGAAAACTCGCAGCAGAAAAGCTCATTTCATTTCAGCCCCAAGACTCCGCTGCTTATGTTCTGTTGTCAAATATTTATGCTGCAGCTGGAAACTGGCAAGAGAGAGATAAAGTGAGGAAGTTGATGGATGAAAGAAAAGTTAAAAAGCAACCTGGGTATAGCTGGATTGAGGTGAAGAACAAGACCTATACATTCTTGGCCGGTGATGTTTCACATCCCATGTCAGACCGTATATACTCAAAACTTGATGAGTTGAATAACCGATTGAAGGATATGGGTTATCAGCCTGATACAAACTACGTGCTCCATGATGTTGAAGAGGAACACAAAGCAGCCTTTCTTTATCAACACAGTGAGAGGCTGGCCATTGCTTTTGGATTGATTGCCAAACCTCCAGGATCTCCTATCCAGATTTTGAAAAATCTTAGGGTATGTGGAGACTGTCACACTGTTATTAAATTAATTTCGGTGATAGAAGCGAGGGATATAGTTGTCAGAGATTCAAATCGATACCACCACTTCAAGGGTGGTATATGCTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

870

Amino Acids

97.03

Weight (kDa)

7.78

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	159 - 207	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	161 - 208	4.7e-12	PPR repeat family
PPR_1	PF12854	161 - 189	2.5e-07	PPR repeat
PPR	PF01535	163 - 192	3.7e-08	PPR repeat
PPR_2	PF13041	364 - 407	8.3e-13	PPR repeat family
PPR	PF01535	366 - 396	1.8e-06	PPR repeat
PPR_2	PF13041	460 - 508	1e-09	PPR repeat family
PPR_2	PF13041	563 - 610	2.2e-11	PPR repeat family
PPR	PF01535	565 - 594	2e-09	PPR repeat
E_motif	PF20431	680 - 742	1.1e-19	E motif
Eplus_motif	PF20430	747 - 774	6.4e-09	E+ motif
DYW_deaminase	PF14432	778 - 870	2.1e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27610
fragaria_vesca	FvH4_3g24581
prunus_persica	Prupe.6G127000_v2.0.a1
pyrus_communis	pycom11g13360
rosa_chinensis	RchiOBHm_Chr5g0044141
rosa_laevigata	RLG00000034246
rosa_multiflora	Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036910
rosa_rugosa	Rorug05G0210800
rosa_samantha	Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana	Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1059, 1268, 1973
Acc16I	TGCGCA	1 cut(s)	147
Acc36I	ACCTGC	3 cut(s)	643, 803, 1134
Acc65I	GGTACC	1 cut(s)	1122
AccB1I	GGYRCC	1 cut(s)	1122
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccI	GTMKAC	3 cut(s)	274, 346, 1774
AciI	CCGC	5 cut(s)	6, 226, 875, 2041, 2103
AclWI	GGATC	2 cut(s)	1889, 2461
AcoI	YGGCCR	3 cut(s)	1107, 2253, 2418
AcsI	RAATTY	2 cut(s)	1449, 1780
AcuI	CTGAAG	2 cut(s)	1365, 1515
AfaI	GTAC	5 cut(s)	212, 1124, 1254, 1828, 1934
AfiI	CCNNNNNNNGG	8 cut(s)	21, 253, 284, 381, 544, 1298, 2323, 2578
AflIII	ACRYGT	1 cut(s)	720
AgeI	ACCGGT	1 cut(s)	277
AjnI	CCWGG	4 cut(s)	537, 1017, 2206, 2449
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
Alw21I	GWGCWC	6 cut(s)	55, 357, 1615, 1911, 2017, 2361
Alw26I	GTCTC	6 cut(s)	95, 171, 470, 1666, 1680, 2487
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	1889, 2461
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	4 cut(s)	1107, 1224, 2253, 2418
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	5 cut(s)	2066, 2105, 2135, 2138, 2387
ApoI	RAATTY	2 cut(s)	1449, 1780
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AseI	ATTAAT	3 cut(s)	503, 1512, 2516
AsiGI	ACCGGT	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	1160
Asp718I	GGTACC	1 cut(s)	1122
AspLEI	GCGC	2 cut(s)	148, 1523
AspS9I	GGNCC	4 cut(s)	402, 1225, 1526, 1876
AsuC2I	CCSGG	4 cut(s)	15, 265, 266, 376
AsuHPI	GGTGA	7 cut(s)	95, 1281, 1691, 2030, 2239, 2270, 2536
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	3 cut(s)	402, 1526, 1876
BaeGI	GKGCMC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	2420
BanI	GGYRCC	1 cut(s)	1122
BanII	GRGCYC	2 cut(s)	55, 2017
BbsI	GAAGAC	2 cut(s)	291, 1434
Bbv12I	GWGCWC	6 cut(s)	55, 357, 1615, 1911, 2017, 2361
BbvI	GCAGC	5 cut(s)	2078, 2092, 2122, 2150, 2399
BccI	CCATC	9 cut(s)	248, 733, 859, 1002, 1223, 1324, 1630, 1787, 2173
BceAI	ACGGC	3 cut(s)	951, 1122, 2016
BciT130I	CCWGG	4 cut(s)	539, 1019, 2208, 2451
BclI	TGATCA	2 cut(s)	331, 1113
BcnI	CCSGG	4 cut(s)	15, 265, 266, 376
BcoDI	GTCTC	6 cut(s)	95, 171, 470, 1666, 1680, 2487
BfaI	CTAG	2 cut(s)	753, 1503
BfmI	CTRYAG	4 cut(s)	1127, 1296, 1992, 2136
BfuAI	ACCTGC	3 cut(s)	643, 803, 1134
BisI	GCNGC	5 cut(s)	2067, 2106, 2136, 2139, 2388
BlsI	GCNGC	5 cut(s)	2068, 2107, 2137, 2140, 2389
Bme1390I	CCNGG	8 cut(s)	15, 265, 266, 376, 539, 1019, 2208, 2451
Bme18I	GGWCC	3 cut(s)	402, 1526, 1876
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	4 cut(s)	402, 1225, 1526, 1876
BmiI	GGNNCC	3 cut(s)	26, 403, 1124
BmrFI	CCNGG	8 cut(s)	15, 265, 266, 376, 539, 1019, 2208, 2451
BmsI	GCATC	6 cut(s)	552, 998, 1042, 1065, 1758, 1987
BpiI	GAAGAC	2 cut(s)	291, 1434
BpmI	CTGGAG	2 cut(s)	1442, 2433
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	4 cut(s)	15, 265, 266, 376
Bsa29I	ATCGAT	1 cut(s)	2563
BsaAI	YACGTR	3 cut(s)	597, 795, 2356
BsaBI	GATNNNNATC	1 cut(s)	2559
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	5 cut(s)	264, 432, 663, 1434, 2207
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	8 cut(s)	21, 253, 284, 381, 544, 1298, 2323, 2578
Bse118I	RCCGGY	2 cut(s)	277, 2255
Bse1I	ACTGG	2 cut(s)	1459, 2153
Bse3DI	GCAATG	3 cut(s)	961, 1407, 2421
Bse8I	GATNNNNATC	1 cut(s)	2559
BseBI	CCWGG	4 cut(s)	539, 1019, 2208, 2451
BseCI	ATCGAT	1 cut(s)	2563
BseDI	CCNNGG	5 cut(s)	264, 432, 663, 1434, 2207
BseGI	GGATG	4 cut(s)	744, 989, 2188, 2269
BseJI	GATNNNNATC	1 cut(s)	2559
BseLI	CCNNNNNNNGG	8 cut(s)	21, 253, 284, 381, 544, 1298, 2323, 2578
BseMI	GCAATG	3 cut(s)	961, 1407, 2421
BseMII	CTCAG	1 cut(s)	1594
BseNI	ACTGG	2 cut(s)	1459, 2153
BseRI	GAGGAG	3 cut(s)	37, 466, 1778
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	5 cut(s)	2078, 2092, 2122, 2150, 2399
BseYI	CCCAGC	2 cut(s)	128, 2053
BsgI	GTGCAG	1 cut(s)	1057
BshFI	GGCC	4 cut(s)	1109, 1226, 2255, 2420
BshNI	GGYRCC	1 cut(s)	1122
BshTI	ACCGGT	1 cut(s)	277
BshVI	ATCGAT	1 cut(s)	2563
BsiHKAI	GWGCWC	6 cut(s)	55, 357, 1615, 1911, 2017, 2361
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	6 cut(s)	15, 265, 278, 375, 1944, 2256
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	8 cut(s)	21, 253, 284, 381, 544, 1298, 2323, 2578
BsmAI	GTCTC	6 cut(s)	95, 171, 470, 1666, 1680, 2487
BsmBI	CGTCTC	2 cut(s)	95, 470
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	1109, 1226, 2255, 2420
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	264
Bsp1286I	GDGCHC	6 cut(s)	55, 357, 1615, 1911, 2017, 2361
Bsp1407I	TGTACA	1 cut(s)	1932
Bsp143I	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	5 cut(s)	6, 226, 875, 2041, 2103
BspANI	GGCC	4 cut(s)	1109, 1226, 2255, 2420
BspCNI	CTCAG	1 cut(s)	1593
BspDI	ATCGAT	1 cut(s)	2563
BspLI	GGNNCC	3 cut(s)	26, 403, 1124
BspMAI	CTGCAG	3 cut(s)	1131, 1996, 2140
BspMI	ACCTGC	3 cut(s)	643, 803, 1134
BspPI	GGATC	2 cut(s)	1889, 2461
BspT107I	GGYRCC	1 cut(s)	1122
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	3 cut(s)	961, 1407, 2421
BsrFI	RCCGGY	2 cut(s)	277, 2255
BsrGI	TGTACA	1 cut(s)	1932
BsrI	ACTGG	2 cut(s)	1459, 2153
BssAI	RCCGGY	2 cut(s)	277, 2255
BssECI	CCNNGG	5 cut(s)	264, 432, 663, 1434, 2207
BssMI	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	4 cut(s)	539, 1019, 2208, 2451
Bst6I	CTCTTC	3 cut(s)	209, 971, 2367
BstAPI	GCANNNNNTGC	1 cut(s)	1406
BstAUI	TGTACA	1 cut(s)	1932
BstBAI	YACGTR	3 cut(s)	597, 795, 2356
BstDEI	CTNAG	7 cut(s)	184, 1580, 1604, 1690, 1840, 2047, 2480
BstDSI	CCRYGG	2 cut(s)	663, 1434
BstENI	CCTNNNNNAGG	1 cut(s)	1296
BstF5I	GGATG	4 cut(s)	744, 989, 2188, 2269
BstHHI	GCGC	2 cut(s)	148, 1523
BstKTI	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2456
BstMAI	GTCTC	6 cut(s)	95, 171, 470, 1666, 1680, 2487
BstMBI	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 266, 1397, 1406
BstNI	CCWGG	4 cut(s)	539, 1019, 2208, 2451
BstNSI	RCATGY	3 cut(s)	724, 1259, 1984
BstSCI	CCNGG	8 cut(s)	13, 263, 264, 374, 537, 1017, 2206, 2449
BstSFI	CTRYAG	4 cut(s)	1127, 1296, 1992, 2136
BstSLI	GKGCMC	1 cut(s)	357
BstSNI	TACGTA	1 cut(s)	597
BstV1I	GCAGC	5 cut(s)	2078, 2092, 2122, 2150, 2399
BstV2I	GAAGAC	2 cut(s)	291, 1434
BstX2I	RGATCY	1 cut(s)	2453
BstXI	CCANNNNNNTGG	1 cut(s)	1222
BstYI	RGATCY	1 cut(s)	2453
Bsu15I	ATCGAT	1 cut(s)	2563
BsuRI	GGCC	4 cut(s)	1109, 1226, 2255, 2420
BsuTUI	ATCGAT	1 cut(s)	2563
BtgI	CCRYGG	2 cut(s)	663, 1434
BtgZI	GCGATG	1 cut(s)	980
BtsCI	GGATG	4 cut(s)	744, 989, 2188, 2269
BtsI	GCAGTG	3 cut(s)	226, 1045, 1989
BtsIMutI	CAGTG	9 cut(s)	226, 355, 368, 1045, 1123, 1545, 1989, 2413, 2502
BveI	ACCTGC	3 cut(s)	643, 803, 1134
CfoI	GCGC	2 cut(s)	148, 1523
Cfr10I	RCCGGY	2 cut(s)	277, 2255
Cfr13I	GGNCC	4 cut(s)	402, 1225, 1526, 1876
Cfr9I	CCCGGG	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	2563
CseI	GACGC	1 cut(s)	1325
Csp6I	GTAC	5 cut(s)	211, 1123, 1253, 1827, 1933
CspAI	ACCGGT	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviQI	GTAC	5 cut(s)	211, 1123, 1253, 1827, 1933
DdeI	CTNAG	7 cut(s)	184, 1580, 1604, 1690, 1840, 2047, 2480
DpnI	GATC	6 cut(s)	333, 1115, 1712, 1896, 1929, 2455
DpnII	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
EaeI	YGGCCR	3 cut(s)	1107, 2253, 2418
Eam1104I	CTCTTC	3 cut(s)	209, 971, 2367
EarI	CTCTTC	3 cut(s)	209, 971, 2367
Ecl136II	GAGCTC	2 cut(s)	53, 2015
Eco105I	TACGTA	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	55, 2017
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	3 cut(s)	402, 1526, 1876
Eco53kI	GAGCTC	2 cut(s)	53, 2015
Eco57I	CTGAAG	2 cut(s)	1365, 1515
Eco88I	CYCGRG	1 cut(s)	264
EcoICRI	GAGCTC	2 cut(s)	53, 2015
EcoNI	CCTNNNNNAGG	1 cut(s)	1296
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	4 cut(s)	537, 1017, 2206, 2449
EcoT14I	CCWWGG	1 cut(s)	663
EcoT38I	GRGCYC	2 cut(s)	55, 2017
ErhI	CCWWGG	1 cut(s)	663
Esp3I	CGTCTC	2 cut(s)	95, 470
FaqI	GGGAC	1 cut(s)	415
FauI	CCCGC	1 cut(s)	868
FbaI	TGATCA	2 cut(s)	331, 1113
FblI	GTMKAC	3 cut(s)	274, 346, 1774
Fnu4HI	GCNGC	5 cut(s)	2067, 2106, 2136, 2139, 2388
FokI	GGATG	4 cut(s)	751, 976, 2195, 2256
FriOI	GRGCYC	2 cut(s)	55, 2017
Fsp4HI	GCNGC	5 cut(s)	2067, 2106, 2136, 2139, 2388
FspAI	RTGCGCAY	1 cut(s)	147
FspBI	CTAG	2 cut(s)	753, 1503
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	2 cut(s)	147, 1522
GluI	GCNGC	5 cut(s)	2067, 2106, 2136, 2139, 2388
GsaI	CCCAGC	2 cut(s)	132, 2057
GsuI	CTGGAG	2 cut(s)	1442, 2433
HaeIII	GGCC	4 cut(s)	1109, 1226, 2255, 2420
HapII	CCGG	6 cut(s)	15, 265, 278, 375, 1944, 2256
HgaI	GACGC	1 cut(s)	1325
HhaI	GCGC	2 cut(s)	148, 1523
Hin6I	GCGC	2 cut(s)	146, 1521
HinP1I	GCGC	2 cut(s)	146, 1521
HincII	GTYRAC	1 cut(s)	1464
HindII	GTYRAC	1 cut(s)	1464
HindIII	AAGCTT	3 cut(s)	322, 843, 1949
HinfI	GANTC	6 cut(s)	456, 1132, 1476, 1966, 2099, 2555
HpaII	CCGG	6 cut(s)	15, 265, 278, 375, 1944, 2256
HphI	GGTGA	7 cut(s)	95, 1281, 1691, 2030, 2239, 2270, 2536
Hpy188I	TCNGA	3 cut(s)	864, 2281, 2552
Hpy188III	TCNNGA	5 cut(s)	1343, 1669, 1716, 1751, 2464
HpyCH4IV	ACGT	5 cut(s)	88, 596, 794, 1383, 2355
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 266, 1397, 1406
HpyF3I	CTNAG	7 cut(s)	184, 1580, 1604, 1690, 1840, 2047, 2480
HpySE526I	ACGT	5 cut(s)	88, 596, 794, 1383, 2355
HspAI	GCGC	2 cut(s)	146, 1521
KpnI	GGTACC	1 cut(s)	1126
Ksp22I	TGATCA	2 cut(s)	331, 1113
Kzo9I	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
LmnI	GCTCC	5 cut(s)	24, 1439, 1543, 1906, 2364
Lsp1109I	GCAGC	5 cut(s)	2078, 2092, 2122, 2150, 2399
LweI	GCATC	6 cut(s)	552, 998, 1042, 1065, 1758, 1987
MaeI	CTAG	2 cut(s)	753, 1503
MaeII	ACGT	5 cut(s)	88, 596, 794, 1383, 2355
MaeIII	GTNAC	9 cut(s)	221, 512, 790, 820, 904, 1096, 1287, 1618, 2498
MalI	GATC	6 cut(s)	333, 1115, 1712, 1896, 1929, 2455
MboI	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
MboII	GAAGA	8 cut(s)	196, 291, 398, 947, 988, 1439, 2242, 2384
MflI	RGATCY	1 cut(s)	2453
MhlI	GDGCHC	6 cut(s)	55, 357, 1615, 1911, 2017, 2361
MlsI	TGGCCA	1 cut(s)	2420
MluNI	TGGCCA	1 cut(s)	2420
MlyI	GAGTC	3 cut(s)	465, 1485, 2093
MmeI	TCCRAC	2 cut(s)	525, 819
Mox20I	TGGCCA	1 cut(s)	2420
MroXI	GAANNNNTTC	1 cut(s)	1160
MscI	TGGCCA	1 cut(s)	2420
MslI	CAYNNNNRTG	3 cut(s)	700, 966, 1220
Msp20I	TGGCCA	1 cut(s)	2420
MspA1I	CMGCKG	2 cut(s)	2105, 2141
MspI	CCGG	6 cut(s)	15, 265, 278, 375, 1944, 2256
MspR9I	CCNGG	8 cut(s)	15, 265, 266, 376, 539, 1019, 2208, 2451
MvaI	CCWGG	4 cut(s)	539, 1019, 2208, 2451
MwoI	GCNNNNNNNGC	4 cut(s)	225, 266, 1397, 1406
NciI	CCSGG	4 cut(s)	15, 265, 266, 376
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
NlaIV	GGNNCC	3 cut(s)	26, 403, 1124
NmuCI	GTSAC	3 cut(s)	221, 1287, 2498
NsbI	TGCGCA	1 cut(s)	147
NspI	RCATGY	3 cut(s)	724, 1259, 1984
PaeI	GCATGC	1 cut(s)	1984
PciI	ACATGT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	1380
PdmI	GAANNNNTTC	1 cut(s)	1160
PfeI	GAWTC	3 cut(s)	1132, 1966, 2555
PflMI	CCANNNNNTGG	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	2449
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	2068, 2107, 2137, 2140, 2389
PleI	GAGTC	3 cut(s)	464, 1484, 2093
PpsI	GAGTC	3 cut(s)	464, 1484, 2093
Ppu21I	YACGTR	3 cut(s)	597, 795, 2356
PpuMI	RGGWCCY	1 cut(s)	402
PscI	ACATGT	1 cut(s)	720
PshBI	ATTAAT	3 cut(s)	503, 1512, 2516
PsiI	TTATAA	3 cut(s)	1059, 1268, 1973
Psp124BI	GAGCTC	2 cut(s)	55, 2017
Psp5II	RGGWCCY	1 cut(s)	402
Psp6I	CCWGG	4 cut(s)	537, 1017, 2206, 2449
PspFI	CCCAGC	2 cut(s)	128, 2053
PspGI	CCWGG	4 cut(s)	537, 1017, 2206, 2449
PspN4I	GGNNCC	3 cut(s)	26, 403, 1124
PspPI	GGNCC	4 cut(s)	402, 1225, 1526, 1876
PspPPI	RGGWCCY	1 cut(s)	402
PstI	CTGCAG	3 cut(s)	1131, 1996, 2140
PsuI	RGATCY	1 cut(s)	2453
PvuII	CAGCTG	1 cut(s)	2141
RsaI	GTAC	5 cut(s)	212, 1124, 1254, 1828, 1934
RsaNI	GTAC	5 cut(s)	211, 1123, 1253, 1827, 1933
RseI	CAYNNNNRTG	3 cut(s)	700, 966, 1220
SacI	GAGCTC	2 cut(s)	55, 2017
SatI	GCNGC	5 cut(s)	2067, 2106, 2136, 2139, 2388
Sau3AI	GATC	6 cut(s)	331, 1113, 1710, 1894, 1927, 2453
Sau96I	GGNCC	4 cut(s)	402, 1225, 1526, 1876
SchI	GAGTC	3 cut(s)	465, 1485, 2093
ScrFI	CCNGG	8 cut(s)	15, 265, 266, 376, 539, 1019, 2208, 2451
SduI	GDGCHC	6 cut(s)	55, 357, 1615, 1911, 2017, 2361
SfaNI	GCATC	6 cut(s)	552, 998, 1042, 1065, 1758, 1987
SfcI	CTRYAG	4 cut(s)	1127, 1296, 1992, 2136
SinI	GGWCC	3 cut(s)	402, 1526, 1876
SmaI	CCCGGG	1 cut(s)	266
SmiMI	CAYNNNNRTG	3 cut(s)	700, 966, 1220
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SnaBI	TACGTA	1 cut(s)	597
SphI	GCATGC	1 cut(s)	1984
SsiI	CCGC	5 cut(s)	6, 226, 875, 2041, 2103
SspI	AATATT	5 cut(s)	1003, 1645, 1870, 1891, 2128
SspMI	CTAG	2 cut(s)	753, 1503
SstI	GAGCTC	2 cut(s)	55, 2017
StyD4I	CCNGG	8 cut(s)	13, 263, 264, 374, 537, 1017, 2206, 2449
StyI	CCWWGG	1 cut(s)	663
TaiI	ACGT	5 cut(s)	91, 599, 797, 1386, 2358
TaqI	TCGA	4 cut(s)	159, 207, 414, 2563
TatI	WGTACW	4 cut(s)	210, 1252, 1826, 1932
TfiI	GAWTC	3 cut(s)	1132, 1966, 2555
TscAI	CASTG	9 cut(s)	226, 362, 368, 1045, 1123, 1545, 1996, 2413, 2509
TseFI	GTSAC	3 cut(s)	221, 1287, 2498
TseI	GCWGC	5 cut(s)	2066, 2105, 2135, 2138, 2387
Tsp45I	GTSAC	3 cut(s)	221, 1287, 2498
TspGWI	ACGGA	2 cut(s)	540, 1919
TspMI	CCCGGG	1 cut(s)	264
TspRI	CASTG	9 cut(s)	226, 362, 368, 1045, 1123, 1545, 1996, 2413, 2509
Van91I	CCANNNNNTGG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	402, 1526, 1876
VspI	ATTAAT	3 cut(s)	503, 1512, 2516
XagI	CCTNNNNNAGG	1 cut(s)	1296
XapI	RAATTY	2 cut(s)	1449, 1780
XceI	RCATGY	3 cut(s)	724, 1259, 1984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2579
XmaI	CCCGGG	1 cut(s)	264
XmiI	GTMKAC	3 cut(s)	274, 346, 1774
XmnI	GAANNNNTTC	1 cut(s)	1160
XspI	CTAG	2 cut(s)	753, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.