Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015364

Physical Location & Seq

Genomic Coordinates Forward (+)

39335069 .. 39338520

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034246

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGACCGCAAAGCCCCGTTTGAGGAGCCTTGCAATCTCTTTCACAAAGCGAGCTCTCACTCAAGCCACCCACCTTTCCTCTCAAACCAAACGTCTCTCTCACTCTCAGCCTATTTCCTTCACTCCCAAACCCAGCAACACTATAAATGCACACCACCTGTTCGATAAAACTCCCCAGAGAGACTCCTTAGAATACACCCACTTACTCTTCGAGTACACTCGCAATGACCGCAACCATGAAGCCATCAACCTCTTTCTGGGTGCTTCCCGGGCTGGTCTGCCGGTCAATGGGTCGGTTCTGTCCTCTGTGGTTAAGGCTTGTGGAAGCTTGTGTGATCAAGTTGTGGGTAGACAAGTGCATTGTCAGTGTGTCAAGTCCGGGCTTGGGGAAGATGTTAGTGTTGGGACCTCTCTTGTCGATATGTATATGAAAACCGAGGGTGTTGTGGAGGGGAGGAGAGTCTTTGATGAGATGAGGGAGACGAATGTAGTGTCATGGACTTCATTGATTTCGGGTTACGCAAGAAACGGATTGAATGACCAGGCGTTGGAGTTGTTTTCACAGATGCAAATGGAAGGAAATAAGCCGAACCCGTTTACGTATGTGGCTGTGCTTGGAGTTTTGGCAGATGACGGGTTGGTTGAGAAGGGAAATCAGGTTCATGCCGTGGTTATAAAGAATGGTTATGTGGCGATTACATTCTTGTGCAATTCGTTGATTAACATGTATTTAAAGTCAGGGATGGTTAGAGAGGCTAGAGCTGTTTTTGATAGTATGGCAAGTAGAGATGAGGTTACATGGAACAGCTTGATTGCAGGTTATGTGACGAATGGGCTTGAGTTGGAAGCTTTTGAAATGTTTAATCAGATGGGGCTTGCGGGTATTAAGTTCACGCAACCGATATTTGTTACTGTTATCAAGTTATGTGCTAACTATGAAGAATTGGGTTTTACAAGACAGCTACATTGCTGTGTTTTGAAGAGTGGGTTGGCATCCCATTGCAATATTGAAACAGCAATCCTGGTGGCTTACAGTAAGTGCAGTGAAATGGACGATGCTTATAATATGTTCTCCATGATGCAAGGTGTTCAAAGTGTAGTAACTTGGACGGCCATGATCAGTGGGTACCTGCAGAATCGTGGAACAGAGAAAGGAGTGAAGTTATTCTGTAAAATGAGCAGAGAAGGTGTTAGACCAAATGATTTCACTTATTCTGCCATCATTATGGCCCACCCTTCAATATCTATATTCCAAGTACATGCACAAGTTATAAAAACTAATTATGAGAAGTCACCTTCTGTAGGAACTTCACTCATAGACACTTATGTTAAGACGGGAAATGTTCCTGAAGCTGAAAAAGTTTTCCTAACAATTGACAAGAAGGACGTGGTAGCATGGTCAGCAATGCTTGCTGGATATGCTCAAATAGAAGATACCGTGGGAGCTATTAAAATTTTCCTCCAGTTGACAAGAAAAGGGGTCAAACCTAACGAGTTTACTTTGTCTGGTATCATTAATGCTTGCGCTGGACCTTCAGCAACAGTGGAGCAGGGGAAACAATTTCATGCTTGCTCAATTAAACTCAGGTTGAACAATACTTTGTGTCTAAGTAGTGCTCTTGTCACCATGTATGCAAAGATGGGGAATATTGAAAGTGCAAATGAAGTTTTCAAGAGACAAGGCGAGAGAGACTTGGTTTCGTGGAACTCTATGATCTCTGGATATGCACAACATGGTCAGGGGAATAAGGTTCTTGAAGTATTTGAGGAGATGCGTAGACAAAATTTGGAAATTGATGGGATAACTTTCATTCTCATAATCTCTGCCTGTACTCATGCAGGCTTAGTAGATGAAGGTAAAAGATTTTTCAATATTATGGTCCAAGATTACAATATTGATCCTACAATGGAGCACTATTCTTGTATGGTTGATCTGTACAGCCGAGCCGGAAAGCTTGAAAAAGCGATGAATCTTATAAACAGCATGCCCTTCACTGCAGATGCAAATGATATGGGTTATCAGCCTGATACAAACTACGTGCTCCATGATGTTGAAGAGGAACACAAAGCAGCCTTTCTTTATCAACACAGTGAGAGGCTGGCCATTGCTTTTGGATTGATTGCCAAACCTCTAGGATCTCCTATCCAGATTTTGAAAAATCTTAGGCATTGTGCCACCTTTGCTCGTGGTCCTTGGTCCATGAAGTCGGGAAATTTTATCGCCACCACTCCTGTTTGTGAGGTATTGGACCTTACATTTCACAGTTCCATGGAAAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

761

Amino Acids

84.28

Weight (kDa)

6.87

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	160 - 208	1.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	162 - 209	4e-12	PPR repeat family
PPR_1	PF12854	162 - 190	2.2e-07	PPR repeat
PPR	PF01535	164 - 193	3.2e-08	PPR repeat
PPR_2	PF13041	263 - 299	4.5e-06	PPR repeat family
PPR	PF01535	265 - 294	2.9e-06	PPR repeat
PPR_2	PF13041	365 - 408	7.1e-13	PPR repeat family
PPR	PF01535	367 - 397	1.6e-06	PPR repeat
PPR_2	PF13041	461 - 509	3e-09	PPR repeat family
PPR_2	PF13041	564 - 611	1.8e-11	PPR repeat family
PPR	PF01535	566 - 595	1.7e-09	PPR repeat
DYW_deaminase	PF14432	672 - 725	2.4e-16	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27610
fragaria_vesca	FvH4_3g24581
prunus_persica	Prupe.6G127000_v2.0.a1
pyrus_communis	pycom11g13360
rosa_chinensis	RchiOBHm_Chr5g0044141
rosa_laevigata	RLG00000034246
rosa_multiflora	Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036910
rosa_rugosa	Rorug05G0210800
rosa_samantha	Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana	Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	674, 1062, 1271, 1976
Acc36I	ACCTGC	2 cut(s)	806, 1137
Acc65I	GGTACC	1 cut(s)	1125
AccB1I	GGYRCC	1 cut(s)	1125
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccI	GTMKAC	2 cut(s)	349, 1777
AciI	CCGC	3 cut(s)	6, 229, 878
AclWI	GGATC	2 cut(s)	1892, 2143
AcoI	YGGCCR	2 cut(s)	1110, 2100
AcsI	RAATTY	3 cut(s)	1452, 1783, 2212
AcuI	CTGAAG	2 cut(s)	1368, 1518
AfaI	GTAC	5 cut(s)	215, 1127, 1257, 1831, 1937
AfiI	CCNNNNNNNGG	6 cut(s)	21, 256, 287, 384, 547, 1301
AflIII	ACRYGT	1 cut(s)	723
AjiI	CACGTC	1 cut(s)	1387
AjnI	CCWGG	2 cut(s)	540, 1020
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AloI	GAACNNNNNNTCC	2 cut(s)	642, 674
AluBI	AGCT	9 cut(s)	53, 327, 761, 807, 848, 961, 1352, 1445, 1954
AluI	AGCT	9 cut(s)	53, 327, 761, 807, 848, 961, 1352, 1445, 1954
Alw21I	GWGCWC	4 cut(s)	55, 1618, 1914, 2043
Alw26I	GTCTC	5 cut(s)	98, 174, 473, 1669, 1683
AlwI	GGATC	2 cut(s)	1892, 2143
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	3 cut(s)	1110, 1227, 2100
ApeKI	GCWGC	1 cut(s)	2069
ApoI	RAATTY	3 cut(s)	1452, 1783, 2212
ArsI	GACNNNNNNTTYG	4 cut(s)	76, 108, 476, 508
AseI	ATTAAT	1 cut(s)	1515
Asp700I	GAANNNNTTC	1 cut(s)	1163
Asp718I	GGTACC	1 cut(s)	1125
AspLEI	GCGC	1 cut(s)	1526
AspS9I	GGNCC	7 cut(s)	405, 1228, 1529, 1879, 2189, 2196, 2248
AsuC2I	CCSGG	3 cut(s)	268, 269, 379
AsuHPI	GGTGA	2 cut(s)	1284, 1615
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	6 cut(s)	405, 1529, 1879, 2189, 2196, 2248
BalI	TGGCCA	1 cut(s)	2102
BanI	GGYRCC	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	2184
Bbv12I	GWGCWC	4 cut(s)	55, 1618, 1914, 2043
BbvI	GCAGC	1 cut(s)	2081
BccI	CCATC	6 cut(s)	251, 736, 862, 1226, 1633, 1790
BceAI	ACGGC	2 cut(s)	650, 1125
BciT130I	CCWGG	2 cut(s)	542, 1022
BclI	TGATCA	2 cut(s)	334, 1116
BcnI	CCSGG	3 cut(s)	268, 269, 379
BcoDI	GTCTC	5 cut(s)	98, 174, 473, 1669, 1683
BfaI	CTAG	2 cut(s)	756, 2132
BfmI	CTRYAG	3 cut(s)	1130, 1299, 1995
BfuAI	ACCTGC	2 cut(s)	806, 1137
BisI	GCNGC	1 cut(s)	2070
BlsI	GCNGC	1 cut(s)	2071
Bme1390I	CCNGG	5 cut(s)	268, 269, 379, 542, 1022
Bme18I	GGWCC	6 cut(s)	405, 1529, 1879, 2189, 2196, 2248
BmeT110I	CYCGRG	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	1387
BmgT120I	GGNCC	7 cut(s)	405, 1228, 1529, 1879, 2189, 2196, 2248
BmiI	GGNNCC	3 cut(s)	26, 406, 1127
BmrFI	CCNGG	5 cut(s)	268, 269, 379, 542, 1022
BmsI	GCATC	6 cut(s)	555, 1001, 1045, 1068, 1761, 1990
BpmI	CTGGAG	1 cut(s)	1445
BpuEI	CTTGAG	2 cut(s)	45, 857
BpuMI	CCSGG	3 cut(s)	268, 269, 379
BsaAI	YACGTR	2 cut(s)	600, 2038
BsaJI	CCNNGG	6 cut(s)	267, 435, 666, 1437, 2192, 2268
Bsc4I	CCNNNNNNNGG	6 cut(s)	21, 256, 287, 384, 547, 1301
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	1462
Bse3DI	GCAATG	5 cut(s)	229, 964, 997, 1410, 2103
BseBI	CCWGG	2 cut(s)	542, 1022
BseDI	CCNNGG	6 cut(s)	267, 435, 666, 1437, 2192, 2268
BseGI	GGATG	2 cut(s)	747, 992
BseLI	CCNNNNNNNGG	6 cut(s)	21, 256, 287, 384, 547, 1301
BseMI	GCAATG	5 cut(s)	229, 964, 997, 1410, 2103
BseMII	CTCAG	2 cut(s)	119, 1597
BseNI	ACTGG	1 cut(s)	1462
BseRI	GAGGAG	3 cut(s)	37, 469, 1781
BseXI	GCAGC	1 cut(s)	2081
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	1060
BshFI	GGCC	3 cut(s)	1112, 1229, 2102
BshNI	GGYRCC	1 cut(s)	1125
BsiHKAI	GWGCWC	4 cut(s)	55, 1618, 1914, 2043
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	4 cut(s)	268, 281, 378, 1947
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	6 cut(s)	21, 256, 287, 384, 547, 1301
BsmAI	GTCTC	5 cut(s)	98, 174, 473, 1669, 1683
BsmBI	CGTCTC	2 cut(s)	98, 473
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	1112, 1229, 2102
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	4 cut(s)	55, 1618, 1914, 2043
Bsp1407I	TGTACA	1 cut(s)	1935
Bsp143I	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
Bsp19I	CCATGG	1 cut(s)	2268
BspACI	CCGC	3 cut(s)	6, 229, 878
BspANI	GGCC	3 cut(s)	1112, 1229, 2102
BspCNI	CTCAG	2 cut(s)	118, 1596
BspLI	GGNNCC	3 cut(s)	26, 406, 1127
BspMAI	CTGCAG	2 cut(s)	1134, 1999
BspMI	ACCTGC	2 cut(s)	806, 1137
BspPI	GGATC	2 cut(s)	1892, 2143
BspT107I	GGYRCC	1 cut(s)	1125
BsrDI	GCAATG	5 cut(s)	229, 964, 997, 1410, 2103
BsrFI	RCCGGY	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	1935
BsrI	ACTGG	1 cut(s)	1462
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	6 cut(s)	267, 435, 666, 1437, 2192, 2268
BssMI	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
BssSI	CACGAG	1 cut(s)	2184
BssT1I	CCWWGG	2 cut(s)	2192, 2268
Bst2BI	CACGAG	1 cut(s)	2184
Bst2UI	CCWGG	2 cut(s)	542, 1022
Bst4CI	ACNGT	6 cut(s)	913, 1034, 1438, 1543, 2090, 2264
Bst6I	CTCTTC	3 cut(s)	212, 974, 2049
BstAPI	GCANNNNNTGC	1 cut(s)	1409
BstAUI	TGTACA	1 cut(s)	1935
BstBAI	YACGTR	2 cut(s)	600, 2038
BstC8I	GCNNGC	8 cut(s)	51, 876, 1410, 1522, 1570, 1840, 1985, 2100
BstDEI	CTNAG	6 cut(s)	105, 187, 1583, 1607, 1843, 2162
BstDSI	CCRYGG	3 cut(s)	666, 1437, 2268
BstENI	CCTNNNNNAGG	1 cut(s)	1299
BstF5I	GGATG	2 cut(s)	747, 992
BstHHI	GCGC	1 cut(s)	1526
BstKTI	GATC	6 cut(s)	337, 1119, 1716, 1900, 1933, 2138
BstMAI	GTCTC	5 cut(s)	98, 174, 473, 1669, 1683
BstMBI	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
BstMWI	GCNNNNNNNGC	6 cut(s)	228, 269, 1400, 1409, 1418, 2180
BstNI	CCWGG	2 cut(s)	542, 1022
BstNSI	RCATGY	3 cut(s)	727, 1262, 1987
BstSCI	CCNGG	5 cut(s)	266, 267, 377, 540, 1020
BstSFI	CTRYAG	3 cut(s)	1130, 1299, 1995
BstSNI	TACGTA	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	2081
BstX2I	RGATCY	1 cut(s)	2135
BstXI	CCANNNNNNTGG	1 cut(s)	1225
BstYI	RGATCY	1 cut(s)	2135
BsuRI	GGCC	3 cut(s)	1112, 1229, 2102
BtgI	CCRYGG	3 cut(s)	666, 1437, 2268
BtgZI	GCGATG	1 cut(s)	1979
BtrI	CACGTC	1 cut(s)	1387
BtsCI	GGATG	2 cut(s)	747, 992
BtsI	GCAGTG	2 cut(s)	1048, 1992
BtsIMutI	CAGTG	6 cut(s)	371, 1048, 1126, 1548, 1992, 2095
BveI	ACCTGC	2 cut(s)	806, 1137
Cac8I	GCNNGC	8 cut(s)	51, 876, 1410, 1522, 1570, 1840, 1985, 2100
CfoI	GCGC	1 cut(s)	1526
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	7 cut(s)	405, 1228, 1529, 1879, 2189, 2196, 2248
Cfr9I	CCCGGG	1 cut(s)	267
Csp6I	GTAC	5 cut(s)	214, 1126, 1256, 1830, 1936
CspCI	CAANNNNNGTGG	2 cut(s)	1005, 1040
CviQI	GTAC	5 cut(s)	214, 1126, 1256, 1830, 1936
DdeI	CTNAG	6 cut(s)	105, 187, 1583, 1607, 1843, 2162
DpnI	GATC	6 cut(s)	336, 1118, 1715, 1899, 1932, 2137
DpnII	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
DraI	TTTAAA	1 cut(s)	732
EaeI	YGGCCR	2 cut(s)	1110, 2100
Eam1104I	CTCTTC	3 cut(s)	212, 974, 2049
EarI	CTCTTC	3 cut(s)	212, 974, 2049
Ecl136II	GAGCTC	1 cut(s)	53
Eco105I	TACGTA	1 cut(s)	600
Eco130I	CCWWGG	2 cut(s)	2192, 2268
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	6 cut(s)	405, 1529, 1879, 2189, 2196, 2248
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	1368, 1518
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	1299
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	540, 1020
EcoT14I	CCWWGG	2 cut(s)	2192, 2268
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	2192, 2268
Esp3I	CGTCTC	2 cut(s)	98, 473
FaqI	GGGAC	1 cut(s)	418
FauI	CCCGC	1 cut(s)	871
FbaI	TGATCA	2 cut(s)	334, 1116
FblI	GTMKAC	2 cut(s)	349, 1777
Fnu4HI	GCNGC	1 cut(s)	2070
FokI	GGATG	2 cut(s)	754, 979
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	2070
FspBI	CTAG	2 cut(s)	756, 2132
GlaI	GCGC	1 cut(s)	1525
GluI	GCNGC	1 cut(s)	2070
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	1445
HaeIII	GGCC	3 cut(s)	1112, 1229, 2102
HapII	CCGG	4 cut(s)	268, 281, 378, 1947
HhaI	GCGC	1 cut(s)	1526
Hin6I	GCGC	1 cut(s)	1524
HinP1I	GCGC	1 cut(s)	1524
HincII	GTYRAC	1 cut(s)	1467
HindII	GTYRAC	1 cut(s)	1467
HindIII	AAGCTT	3 cut(s)	325, 846, 1952
HinfI	GANTC	4 cut(s)	182, 459, 1135, 1969
HpaII	CCGG	4 cut(s)	268, 281, 378, 1947
HphI	GGTGA	2 cut(s)	1284, 1615
Hpy166II	GTNNAC	7 cut(s)	216, 350, 597, 891, 1467, 1497, 1778
Hpy188I	TCNGA	1 cut(s)	867
Hpy188III	TCNNGA	6 cut(s)	1346, 1672, 1719, 1754, 2146, 2208
Hpy8I	GTNNAC	7 cut(s)	216, 350, 597, 891, 1467, 1497, 1778
HpyCH4III	ACNGT	6 cut(s)	913, 1034, 1438, 1543, 2090, 2264
HpyCH4IV	ACGT	4 cut(s)	91, 599, 1386, 2037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	228, 269, 1400, 1409, 1418, 2180
HpyF3I	CTNAG	6 cut(s)	105, 187, 1583, 1607, 1843, 2162
HpySE526I	ACGT	4 cut(s)	91, 599, 1386, 2037
HspAI	GCGC	1 cut(s)	1524
KpnI	GGTACC	1 cut(s)	1129
Ksp22I	TGATCA	2 cut(s)	334, 1116
Kzo9I	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
LmnI	GCTCC	5 cut(s)	24, 1442, 1546, 1909, 2046
Lsp1109I	GCAGC	1 cut(s)	2081
LweI	GCATC	6 cut(s)	555, 1001, 1045, 1068, 1761, 1990
MaeI	CTAG	2 cut(s)	756, 2132
MaeII	ACGT	4 cut(s)	91, 599, 1386, 2037
MaeIII	GTNAC	7 cut(s)	515, 793, 823, 907, 1099, 1290, 1621
MalI	GATC	6 cut(s)	336, 1118, 1715, 1899, 1932, 2137
MboI	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
MboII	GAAGA	6 cut(s)	199, 401, 950, 991, 1442, 2066
MfeI	CAATTG	1 cut(s)	1371
MflI	RGATCY	1 cut(s)	2135
MhlI	GDGCHC	4 cut(s)	55, 1618, 1914, 2043
MlsI	TGGCCA	1 cut(s)	2102
MluNI	TGGCCA	1 cut(s)	2102
MlyI	GAGTC	2 cut(s)	176, 468
MmeI	TCCRAC	2 cut(s)	528, 822
Mox20I	TGGCCA	1 cut(s)	2102
MroXI	GAANNNNTTC	1 cut(s)	1163
MscI	TGGCCA	1 cut(s)	2102
MseI	TTAA	9 cut(s)	312, 720, 731, 861, 885, 1329, 1449, 1515, 1578
MslI	CAYNNNNRTG	3 cut(s)	703, 969, 1223
Msp20I	TGGCCA	1 cut(s)	2102
MspI	CCGG	4 cut(s)	268, 281, 378, 1947
MspR9I	CCNGG	5 cut(s)	268, 269, 379, 542, 1022
MunI	CAATTG	1 cut(s)	1371
MvaI	CCWGG	2 cut(s)	542, 1022
MwoI	GCNNNNNNNGC	6 cut(s)	228, 269, 1400, 1409, 1418, 2180
NciI	CCSGG	3 cut(s)	268, 269, 379
NcoI	CCATGG	1 cut(s)	2268
NdeII	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
NlaIV	GGNNCC	3 cut(s)	26, 406, 1127
NmeAIII	GCCGAG	1 cut(s)	1967
NmuCI	GTSAC	3 cut(s)	823, 1290, 1621
NspI	RCATGY	3 cut(s)	727, 1262, 1987
PaeI	GCATGC	1 cut(s)	1987
PciI	ACATGT	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	1163
PfeI	GAWTC	2 cut(s)	1135, 1969
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	2071
PleI	GAGTC	2 cut(s)	176, 467
PpsI	GAGTC	2 cut(s)	176, 467
Ppu21I	YACGTR	2 cut(s)	600, 2038
PpuMI	RGGWCCY	1 cut(s)	405
PscI	ACATGT	1 cut(s)	723
PshBI	ATTAAT	1 cut(s)	1515
PsiI	TTATAA	4 cut(s)	674, 1062, 1271, 1976
Psp124BI	GAGCTC	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	540, 1020
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	540, 1020
PspN4I	GGNNCC	3 cut(s)	26, 406, 1127
PspPI	GGNCC	7 cut(s)	405, 1228, 1529, 1879, 2189, 2196, 2248
PspPPI	RGGWCCY	1 cut(s)	405
PstI	CTGCAG	2 cut(s)	1134, 1999
PsuI	RGATCY	1 cut(s)	2135
RsaI	GTAC	5 cut(s)	215, 1127, 1257, 1831, 1937
RsaNI	GTAC	5 cut(s)	214, 1126, 1256, 1830, 1936
RseI	CAYNNNNRTG	3 cut(s)	703, 969, 1223
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	9 cut(s)	312, 720, 731, 861, 885, 1329, 1449, 1515, 1578
SatI	GCNGC	1 cut(s)	2070
Sau3AI	GATC	6 cut(s)	334, 1116, 1713, 1897, 1930, 2135
Sau96I	GGNCC	7 cut(s)	405, 1228, 1529, 1879, 2189, 2196, 2248
SchI	GAGTC	2 cut(s)	176, 468
ScrFI	CCNGG	5 cut(s)	268, 269, 379, 542, 1022
SduI	GDGCHC	4 cut(s)	55, 1618, 1914, 2043
SfaNI	GCATC	6 cut(s)	555, 1001, 1045, 1068, 1761, 1990
SfcI	CTRYAG	3 cut(s)	1130, 1299, 1995
SinI	GGWCC	6 cut(s)	405, 1529, 1879, 2189, 2196, 2248
SmaI	CCCGGG	1 cut(s)	269
SmiMI	CAYNNNNRTG	3 cut(s)	703, 969, 1223
SmlI	CTYRAG	2 cut(s)	60, 836
SmoI	CTYRAG	2 cut(s)	60, 836
SnaBI	TACGTA	1 cut(s)	600
SphI	GCATGC	1 cut(s)	1987
SsiI	CCGC	3 cut(s)	6, 229, 878
SspI	AATATT	4 cut(s)	1006, 1648, 1873, 1894
SspMI	CTAG	2 cut(s)	756, 2132
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	5 cut(s)	266, 267, 377, 540, 1020
StyI	CCWWGG	2 cut(s)	2192, 2268
TaaI	ACNGT	6 cut(s)	913, 1034, 1438, 1543, 2090, 2264
TaiI	ACGT	4 cut(s)	94, 602, 1389, 2040
TaqI	TCGA	3 cut(s)	162, 210, 417
TatI	WGTACW	4 cut(s)	213, 1255, 1829, 1935
TfiI	GAWTC	2 cut(s)	1135, 1969
Tru1I	TTAA	9 cut(s)	312, 720, 731, 861, 885, 1329, 1449, 1515, 1578
Tru9I	TTAA	9 cut(s)	312, 720, 731, 861, 885, 1329, 1449, 1515, 1578
TscAI	CASTG	6 cut(s)	371, 1048, 1126, 1548, 1999, 2095
TseFI	GTSAC	3 cut(s)	823, 1290, 1621
TseI	GCWGC	1 cut(s)	2069
Tsp45I	GTSAC	3 cut(s)	823, 1290, 1621
TspGWI	ACGGA	1 cut(s)	543
TspMI	CCCGGG	1 cut(s)	267
TspRI	CASTG	6 cut(s)	371, 1048, 1126, 1548, 1999, 2095
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	6 cut(s)	405, 1529, 1879, 2189, 2196, 2248
VspI	ATTAAT	1 cut(s)	1515
XagI	CCTNNNNNAGG	1 cut(s)	1299
XapI	RAATTY	3 cut(s)	1452, 1783, 2212
XceI	RCATGY	3 cut(s)	727, 1262, 1987
XmaI	CCCGGG	1 cut(s)	267
XmiI	GTMKAC	2 cut(s)	349, 1777
XmnI	GAANNNNTTC	1 cut(s)	1163
XspI	CTAG	2 cut(s)	756, 2132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.