Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0015364

Physical Location & Seq

Genomic Coordinates Forward (+)

40332796 .. 40337624

Gene Structure 4829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2457 bp

ATGACCGCAAAGCCCGGTTTGAGGATCCTTGCAATCTCTTACACAAAGCGAGCTCTCACTCAAACCCACCTTTCCTCTCATACCAAACGTCTCTCTCACTCTCACCCCATTCCCTTCTCTACCAAACCCAGCAACACTATAAATGCACACCACCTGTTCGATAAAACTCCCCACAGAGACCTCTTAGAATACACCCACTTACTCTTCGAGTACACTCGCAATGACCGCAACCATGAAGCCGTCAACCTCTTTCTGGGTGCTTTCCGGGCCGGTCTACTGGTCAATGGGTCGGTTCTGTCTTCTGTGGTCAAGGCTTGTGGAACCTTGTGTGATCAAGCTGTGGGTAGACAAGTGCATTGTCAGTGTGTCAAGTCCGGGCTTGGGGAAGATGTTAGTGTTGGGACCTCTCTTGTCGATATGTATATGAAAACCGAGGGTGTTTTGGAGGGGAGGAGAGTCTTTGATGAGATGAGGGAGACGAATGTAGTGTCATGGACTTCATTGATTTCGGGTTACGCAAGAAAAGGCTTGAATGACCAGGCGTTGGAGTTGTTTTCGCAGATGCAAATGGAAGGAAATAAGCCGAACCCGTTTACGTATGTGGCTGTGCTTGGAGTTTTGGCAGATGACGGGTTGGTTGAGAAGGGAAAGCAGGTTCATGCCGTGGTTGTAAAGAATGGTTATGTGGCGATTACATTCTTGTGCAATTCGTTGATTAACATGTATCTAAAGTCAGGGATGGTTAGTGAGGCTAGAGCTGTTTTTGATAGTATGGCAAGTAGAGATGAGGTTACATGGAATAGCTTGGTTGCAGGTTATGTTACGAATGGGCTTGAGTTGGAAGCTTTTGAAATGTTTAATCAGATGGGGCTTGCGGGTATTAAGTTCACGCAACCGATATTTGTTACTGTTATCAAGTTATGTGCTAACTATGAAGAATTGGGTTTTGCAAGACAGCTACATTGCCGTGTTTTGAAGAGTGGGTTGGCATCCCATCGCAATATTGAAACAGCAATCCTGGTGGCTTACAGTAAGTGCAGTGAAATGGAAGATGCTTATAATATGTTCTCCATGATGCAAGGTGTTCAAAGTGTAGTAACTTGGACGGCCATGATCAGTGGGTACCTGCAGAATGGTGGAACAGAGAAAGGAGTGAAGTTATTCTGTAAAATGAGCAGAGAAGGTGTTAGACCAAATGAGTTCACTTATTCTGCCATCATTATGGCTCACCCTTCTATATCTATATTCCAAGTACATGCACAAGTTATAAAAACTAATTATGAGAAGTCACCTTCTGTAGGAACTTCACTCATAGACGCTTATGTTAAGATGAGAAATGTTCCTGAAGCTGAAAAAGTTTTCCAAACGATTGACGAGAAGGACATTGTAGCATGGTCAGCAATGCTTGCTGGATATGCTCAAATAGAAGACACCGTGGGAGCTATTAAAATTTTCCTCCAGTTGACAAGAAAAGGGGTCAAACCTAACGAGTTTACTTTGTCTAGTATCATTAATGCTTGCGCTGGACCTTCAGCAACAGTGGAGCAGGGGAAGCAATTTCATGCTTGCTCAATTAAACTCAGGTTGAACAATACTTTGTTATTTGAGGAGATGCGTAGACAAAATTTGGAAATTGATGGGATAACATTCATTCTCATCATCTCTGCCTGTACTCATGCAGGCTTAGTAGATGAAGGTAAAAGATTTTTCAATATTATGGTCCAAGATTACAATATTGATCCTACAATGGAGCACTATTCTTGTATGGTTGATCTGTACAGCCGAGCCGGAAAGCTTGAAAAAGCGATGAATCTTATAAACAGCATGCCCTTCACTGCAGATGCAAATGTGTGGCGAGCTCTCTTGGGTGCTTGCCGTGTTCACCGTAACTTAGAGCTGGGAAAACTCGCAGCAGAGAAGCTCATTTCACTTCAGCCCCAAGACTCCGCTGCTTATGTTCTGTTGTCAAATATTTATGCTGCAGCTGGAAACTGGCAAGAGAGAGACAAAGTGAGGAAATTGATGGATGAAAGAAAAGTGAAAAAGCAACCTGGGTATAGCTGGATTGAGGTGAAGAACAAGACCTATACATTCTTGGCCGGTGATGTTTCACATCCCATGTCAGACCGTATATACTCAAAACTTGATGAGTTGAATAACCGATTGAAGGATATGGGTTATCAGCCTGATACAAACTATGTGCTCCATGATGTTGAAGAGGAACACAAAGCAGCCTTTCTTTATCAACACAGTGAGAGGTTGGCCATTGCTTTTGGATTGATTGCCAAACCTCCAGGATCTCCTATCCAGATTTTGAAAAATCTTAGGGTATGTGGAGACTGTCACACTGTTATTAAATTAATTTCGGTGATAGAAGCGAGGGATATAGTTGTCAGAGATTCAAATCGATACCACCACTTCAAGGGTGGTTTATGCTCTTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

818

Amino Acids

91.51

Weight (kDa)

8.26

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	159 - 207	3.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	161 - 208	5.1e-12	PPR repeat family
PPR_1	PF12854	161 - 189	4.6e-07	PPR repeat
PPR	PF01535	163 - 192	9.9e-08	PPR repeat
PPR_2	PF13041	364 - 407	1.3e-13	PPR repeat family
PPR	PF01535	366 - 396	2e-07	PPR repeat
PPR_2	PF13041	460 - 508	1.8e-09	PPR repeat family
E_motif	PF20431	628 - 690	2.5e-20	E motif
Eplus_motif	PF20430	695 - 722	6e-09	E+ motif
DYW_deaminase	PF14432	726 - 818	2.1e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27610
fragaria_vesca	FvH4_3g24581
prunus_persica	Prupe.6G127000_v2.0.a1
pyrus_communis	pycom11g13360
rosa_chinensis	RchiOBHm_Chr5g0044141
rosa_laevigata	RLG00000034246
rosa_multiflora	Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036910
rosa_rugosa	Rorug05G0210800
rosa_samantha	Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana	Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1059, 1268, 1817
Acc36I	ACCTGC	3 cut(s)	643, 803, 1134
Acc65I	GGTACC	1 cut(s)	1122
AccB1I	GGYRCC	1 cut(s)	1122
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccI	GTMKAC	3 cut(s)	274, 346, 1618
AciI	CCGC	4 cut(s)	6, 226, 875, 1947
AclWI	GGATC	4 cut(s)	19, 32, 1733, 2305
AcoI	YGGCCR	3 cut(s)	1107, 2097, 2262
AcsI	RAATTY	2 cut(s)	1449, 1624
AcuI	CTGAAG	3 cut(s)	1365, 1515, 1916
AfaI	GTAC	5 cut(s)	212, 1124, 1254, 1672, 1778
AfiI	CCNNNNNNNGG	7 cut(s)	21, 253, 381, 544, 1298, 2167, 2422
AflIII	ACRYGT	1 cut(s)	720
AjnI	CCWGG	4 cut(s)	537, 1017, 2050, 2293
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
Alw21I	GWGCWC	4 cut(s)	55, 1755, 1861, 2205
Alw26I	GTCTC	5 cut(s)	95, 171, 470, 1998, 2331
AlwI	GGATC	4 cut(s)	19, 32, 1733, 2305
AoxI	GGCC	4 cut(s)	267, 1107, 2097, 2262
ApeKI	GCWGC	5 cut(s)	1910, 1949, 1979, 1982, 2231
ApoI	RAATTY	2 cut(s)	1449, 1624
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AseI	ATTAAT	2 cut(s)	1512, 2360
Asp700I	GAANNNNTTC	1 cut(s)	1160
Asp718I	GGTACC	1 cut(s)	1122
AspLEI	GCGC	1 cut(s)	1523
AspS9I	GGNCC	4 cut(s)	267, 402, 1526, 1720
AsuC2I	CCSGG	3 cut(s)	15, 266, 376
AsuHPI	GGTGA	7 cut(s)	95, 1220, 1281, 1874, 2083, 2114, 2380
AvaII	GGWCC	3 cut(s)	402, 1526, 1720
BalI	TGGCCA	1 cut(s)	2264
BamHI	GGATCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	1122
BanII	GRGCYC	2 cut(s)	55, 1861
BbsI	GAAGAC	2 cut(s)	291, 1434
Bbv12I	GWGCWC	4 cut(s)	55, 1755, 1861, 2205
BbvI	GCAGC	5 cut(s)	1922, 1936, 1966, 1994, 2243
BccI	CCATC	6 cut(s)	733, 859, 1002, 1223, 1631, 2017
BceAI	ACGGC	5 cut(s)	224, 647, 951, 1122, 1860
BciT130I	CCWGG	4 cut(s)	539, 1019, 2052, 2295
BclI	TGATCA	2 cut(s)	331, 1113
BcnI	CCSGG	3 cut(s)	15, 266, 376
BcoDI	GTCTC	5 cut(s)	95, 171, 470, 1998, 2331
BfaI	CTAG	2 cut(s)	753, 1503
BfmI	CTRYAG	4 cut(s)	1127, 1296, 1836, 1980
BfuAI	ACCTGC	3 cut(s)	643, 803, 1134
BisI	GCNGC	5 cut(s)	1911, 1950, 1980, 1983, 2232
BlsI	GCNGC	5 cut(s)	1912, 1951, 1981, 1984, 2233
Bme1390I	CCNGG	7 cut(s)	15, 266, 376, 539, 1019, 2052, 2295
Bme18I	GGWCC	3 cut(s)	402, 1526, 1720
BmgT120I	GGNCC	4 cut(s)	267, 402, 1526, 1720
BmiI	GGNNCC	4 cut(s)	26, 322, 403, 1124
BmrFI	CCNGG	7 cut(s)	15, 266, 376, 539, 1019, 2052, 2295
BmsI	GCATC	6 cut(s)	552, 998, 1042, 1065, 1602, 1831
BpiI	GAAGAC	2 cut(s)	291, 1434
BpmI	CTGGAG	2 cut(s)	1442, 2277
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	3 cut(s)	15, 266, 376
Bsa29I	ATCGAT	1 cut(s)	2407
BsaAI	YACGTR	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	2403
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	432, 663, 1434, 2051
Bsc4I	CCNNNNNNNGG	7 cut(s)	21, 253, 381, 544, 1298, 2167, 2422
Bse118I	RCCGGY	2 cut(s)	269, 2099
Bse1I	ACTGG	3 cut(s)	282, 1459, 1997
Bse3DI	GCAATG	4 cut(s)	226, 961, 1407, 2265
Bse8I	GATNNNNATC	1 cut(s)	2403
BseBI	CCWGG	4 cut(s)	539, 1019, 2052, 2295
BseCI	ATCGAT	1 cut(s)	2407
BseDI	CCNNGG	4 cut(s)	432, 663, 1434, 2051
BseGI	GGATG	4 cut(s)	744, 989, 2032, 2113
BseJI	GATNNNNATC	1 cut(s)	2403
BseLI	CCNNNNNNNGG	7 cut(s)	21, 253, 381, 544, 1298, 2167, 2422
BseMI	GCAATG	4 cut(s)	226, 961, 1407, 2265
BseMII	CTCAG	1 cut(s)	1594
BseNI	ACTGG	3 cut(s)	282, 1459, 1997
BseRI	GAGGAG	2 cut(s)	466, 1622
BseXI	GCAGC	5 cut(s)	1922, 1936, 1966, 1994, 2243
BseYI	CCCAGC	2 cut(s)	128, 1897
BsgI	GTGCAG	1 cut(s)	1057
BshFI	GGCC	4 cut(s)	269, 1109, 2099, 2264
BshNI	GGYRCC	1 cut(s)	1122
BshVI	ATCGAT	1 cut(s)	2407
BsiHKAI	GWGCWC	4 cut(s)	55, 1755, 1861, 2205
BsiSI	CCGG	6 cut(s)	15, 265, 270, 375, 1788, 2100
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	7 cut(s)	21, 253, 381, 544, 1298, 2167, 2422
BsmAI	GTCTC	5 cut(s)	95, 171, 470, 1998, 2331
BsmBI	CGTCTC	2 cut(s)	95, 470
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	269, 1109, 2099, 2264
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	55, 1755, 1861, 2205
Bsp1407I	TGTACA	1 cut(s)	1776
Bsp143I	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
BspACI	CCGC	4 cut(s)	6, 226, 875, 1947
BspANI	GGCC	4 cut(s)	269, 1109, 2099, 2264
BspCNI	CTCAG	1 cut(s)	1593
BspDI	ATCGAT	1 cut(s)	2407
BspLI	GGNNCC	4 cut(s)	26, 322, 403, 1124
BspMAI	CTGCAG	3 cut(s)	1131, 1840, 1984
BspMI	ACCTGC	3 cut(s)	643, 803, 1134
BspPI	GGATC	4 cut(s)	19, 32, 1733, 2305
BspT107I	GGYRCC	1 cut(s)	1122
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	4 cut(s)	226, 961, 1407, 2265
BsrFI	RCCGGY	2 cut(s)	269, 2099
BsrGI	TGTACA	1 cut(s)	1776
BsrI	ACTGG	3 cut(s)	282, 1459, 1997
BssAI	RCCGGY	2 cut(s)	269, 2099
BssECI	CCNNGG	4 cut(s)	432, 663, 1434, 2051
BssMI	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
Bst2UI	CCWGG	4 cut(s)	539, 1019, 2052, 2295
Bst4CI	ACNGT	9 cut(s)	910, 1031, 1435, 1540, 1886, 2129, 2252, 2342, 2350
Bst6I	CTCTTC	3 cut(s)	209, 971, 2211
BstAPI	GCANNNNNTGC	1 cut(s)	1406
BstAUI	TGTACA	1 cut(s)	1776
BstBAI	YACGTR	1 cut(s)	597
BstC8I	GCNNGC	9 cut(s)	51, 873, 1407, 1519, 1567, 1681, 1826, 1857, 1873
BstDEI	CTNAG	5 cut(s)	184, 1580, 1684, 1891, 2324
BstDSI	CCRYGG	2 cut(s)	663, 1434
BstENI	CCTNNNNNAGG	1 cut(s)	1296
BstF5I	GGATG	4 cut(s)	744, 989, 2032, 2113
BstHHI	GCGC	1 cut(s)	1523
BstKTI	GATC	6 cut(s)	27, 334, 1116, 1741, 1774, 2300
BstMAI	GTCTC	5 cut(s)	95, 171, 470, 1998, 2331
BstMBI	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
BstMWI	GCNNNNNNNGC	6 cut(s)	225, 266, 1397, 1406, 1415, 1552
BstNI	CCWGG	4 cut(s)	539, 1019, 2052, 2295
BstNSI	RCATGY	3 cut(s)	724, 1259, 1828
BstSCI	CCNGG	7 cut(s)	13, 264, 374, 537, 1017, 2050, 2293
BstSFI	CTRYAG	4 cut(s)	1127, 1296, 1836, 1980
BstSNI	TACGTA	1 cut(s)	597
BstV1I	GCAGC	5 cut(s)	1922, 1936, 1966, 1994, 2243
BstV2I	GAAGAC	2 cut(s)	291, 1434
BstX2I	RGATCY	2 cut(s)	24, 2297
BstXI	CCANNNNNNTGG	1 cut(s)	1222
BstYI	RGATCY	2 cut(s)	24, 2297
Bsu15I	ATCGAT	1 cut(s)	2407
BsuRI	GGCC	4 cut(s)	269, 1109, 2099, 2264
BsuTUI	ATCGAT	1 cut(s)	2407
BtgI	CCRYGG	2 cut(s)	663, 1434
BtgZI	GCGATG	2 cut(s)	980, 1820
BtsCI	GGATG	4 cut(s)	744, 989, 2032, 2113
BtsI	GCAGTG	2 cut(s)	1045, 1833
BtsIMutI	CAGTG	7 cut(s)	368, 1045, 1123, 1545, 1833, 2257, 2346
BveI	ACCTGC	3 cut(s)	643, 803, 1134
Cac8I	GCNNGC	9 cut(s)	51, 873, 1407, 1519, 1567, 1681, 1826, 1857, 1873
CfoI	GCGC	1 cut(s)	1523
Cfr10I	RCCGGY	2 cut(s)	269, 2099
Cfr13I	GGNCC	4 cut(s)	267, 402, 1526, 1720
ClaI	ATCGAT	1 cut(s)	2407
CseI	GACGC	1 cut(s)	1325
Csp6I	GTAC	5 cut(s)	211, 1123, 1253, 1671, 1777
CspCI	CAANNNNNGTGG	4 cut(s)	298, 333, 1002, 1037
CviQI	GTAC	5 cut(s)	211, 1123, 1253, 1671, 1777
DdeI	CTNAG	5 cut(s)	184, 1580, 1684, 1891, 2324
DpnI	GATC	6 cut(s)	26, 333, 1115, 1740, 1773, 2299
DpnII	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
EaeI	YGGCCR	3 cut(s)	1107, 2097, 2262
Eam1104I	CTCTTC	3 cut(s)	209, 971, 2211
EarI	CTCTTC	3 cut(s)	209, 971, 2211
Ecl136II	GAGCTC	2 cut(s)	53, 1859
Eco105I	TACGTA	1 cut(s)	597
Eco24I	GRGCYC	2 cut(s)	55, 1861
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	3 cut(s)	402, 1526, 1720
Eco53kI	GAGCTC	2 cut(s)	53, 1859
Eco57I	CTGAAG	3 cut(s)	1365, 1515, 1916
EcoICRI	GAGCTC	2 cut(s)	53, 1859
EcoNI	CCTNNNNNAGG	1 cut(s)	1296
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	4 cut(s)	537, 1017, 2050, 2293
EcoT38I	GRGCYC	2 cut(s)	55, 1861
Esp3I	CGTCTC	2 cut(s)	95, 470
FaqI	GGGAC	1 cut(s)	415
FauI	CCCGC	1 cut(s)	868
FbaI	TGATCA	2 cut(s)	331, 1113
FblI	GTMKAC	3 cut(s)	274, 346, 1618
Fnu4HI	GCNGC	5 cut(s)	1911, 1950, 1980, 1983, 2232
FokI	GGATG	4 cut(s)	751, 976, 2039, 2100
FriOI	GRGCYC	2 cut(s)	55, 1861
Fsp4HI	GCNGC	5 cut(s)	1911, 1950, 1980, 1983, 2232
FspBI	CTAG	2 cut(s)	753, 1503
GlaI	GCGC	1 cut(s)	1522
GluI	GCNGC	5 cut(s)	1911, 1950, 1980, 1983, 2232
GsaI	CCCAGC	2 cut(s)	132, 1901
GsuI	CTGGAG	2 cut(s)	1442, 2277
HaeIII	GGCC	4 cut(s)	269, 1109, 2099, 2264
HapII	CCGG	6 cut(s)	15, 265, 270, 375, 1788, 2100
HgaI	GACGC	1 cut(s)	1325
HhaI	GCGC	1 cut(s)	1523
Hin6I	GCGC	1 cut(s)	1521
HinP1I	GCGC	1 cut(s)	1521
HincII	GTYRAC	2 cut(s)	244, 1464
HindII	GTYRAC	2 cut(s)	244, 1464
HindIII	AAGCTT	2 cut(s)	843, 1793
HinfI	GANTC	4 cut(s)	456, 1810, 1943, 2399
HpaII	CCGG	6 cut(s)	15, 265, 270, 375, 1788, 2100
HphI	GGTGA	7 cut(s)	95, 1220, 1281, 1874, 2083, 2114, 2380
Hpy188I	TCNGA	3 cut(s)	864, 2125, 2396
Hpy188III	TCNNGA	2 cut(s)	1343, 2308
HpyCH4III	ACNGT	9 cut(s)	910, 1031, 1435, 1540, 1886, 2129, 2252, 2342, 2350
HpyCH4IV	ACGT	2 cut(s)	88, 596
HpyF10VI	GCNNNNNNNGC	6 cut(s)	225, 266, 1397, 1406, 1415, 1552
HpyF3I	CTNAG	5 cut(s)	184, 1580, 1684, 1891, 2324
HpySE526I	ACGT	2 cut(s)	88, 596
HspAI	GCGC	1 cut(s)	1521
KpnI	GGTACC	1 cut(s)	1126
Ksp22I	TGATCA	2 cut(s)	331, 1113
Kzo9I	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
LmnI	GCTCC	4 cut(s)	1439, 1543, 1750, 2208
Lsp1109I	GCAGC	5 cut(s)	1922, 1936, 1966, 1994, 2243
LweI	GCATC	6 cut(s)	552, 998, 1042, 1065, 1602, 1831
MaeI	CTAG	2 cut(s)	753, 1503
MaeII	ACGT	2 cut(s)	88, 596
MaeIII	GTNAC	8 cut(s)	512, 790, 820, 904, 1096, 1287, 1886, 2342
MalI	GATC	6 cut(s)	26, 333, 1115, 1740, 1773, 2299
MboI	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
MboII	GAAGA	9 cut(s)	196, 291, 398, 947, 988, 1061, 1439, 2086, 2228
MflI	RGATCY	2 cut(s)	24, 2297
MhlI	GDGCHC	4 cut(s)	55, 1755, 1861, 2205
MlsI	TGGCCA	1 cut(s)	2264
MluNI	TGGCCA	1 cut(s)	2264
MlyI	GAGTC	2 cut(s)	465, 1937
MmeI	TCCRAC	2 cut(s)	525, 819
Mox20I	TGGCCA	1 cut(s)	2264
MroXI	GAANNNNTTC	1 cut(s)	1160
MscI	TGGCCA	1 cut(s)	2264
MseI	TTAA	9 cut(s)	717, 858, 882, 1326, 1446, 1512, 1575, 2355, 2360
MslI	CAYNNNNRTG	3 cut(s)	700, 966, 1220
Msp20I	TGGCCA	1 cut(s)	2264
MspA1I	CMGCKG	2 cut(s)	1949, 1985
MspI	CCGG	6 cut(s)	15, 265, 270, 375, 1788, 2100
MspR9I	CCNGG	7 cut(s)	15, 266, 376, 539, 1019, 2052, 2295
MvaI	CCWGG	4 cut(s)	539, 1019, 2052, 2295
MwoI	GCNNNNNNNGC	6 cut(s)	225, 266, 1397, 1406, 1415, 1552
NciI	CCSGG	3 cut(s)	15, 266, 376
NdeII	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
NlaIV	GGNNCC	4 cut(s)	26, 322, 403, 1124
NmeAIII	GCCGAG	1 cut(s)	1808
NmuCI	GTSAC	2 cut(s)	1287, 2342
NspI	RCATGY	3 cut(s)	724, 1259, 1828
PaeI	GCATGC	1 cut(s)	1828
PciI	ACATGT	1 cut(s)	720
PdmI	GAANNNNTTC	1 cut(s)	1160
PfeI	GAWTC	2 cut(s)	1810, 2399
PflMI	CCANNNNNTGG	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	2293
PkrI	GCNGC	5 cut(s)	1912, 1951, 1981, 1984, 2233
PleI	GAGTC	2 cut(s)	464, 1937
PpsI	GAGTC	2 cut(s)	464, 1937
Ppu21I	YACGTR	1 cut(s)	597
PpuMI	RGGWCCY	1 cut(s)	402
PscI	ACATGT	1 cut(s)	720
PshBI	ATTAAT	2 cut(s)	1512, 2360
PsiI	TTATAA	3 cut(s)	1059, 1268, 1817
Psp124BI	GAGCTC	2 cut(s)	55, 1861
Psp5II	RGGWCCY	1 cut(s)	402
Psp6I	CCWGG	4 cut(s)	537, 1017, 2050, 2293
PspFI	CCCAGC	2 cut(s)	128, 1897
PspGI	CCWGG	4 cut(s)	537, 1017, 2050, 2293
PspN4I	GGNNCC	4 cut(s)	26, 322, 403, 1124
PspPI	GGNCC	4 cut(s)	267, 402, 1526, 1720
PspPPI	RGGWCCY	1 cut(s)	402
PstI	CTGCAG	3 cut(s)	1131, 1840, 1984
PsuI	RGATCY	2 cut(s)	24, 2297
PvuII	CAGCTG	1 cut(s)	1985
RsaI	GTAC	5 cut(s)	212, 1124, 1254, 1672, 1778
RsaNI	GTAC	5 cut(s)	211, 1123, 1253, 1671, 1777
RseI	CAYNNNNRTG	3 cut(s)	700, 966, 1220
SacI	GAGCTC	2 cut(s)	55, 1861
SaqAI	TTAA	9 cut(s)	717, 858, 882, 1326, 1446, 1512, 1575, 2355, 2360
SatI	GCNGC	5 cut(s)	1911, 1950, 1980, 1983, 2232
Sau3AI	GATC	6 cut(s)	24, 331, 1113, 1738, 1771, 2297
Sau96I	GGNCC	4 cut(s)	267, 402, 1526, 1720
SchI	GAGTC	2 cut(s)	465, 1937
ScrFI	CCNGG	7 cut(s)	15, 266, 376, 539, 1019, 2052, 2295
SduI	GDGCHC	4 cut(s)	55, 1755, 1861, 2205
SfaNI	GCATC	6 cut(s)	552, 998, 1042, 1065, 1602, 1831
SfcI	CTRYAG	4 cut(s)	1127, 1296, 1836, 1980
SinI	GGWCC	3 cut(s)	402, 1526, 1720
SmiMI	CAYNNNNRTG	3 cut(s)	700, 966, 1220
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SnaBI	TACGTA	1 cut(s)	597
SphI	GCATGC	1 cut(s)	1828
SsiI	CCGC	4 cut(s)	6, 226, 875, 1947
SspI	AATATT	4 cut(s)	1003, 1714, 1735, 1972
SspMI	CTAG	2 cut(s)	753, 1503
SstI	GAGCTC	2 cut(s)	55, 1861
StyD4I	CCNGG	7 cut(s)	13, 264, 374, 537, 1017, 2050, 2293
TaaI	ACNGT	9 cut(s)	910, 1031, 1435, 1540, 1886, 2129, 2252, 2342, 2350
TaiI	ACGT	2 cut(s)	91, 599
TaqI	TCGA	4 cut(s)	159, 207, 414, 2407
TatI	WGTACW	4 cut(s)	210, 1252, 1670, 1776
TfiI	GAWTC	2 cut(s)	1810, 2399
Tru1I	TTAA	9 cut(s)	717, 858, 882, 1326, 1446, 1512, 1575, 2355, 2360
Tru9I	TTAA	9 cut(s)	717, 858, 882, 1326, 1446, 1512, 1575, 2355, 2360
TscAI	CASTG	7 cut(s)	368, 1045, 1123, 1545, 1840, 2257, 2353
TseFI	GTSAC	2 cut(s)	1287, 2342
TseI	GCWGC	5 cut(s)	1910, 1949, 1979, 1982, 2231
Tsp45I	GTSAC	2 cut(s)	1287, 2342
TspRI	CASTG	7 cut(s)	368, 1045, 1123, 1545, 1840, 2257, 2353
Van91I	CCANNNNNTGG	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	402, 1526, 1720
VspI	ATTAAT	2 cut(s)	1512, 2360
XagI	CCTNNNNNAGG	1 cut(s)	1296
XapI	RAATTY	2 cut(s)	1449, 1624
XceI	RCATGY	3 cut(s)	724, 1259, 1828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2423
XmiI	GTMKAC	3 cut(s)	274, 346, 1618
XmnI	GAANNNNTTC	1 cut(s)	1160
XspI	CTAG	2 cut(s)	753, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.